mRNA_H-elongata_contig142132.2914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142132.2914.1
Unique NamemRNA_H-elongata_contig142132.2914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A8F0FAZ7_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAZ7_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 2.220e-96
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LRQKGLASADK VNRKAIEGLV+SYIHTGGKIGVLVEVNCETDFVARREEFQEL QNIAMQIAASPDIRY+N++EIPEE+FL EKEIELKKDDLNNKP+NI+EKIILGRVEKTLK LSLLDQSFIRNPNITI+ELVKEKISLFGENIKI RFTRYTLGN
Sbjct:   42 LRQKGLASADKKVNRKAIEGLVNSYIHTGGKIGVLVEVNCETDFVARREEFQELAQNIAMQIAASPDIRYVNMDEIPEEIFLTEKEIELKKDDLNNKPDNIKEKIILGRVEKTLKTLSLLDQSFIRNPNITIDELVKEKISLFGENIKIKRFTRYTLGN 200          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A8F0JY19_9PHAE (Elongation factor Ts, mitochondrial n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JY19_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.920e-85
Identity = 128/159 (80.50%), Postives = 149/159 (93.71%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LRQKGLA+ADK  +RK IEG+V+SYIH GGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPD+ Y+NI+++P+E+FLAEKE+E  KDDL+NKPE ++EKIILGRVEKTLKNLSLL+QSFIRN NIT++EL+KEKISLFGENI+I RFTRYTLG+
Sbjct:   42 LRQKGLAAADKKADRKTIEGVVNSYIHAGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDVLYVNIDDVPKELFLAEKEVESGKDDLSNKPEEMKEKIILGRVEKTLKNLSLLNQSFIRNQNITVDELIKEKISLFGENIRIKRFTRYTLGD 200          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A8F0JZ93_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ93_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 8.640e-85
Identity = 129/159 (81.13%), Postives = 147/159 (92.45%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LRQKGLA+ADK V+RK +EG+V+SYIH GGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASP++ Y+N EEIPE+VFLAEK IE +KDDL+NKP  I+EKIILGRVEKTLK LSL+DQ+FIR+ NITI+EL+KEKISLFGENIK+ RFTRYTLGN
Sbjct:   42 LRQKGLAAADKKVDRKTVEGVVNSYIHAGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPEVLYVNSEEIPEQVFLAEKAIEAEKDDLSNKPPEIKEKIILGRVEKTLKKLSLIDQAFIRDANITIDELIKEKISLFGENIKVKRFTRYTLGN 200          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A0S0FB63_COSCS (Multifunctional fusion protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0S0FB63_COSCS)

HSP 1 Score: 253 bits (647), Expect = 9.710e-84
Identity = 128/159 (80.50%), Postives = 147/159 (92.45%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LRQKGLA+ADK V+RK IEG+V+SYIH GGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPD+ Y+N  +IP+E+FLAEKEIE +K DL NKP+ I+EKIILGR+EKTLKNLSLLDQ+FIR+ NITI+EL+KEKI+LFGENIKI RFTRYTLG+
Sbjct:   42 LRQKGLAAADKKVDRKTIEGVVNSYIHAGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDVLYVNTNDIPQELFLAEKEIESEKQDLINKPDEIKEKIILGRIEKTLKNLSLLDQAFIRDSNITIDELIKEKITLFGENIKIKRFTRYTLGS 200          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: Q2PQH2_FUCVE (Multifunctional fusion protein n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH2_FUCVE)

