mRNA_H-elongata_contig14145.2878.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14145.2878.1
Unique NamemRNA_H-elongata_contig14145.2878.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 3.410e-134
Identity = 198/274 (72.26%), Postives = 236/274 (86.13%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
            ++L  TWQ++  I  ++GRH FVG FYG LWWRLG+G+VYER+GVIFFSLVFVM+GNQQNIPRIF DRLLFYREKGAGVYGAVEYWWSI +AQ+PLAVL T  YG  +YF++G +++ W+PF YF+LVI+LCNL+ L+FCQMLAAATR QDTAVSLFP+ LFFFIAF G IVRLPTLP YL +WAPTISF RWAMEGLVINEF GNE+ IFP PEG+PITPEQIY +FLEAYGFG+ G+  ++LG VLWIL+ +LV+FRLL L+ LKY++FERR
Sbjct: 1533 RELVTTWQDKARIFQSLGRHAFVGAFYGALWWRLGVGRVYERVGVIFFSLVFVMLGNQQNIPRIFQDRLLFYREKGAGVYGAVEYWWSIVIAQIPLAVLTTATYGGFVYFMSGLNHNGWEPFGYFLLVIVLCNLVALSFCQMLAAATRLQDTAVSLFPVFLFFFIAFGGMIVRLPTLPSYLHAWAPTISFVRWAMEGLVINEFEGNEDYIFPAPEGVPITPEQIYESFLEAYGFGQRGNHSDVLGQVLWILVASLVMFRLLTLIGLKYISFERR 1806          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 7.050e-134
Identity = 196/274 (71.53%), Postives = 232/274 (84.67%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
            ++L  TWQ++  I  ++GRH FVG FYG LWWRLG+G+VYER+GVIFFSLVFVM+GNQQNIPRIF DRLLFYREKGAGVYGAVEYWWSI +AQ+PLAVL T  YG  +YF++G +++ W+PF YF+LVI+LCNL+ L+FCQMLAA TR QDTAVSLFP+ LFFFIAF G IVRLPTLP YL +WAPTISF RWAMEGLVINEF GNE  IFP PEG PI+PE IY +FLEAYGFG+ G+  ++LG VLWIL+ +LV+FRLL L+ LKY+TFERR
Sbjct: 1141 RELVTTWQDKARIFQSLGRHAFVGAFYGALWWRLGVGRVYERVGVIFFSLVFVMLGNQQNIPRIFQDRLLFYREKGAGVYGAVEYWWSIVIAQIPLAVLTTATYGGFVYFMSGLNHNGWEPFGYFLLVIVLCNLVALSFCQMLAAGTRLQDTAVSLFPVFLFFFIAFGGMIVRLPTLPSYLHAWAPTISFVRWAMEGLVINEFEGNENYIFPAPEGTPISPEDIYESFLEAYGFGQRGNHSDVLGQVLWILVASLVMFRLLTLIGLKYITFERR 1414          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.280e-62
Identity = 116/274 (42.34%), Postives = 170/274 (62.04%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
            +Q     +NRR ++  + RHV V +FYG+L+W++    +  R+ ++FF+++FVM+GNQQ+IP ++ DRLL+YREKGA VYG   YW +   + +P  +LNT +Y  ++Y +AG H++ +  F YF LV +LC+L  L FCQ+L+       TAV++FP SLF F+ FAGFIVRLP+LP ++ +W P  SFARWA +GLVINE  GN    +     +  +P   Y   +   GF      G    + + ILL N+VLFR L  L L ++  E R
Sbjct: 1005 RQFLKMRRNRRLVVVGLIRHVLVALFYGSLYWQVAPTAIQSRLSLLFFAIMFVMLGNQQSIPAVYEDRLLYYREKGAHVYGPYSYWMTCAASFIPQIILNTLLYSGIMYPMAGLHSN-FACFGYFYLVTMLCSLCALFFCQLLSITLPNPQTAVAVFPASLFIFVLFAGFIVRLPSLPSWIGAWCPDASFARWAFQGLVINELDGNARVSYKDLPAVYYSPNP-YQTMMSNLGF-----QGYSKWFTVPILLLNMVLFRGLTYLSLIFINHESR 1271          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A482RNU1_9ARCH (ABC2_membrane domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNU1_9ARCH)

HSP 1 Score: 180 bits (456), Expect = 6.260e-52
Identity = 98/271 (36.16%), Postives = 161/271 (59.41%), Query Frame = 1
Query:   22 QNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYE----RIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
            ++R+  + A  RHV VG+FYG+++++L  G        R G+ FFSL+F++IG+QQ IP    +RL+FYRE+GA  YGA  YW S  L Q+PL V N   Y  + Y++ G  +++ K F YF +++++C++ GL     ++A + +   A+S FP+ +FF ++FAGF++ LP  P +L +WAP IS+ R+AM+GL +NEF+ N++        +P+    I+   L      KV     ++ ++L        L+ L+ L  LK++ FE R
Sbjct:   28 RDRKATVVATFRHVLVGLFYGSIYYQLSGGSTSSAYSNRSGIFFFSLLFMIIGHQQAIPTFLEERLVFYRERGAKAYGAFPYWISTWLLQIPLIVFNVFWYSLICYYMVGLKDES-KAFGYFFVIMMMCSITGLFNAGFVSAISASTQIALSFFPVVMFFAVSFAGFLIYLPQFPPWLGNWAPYISYMRYAMQGLTVNEFQSNDD--------LPLGESYIHE--LGYQHLNKVQCATIMIPFIL--------LYALMFLAALKFIDFEER 279          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A482S1F1_9ARCH (ABC2_membrane domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1F1_9ARCH)

