mRNA_H-elongata_contig1418.2891.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1418.2891.1
Unique NamemRNA_H-elongata_contig1418.2891.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.670e-21
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI 291
            Q S VV++ YP  YE+FL+ L+LVN N G ILS SCV  TNFY RL+ ATIGP+  LGALA+ Y     RN HS   ++ A++KH+S+ LFI+ +
Sbjct:   76 QFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFV 170          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.920e-19
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIV 285
            Q + VV +EYP  YERFLAAL+LVN NLG  LS  CV +TNFY RL  +T+ P+A LG LA  +      N HS   +R A +KH+S+ LFIV
Sbjct:   34 QFASVVDVEYPEIYERFLAALNLVNFNLGFFLSFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIV 126          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-18
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI 291
            Q S V  IEYP AY+ FL+ + +VNL+LG ILS +CV+ TNFY+RL++ATIGP+  LG L   Y     RN H   A+R  + +H+SV LF++ +
Sbjct:  713 QYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFV 807          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-18
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI 291
            Q S V  +EYP AY+ FL+ + +VNL+LG ILS +CV+ TNFY+RL++ATIGP+  LG L   Y     RN H   A+R  + +H+SV LF++ +
Sbjct:  732 QYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFV 826          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-18
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIV 285
            Q + VV +EYP  YERFLAAL+LVN NLG  LS  C+ +TNFY RL  +TI P+A LG LA  +      N HS   +R A +KH+S+ LFIV
Sbjct:   56 QFASVVDVEYPEIYERFLAALNLVNFNLGYFLSFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIV 148          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-13
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFI 282
            Q   +    YP  Y+ FL AL+ VNL++G ILS SCV  T+F++RL++ATIGP+  L  LA+ +     RN  S  A+R  +NKH+S  LF+
Sbjct:  724 QFGAIAGFVYPEEYQDFLNALTPVNLDIGFILSYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFV 815          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.210e-12
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHS 228
            Q S V  +EYP AY+ FL+ + +VNL+LG ILSL+CV+ T+FY+RL+L TI P   LG L   Y     RN  S
Sbjct:  595 QYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSLACVYDTDFYDRLLLTTICPAVVLGLLGCTYLVARRRNRRS 668          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: A0A836CF88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF88_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.990e-10
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 MAQISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVY---RFVVIRN--GHSIRA---------LRVARNKHISVLLFI 282
            ++Q   +  IEYP    RFLAAL+++NLNLG  LS +C+ + NFY++L+LAT+ P+     L   Y   R V++R   GH  R          LR AR++H++V++ +
Sbjct:  617 ISQFPQITGIEYPPVLARFLAALNVLNLNLGWWLSATCLLEVNFYQQLLLATLTPLCVTAVLVATYFARRAVLLRRAAGHGERLGGDASIAEHLRRARSQHLAVIVIL 724          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.240e-9
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFI 282
            + + V ++ YP+ Y+  L AL + N +L  ILS+ CV +T+F++RL+++TIGPI  L  L   Y   +  +  S + L+   NKH+S++L +
Sbjct:  371 EFTSVANVTYPSVYQDLLTALDIFNFDLSWILSVGCVVRTDFHDRLLVSTIGPIVGLMLLTCTYACALQIHQGSSQNLQSVWNKHVSMVLLL 462          
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.470e-8
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    7 QISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVLATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKH 261
            Q   +    YP  Y+ FL  L+ VNL++G ILS SC   T+F++RL++ATIGP+  L  LA+ +     RN +S  A+R    +H