HSP 1 Score: 253 bits (645), Expect = 1.960e-83
Identity = 128/159 (80.50%), Postives = 146/159 (91.82%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LRQKGLASADK V+RKAIEGLV+SYIHTGGKIGVLVEVNCETDFVARREEFQELV+NIAMQIAASP++ Y+  ++IPEE F AEKEIELKK+DL NKP +I ++IILGRV+KTLK LSL+DQ FIR+PNIT+EEL+KEKISLFGENIKI RFTRY LG+
Sbjct:   42 LRQKGLASADKKVDRKAIEGLVNSYIHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKPNDIEDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 200          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A6B7EV40_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV40_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 4.440e-82
Identity = 125/159 (78.62%), Postives = 145/159 (91.19%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LR+KG ASA + +NRK IEGLV+SYIH GG+IGVL+EVNCETDFVARREEFQELVQ+IAMQ+AA PD+ YI  EEIPE+VFLAEKEIE  KDDLNNKP++I+EKIILGRVEKTLKNL+LLDQ FI++ NIT++EL+KEKISLFGENI+I RFTRYTLGN
Sbjct:   41 LREKGQASAHQKINRKTIEGLVNSYIHIGGRIGVLIEVNCETDFVARREEFQELVQDIAMQVAACPDVLYIKSEEIPEDVFLAEKEIESGKDDLNNKPDDIKEKIILGRVEKTLKNLTLLDQPFIKDTNITVDELIKEKISLFGENIRIKRFTRYTLGN 199          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A109QR64_9PHAE (Elongation factor Ts, mitochondrial n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A109QR64_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 2.170e-80
Identity = 124/158 (78.48%), Postives = 143/158 (90.51%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLG 474
            LR+KGLASADK V+R   EGLV SYIHTGGKIGVLVEVNCETDFVARREEFQELV+NIAMQIAASP++ YI ++++P+E+F +EKE+EL K+DL+NKPE I+ KIILGRVEKTLK LSL+DQ FIR+PNIT+EELVKEKISLFGENIKI RFTRY LG
Sbjct:   42 LRKKGLASADKKVDRNTSEGLVTSYIHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYIKMDDVPKEIFQSEKEMELNKNDLDNKPEEIKNKIILGRVEKTLKKLSLIDQPFIRDPNITVEELVKEKISLFGENIKIKRFTRYILG 199          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A8F0JXQ3_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXQ3_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 3.580e-79
Identity = 121/159 (76.10%), Postives = 139/159 (87.42%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LRQKGLA ADK  NRK IEGL+HSYIHTG KIGVL+EVNCETDFVARREEF EL  NIAMQIAASP++ Y+N ++IP+E F AE+EIELKK+DL NKP  I+EKI+LGRVEKTLK LSLL+Q FIRNP+IT+EEL+KEKI+LFGENI+I RF RY LGN
Sbjct:   42 LRQKGLAFADKKSNRKVIEGLIHSYIHTGAKIGVLLEVNCETDFVARREEFHELANNIAMQIAASPEVIYVNFDDIPKEYFKAEREIELKKEDLFNKPNEIKEKIMLGRVEKTLKTLSLLNQQFIRNPSITVEELIKEKIALFGENIRIKRFIRYNLGN 200          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: A0A7T8JK51_SCYLO (Multifunctional fusion protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A7T8JK51_SCYLO)

HSP 1 Score: 240 bits (613), Expect = 1.410e-78
Identity = 120/159 (75.47%), Postives = 143/159 (89.94%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LR+KG ASADK VNRK IEGLV+SYIH GG+IGVL+EVNCETDFVARREEFQELVQN+AMQIAASPD+ YI  ++IPE++   EK IE  K+DL+NKP++IREKIILGR++KTLKNL+LL+Q FIR+ NIT++EL+KEKISLFGENI+I RFTRYTLGN
Sbjct:   41 LREKGQASADKKVNRKTIEGLVNSYIHIGGRIGVLIEVNCETDFVARREEFQELVQNLAMQIAASPDVLYIQNDDIPEDIISNEKAIESGKEDLSNKPDDIREKIILGRIDKTLKNLTLLNQPFIRDANITVDELIKEKISLFGENIRIKRFTRYTLGN 199          
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Match: D1J791_ECTSI (Multifunctional fusion protein n=5 Tax=Ectocarpales TaxID=2877 RepID=D1J791_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.630e-77
Identity = 120/159 (75.47%), Postives = 142/159 (89.31%), Query Frame = 1
Query:    1 LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPENIREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKINRFTRYTLGN 477
            LR+KG ASA + +NRK IEG+V+SYIH GGKIGVL+EVNCETDFVARREEFQELVQNIAMQIAASPD+ YI   +IPEE+FL EK+IE +K+DL NKP+ I+EKIILGRVEKTLKNL+LL+Q  IR+ +IT++EL+KEKISLFGENI+I RFTRYTLGN
Sbjct:   41 LREKGQASAHQKINRKTIEGIVNSYIHIGGKIGVLIEVNCETDFVARREEFQELVQNIAMQIAASPDVLYIQSSDIPEEIFLNEKKIESEKEDLINKPDEIKEKIILGRVEKTLKNLTLLNQPCIRDASITVDELIKEKISLFGENIRIKRFTRYTLGN 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142132.2914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FAZ7_9PHAE2.220e-9691.82Elongation factor Ts, mitochondrial n=1 Tax=Desmar... [more]
A0A8F0JY19_9PHAE2.920e-8580.50Elongation factor Ts, mitochondrial n=2 Tax=Lamina... [more]
A0A8F0JZ93_9PHAE8.640e-8581.13Elongation factor Ts, mitochondrial n=1 Tax=Chorda... [more]
A0A0S0FB63_COSCS9.710e-8480.50Multifunctional fusion protein n=26 Tax=Laminarial... [more]
Q2PQH2_FUCVE1.960e-8380.50Multifunctional fusion protein n=3 Tax=Fucaceae Ta... [more]
A0A6B7EV40_9PHAE4.440e-8278.62Elongation factor Ts, mitochondrial n=1 Tax=Clados... [more]
A0A109QR64_9PHAE2.170e-8078.48Elongation factor Ts, mitochondrial n=14 Tax=Sarga... [more]
A0A8F0JXQ3_9PHAE3.580e-7976.10Elongation factor Ts, mitochondrial n=1 Tax=Protoh... [more]
A0A7T8JK51_SCYLO1.410e-7875.47Multifunctional fusion protein n=2 Tax=Scytosiphon... [more]
D1J791_ECTSI1.630e-7775.47Multifunctional fusion protein n=5 Tax=Ectocarpale... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142132contigH-elongata_contig142132:1206..1685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue4.6e-61
Seed eggNOG ortholog2880.D1J791
Preferred nameEFTS
KEGG koko:K02357
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0264@1,KOG1071@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.1925416-CDS-H-elongata_contig142132:1205..16851622929844.1925416-CDS-H-elongata_contig142132:1205..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142132 1206..1685 -
1691679180.434115-CDS-H-elongata_contig142132:1205..16851691679180.434115-CDS-H-elongata_contig142132:1205..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142132 1206..1685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142132.2914.1prot_H-elongata_contig142132.2914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142132 1206..1685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142132.2914.1

