mRNA_H-elongata_contig1418.2891.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 4.670e-21 Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI 291
Q S VV++ YP YE+FL+ L+LVN N G ILS SCV TNFY RL+ ATIGP+ LGALA+ Y RN HS ++ A++KH+S+ LFI+ +
Sbjct: 76 QFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFV 170
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 6.920e-19 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIV 285
Q + VV +EYP YERFLAAL+LVN NLG LS CV +TNFY RL +T+ P+A LG LA + N HS +R A +KH+S+ LFIV
Sbjct: 34 QFASVVDVEYPEIYERFLAALNLVNFNLGFFLSFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIV 126
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.090e-18 Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI 291
Q S V IEYP AY+ FL+ + +VNL+LG ILS +CV+ TNFY+RL++ATIGP+ LG L Y RN H A+R + +H+SV LF++ +
Sbjct: 713 QYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFV 807
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 1.090e-18 Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI 291
Q S V +EYP AY+ FL+ + +VNL+LG ILS +CV+ TNFY+RL++ATIGP+ LG L Y RN H A+R + +H+SV LF++ +
Sbjct: 732 QYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFV 826
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.510e-18 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIV 285
Q + VV +EYP YERFLAAL+LVN NLG LS C+ +TNFY RL +TI P+A LG LA + N HS +R A +KH+S+ LFIV
Sbjct: 56 QFASVVDVEYPEIYERFLAALNLVNFNLGYFLSFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIV 148
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.000e-13 Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFI 282
Q + YP Y+ FL AL+ VNL++G ILS SCV T+F++RL++ATIGP+ L LA+ + RN S A+R +NKH+S LF+
Sbjct: 724 QFGAIAGFVYPEEYQDFLNALTPVNLDIGFILSYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFV 815
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 8.210e-12 Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHS 228
Q S V +EYP AY+ FL+ + +VNL+LG ILSL+CV+ T+FY+RL+L TI P LG L Y RN S
Sbjct: 595 QYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSLACVYDTDFYDRLLLTTICPAVVLGLLGCTYLVARRRNRRS 668
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A836CF88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF88_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 8.990e-10 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 1 MAQISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVY---RFVVIRN--GHSIRA---------LRVARNKHISVLLFI 282
++Q + IEYP RFLAAL+++NLNLG LS +C+ + NFY++L+LAT+ P+ L Y R V++R GH R LR AR++H++V++ +
Sbjct: 617 ISQFPQITGIEYPPVLARFLAALNVLNLNLGWWLSATCLLEVNFYQQLLLATLTPLCVTAVLVATYFARRAVLLRRAAGHGERLGGDASIAEHLRRARSQHLAVIVIL 724
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 2.240e-9 Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFI 282
+ + V ++ YP+ Y+ L AL + N +L ILS+ CV +T+F++RL+++TIGPI L L Y + + S + L+ NKH+S++L +
Sbjct: 371 EFTSVANVTYPSVYQDLLTALDIFNFDLSWILSVGCVVRTDFHDRLLVSTIGPIVGLMLLTCTYACALQIHQGSSQNLQSVWNKHVSMVLLL 462
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.470e-8 Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKH 261
Q + YP Y+ FL L+ VNL++G ILS SC T+F++RL++ATIGP+ L LA+ + RN +S A+R +H
Sbjct: 483 QFGAIAGFVYPEEYQDFLNVLTPVNLDIGFILSYSCFVTTDFFDRLLIATIGPVVVLALLALTFVVGRKRNINSEAAVRALDLRH 567 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1418.2891.1 >prot_H-elongata_contig1418.2891.1 ID=prot_H-elongata_contig1418.2891.1|Name=mRNA_H-elongata_contig1418.2891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp MAQISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLback to top mRNA from alignment at H-elongata_contig1418:3631..3921+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1418.2891.1 ID=mRNA_H-elongata_contig1418.2891.1|Name=mRNA_H-elongata_contig1418.2891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig1418:3631..3921+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1418:3631..3921+ >mRNA_H-elongata_contig1418.2891.1 ID=mRNA_H-elongata_contig1418.2891.1|Name=mRNA_H-elongata_contig1418.2891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig1418:3631..3921+ (Himanthalia elongata Himel1 dioecious)back to top |