Sbjct:  483 QFGAIAGFVYPEEYQDFLNVLTPVNLDIGFILSYSCFVTTDFFDRLLIATIGPVVVLALLALTFVVGRKRNINSEAAVRALDLRH 567          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1418.2891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FPF7_ECTSI4.670e-2152.63Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FUB5_ECTSI6.920e-1952.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE1.090e-1848.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI1.090e-1847.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHA3_9PHAE1.510e-1852.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF5_9PHAE2.000e-1344.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L874_9PHAE8.210e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CF88_9STRA8.990e-1037.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LH65_ECTSI2.240e-935.87Polymorphic outer membrane protein G/I family prot... [more]
D7FWD7_ECTSI1.470e-840.00Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1418contigH-elongata_contig1418:3631..3921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7FPF7
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size292
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.3667214-CDS-H-elongata_contig1418:3630..39211622929842.3667214-CDS-H-elongata_contig1418:3630..3921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1418 3631..3921 +
1691679179.5626993-CDS-H-elongata_contig1418:3630..39211691679179.5626993-CDS-H-elongata_contig1418:3630..3921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1418 3631..3921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1418.2891.1prot_H-elongata_contig1418.2891.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1418 3631..3921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1418.2891.1

>prot_H-elongata_contig1418.2891.1 ID=prot_H-elongata_contig1418.2891.1|Name=mRNA_H-elongata_contig1418.2891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MAQISGVVSIEYPAAYERFLAALSLVNLNLGSILSLSCVFKTNFYERLVL
ATIGPIASLGALAIVYRFVVIRNGHSIRALRVARNKHISVLLFIVLI
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mRNA from alignment at H-elongata_contig1418:3631..3921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1418.2891.1 ID=mRNA_H-elongata_contig1418.2891.1|Name=mRNA_H-elongata_contig1418.2891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig1418:3631..3921+ (Himanthalia elongata Himel1 dioecious)
ATGGCACAGATTTCCGGCGTGGTTAGCATCGAGTACCCTGCGGCGTACGA GAGATTCCTGGCAGCTCTGAGCCTCGTCAATTTGAATCTGGGGTCTATCT TGTCACTGTCGTGCGTCTTTAAGACCAATTTTTACGAACGCCTCGTTTTA GCAACTATTGGACCGATCGCAAGTCTTGGTGCGCTAGCGATTGTCTACAG ATTTGTCGTCATACGGAACGGCCACTCGATCCGTGCTCTGAGGGTAGCAA GGAATAAACACATATCCGTTTTACTCTTTATAGTCTTAATC
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Coding sequence (CDS) from alignment at H-elongata_contig1418:3631..3921+

>mRNA_H-elongata_contig1418.2891.1 ID=mRNA_H-elongata_contig1418.2891.1|Name=mRNA_H-elongata_contig1418.2891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig1418:3631..3921+ (Himanthalia elongata Himel1 dioecious)
ATGGCACAGATTTCCGGCGTGGTTAGCATCGAGTACCCTGCGGCGTACGA
GAGATTCCTGGCAGCTCTGAGCCTCGTCAATTTGAATCTGGGGTCTATCT
TGTCACTGTCGTGCGTCTTTAAGACCAATTTTTACGAACGCCTCGTTTTA
GCAACTATTGGACCGATCGCAAGTCTTGGTGCGCTAGCGATTGTCTACAG
ATTTGTCGTCATACGGAACGGCCACTCGATCCGTGCTCTGAGGGTAGCAA
GGAATAAACACATATCCGTTTTACTCTTTATAGTCTTAATCATGGCACAG
ATTTCCGGCGTGGTTAGCATCGAGTACCCTGCGGCGTACGAGAGATTCCT
GGCAGCTCTGAGCCTCGTCAATTTGAATCTGGGGTCTATCTTGTCACTGT
CGTGCGTCTTTAAGACCAATTTTTACGAACGCCTCGTTTTAGCAACTATT
GGACCGATCGCAAGTCTTGGTGCGCTAGCGATTGTCTACAGATTTGTCGT
CATACGGAACGGCCACTCGATCCGTGCTCTGAGGGTAGCAAGGAATAAAC
ACATATCCGTTTTACTCTTTATAGTCTTAATC
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