>prot_H-elongata_contig142132.2914.1 ID=prot_H-elongata_contig142132.2914.1|Name=mRNA_H-elongata_contig142132.2914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
LRQKGLASADKNVNRKAIEGLVHSYIHTGGKIGVLVEVNCETDFVARREE
FQELVQNIAMQIAASPDIRYINIEEIPEEVFLAEKEIELKKDDLNNKPEN
IREKIILGRVEKTLKNLSLLDQSFIRNPNITIEELVKEKISLFGENIKIN
RFTRYTLGN*
back to top

mRNA from alignment at H-elongata_contig142132:1206..1685-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142132.2914.1 ID=mRNA_H-elongata_contig142132.2914.1|Name=mRNA_H-elongata_contig142132.2914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig142132:1206..1685- (Himanthalia elongata Himel1 dioecious)
TTACGCCAAAAAGGATTAGCTTCTGCTGATAAAAATGTCAACCGAAAAGC TATTGAAGGCCTTGTTCATAGTTATATTCATACCGGAGGAAAAATTGGAG TTTTAGTTGAAGTTAATTGTGAAACAGATTTTGTTGCTCGTCGTGAAGAA TTTCAAGAATTAGTTCAAAATATTGCTATGCAAATTGCAGCTTCACCAGA TATTCGATATATTAATATTGAAGAAATTCCAGAAGAAGTATTTCTTGCAG AAAAGGAAATTGAATTAAAAAAGGATGATTTGAATAATAAACCTGAGAAT ATAAGAGAAAAAATTATTTTAGGTCGTGTTGAAAAAACTTTAAAAAACTT AAGTTTACTTGATCAATCATTTATTAGAAATCCAAATATTACAATTGAGG AACTGGTAAAAGAAAAGATTTCTCTTTTTGGTGAAAATATAAAAATAAAC CGATTTACTCGTTATACACTTGGAAATTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142132:1206..1685-

>mRNA_H-elongata_contig142132.2914.1 ID=mRNA_H-elongata_contig142132.2914.1|Name=mRNA_H-elongata_contig142132.2914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig142132:1206..1685- (Himanthalia elongata Himel1 dioecious)
TTACGCCAAAAAGGATTAGCTTCTGCTGATAAAAATGTCAACCGAAAAGC
TATTGAAGGCCTTGTTCATAGTTATATTCATACCGGAGGAAAAATTGGAG
TTTTAGTTGAAGTTAATTGTGAAACAGATTTTGTTGCTCGTCGTGAAGAA
TTTCAAGAATTAGTTCAAAATATTGCTATGCAAATTGCAGCTTCACCAGA
TATTCGATATATTAATATTGAAGAAATTCCAGAAGAAGTATTTCTTGCAG
AAAAGGAAATTGAATTAAAAAAGGATGATTTGAATAATAAACCTGAGAAT
ATAAGAGAAAAAATTATTTTAGGTCGTGTTGAAAAAACTTTAAAAAACTT
AAGTTTACTTGATCAATCATTTATTAGAAATCCAAATATTACAATTGAGG
AACTGGTAAAAGAAAAGATTTCTCTTTTTGGTGAAAATATAAAAATAAAC
CGATTTACTCGTTATACACTTGGAAATTAATTACGCCAAAAAGGATTAGC
TTCTGCTGATAAAAATGTCAACCGAAAAGCTATTGAAGGCCTTGTTCATA
GTTATATTCATACCGGAGGAAAAATTGGAGTTTTAGTTGAAGTTAATTGT
GAAACAGATTTTGTTGCTCGTCGTGAAGAATTTCAAGAATTAGTTCAAAA
TATTGCTATGCAAATTGCAGCTTCACCAGATATTCGATATATTAATATTG
AAGAAATTCCAGAAGAAGTATTTCTTGCAGAAAAGGAAATTGAATTAAAA
AAGGATGATTTGAATAATAAACCTGAGAATATAAGAGAAAAAATTATTTT
AGGTCGTGTTGAAAAAACTTTAAAAAACTTAAGTTTACTTGATCAATCAT
TTATTAGAAATCCAAATATTACAATTGAGGAACTGGTAAAAGAAAAGATT
TCTCTTTTTGGTGAAAATATAAAAATAAACCGATTTACTCGTTATACACT
TGGAAATTAA
back to top