HSP 1 Score: 143 bits (361), Expect = 4.090e-38
Identity = 73/194 (37.63%), Postives = 120/194 (61.86%), Query Frame = 1
Query:   55 RHVFVGIFYGTLWWRLGLGKVY----ERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEE 624
            RHV  G+F+GT++++   G  +     R+ V+FFSL+FV++ +  +I  +  DR  +YRE+   VY A+ YW S+ L Q+P  V+N  +Y S +Y+L G   +  + F +F+ ++++ + +G+  CQ+LA+ + +   AVSLFP+SLFF  AF GFIV +P  P +L  W    S+ R+  + LV+NEF  N +
Sbjct:   11 RHVITGLFFGTVFYQQSGGVDFTAYNNRLSVLFFSLLFVLMSHLIDIANMLQDRPYYYRERS--VYDALAYWLSVTLVQIPFNVINVALYSSTVYYLVGLRAEA-QYFCFFLYILLMADFVGMMVCQILASVSSSAQVAVSLFPVSLFFCTAFEGFIVYIPAFPPWLG-WLSFASYLRYGFQALVLNEFDDNND 200          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A482SY90_9ARCH (ABC2_membrane domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY90_9ARCH)

HSP 1 Score: 127 bits (320), Expect = 4.510e-32
Identity = 85/269 (31.60%), Postives = 139/269 (51.67%), Query Frame = 1
Query:   40 LTAVGRHVFVGIFYGTLWWRLGLG---KVYE-RIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGW----VLWILLGNLVLFRLLGLLCLKYVTFERR 822
            L  V RH  +G+FYGT++++   G     Y  R+ ++FFSL+FV++ +Q++I  I  DR  FYRE+   VY    YW +  L Q+P  + N  +Y  L+YF+ GF  D    F +F  ++++ ++IG+  CQ+++  +     A+SLFP+SLFF  AF GFIV +P+               R++ + LV+NE   N +        +P+        ++E  GF  +        W    VLWI +   ++    G   L++V FE+R
Sbjct:    3 LLFVIRHTLIGLFYGTVYYQQPNGTDTSAYNNRLSMLFFSLLFVLMSHQEDIANIIEDRAFFYRERS--VYSPFAYWLANLLVQIPFNIFNVTVYSLLVYFMVGFRPDVMH-FLFFWYIMLMTDVIGMMVCQVVSNCSSNAQVAMSLFPVSLFFSTAFEGFIVFIPSXXXXXXXXXXXXXX-RYSFQALVLNELGHNSK--------LPLAS-----TYIEQLGFDSLSK------WQCADVLWIFVATALVS---GYSVLRFVNFEKR 245          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A225UUJ8_9STRA (ABC transporter (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UUJ8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.160e-28
Identity = 86/278 (30.94%), Postives = 148/278 (53.24%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL------VLFRLLGLLCLKYVTFE 816
            +QL  T++N+  I   +     +G+ + T+++     +V   +GVIF +++F+ +G    IP    +R +FY+++GA  +    Y  +  ++Q+PLA++ T I+GSL+Y+L GF ++ +K F  F L+++L NL    +   L+A  R  D A  L  +S+  F+ FAGFIV    +PDYL  WA  IS   W+++ L IN++R     +  + +G+    E  YG  +  Y  G  G   E      WI+ G +      V+F  L  L L+++ +E
Sbjct:  357 RQLMVTYRNKPFIFGRLLMIFIMGLLFCTVFYDFDPTQVSVVMGVIFATVMFLSMGQSSQIPTYMAERDVFYKQRGANFFRTGSYVLATSVSQIPLAIVETIIFGSLVYWLCGFVSE-FKLFVIFELILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSQIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVC-LYDGVDYCTE--YGLKMGEYYLGLFGMDTE----KEWIVYGIIYTAAMYVVFMFLSYLALEFIRYE 625          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A6A4E8W1_9STRA (ABC transporter G family member 34 n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E8W1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.490e-28
Identity = 86/275 (31.27%), Postives = 147/275 (53.45%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL---VLFRLLGLLCLKYVTFE 816
            +QL  T++N+  I   +     +G+ + T+++     +V   +GVIF +++F+ +G    IP    +R +FY+++GA  +    Y  +  ++Q+PLAV+   I+GSL+Y++ GF  +  K F  F L+++L NL    +   L+A  R  D A  L  +S+  F+ FAGFIV    +PDYL  WA  IS   W+++ L IN++R     +  V +G+    E  YG  +  Y  G  G   E   W+++ ++  L   V+F  L  L L+Y+ +E
Sbjct:  445 RQLMVTYRNKPFIFGRLLMIFIMGLLFCTVFYSFDPTQVSVVMGVIFATVMFLSMGQSSQIPTYMAEREVFYKQRGANFFRTASYVLATSVSQIPLAVVEKIIFGSLVYWICGFVLEA-KLFIIFELILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSEIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVC-VYDGVDYCSE--YGLKMGEYYLGLFGMDTEK-EWIVYGVIYTLAMYVVFMFLSYLSLEYIRYE 713          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A329R8M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R8M4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.390e-28
Identity = 86/279 (30.82%), Postives = 146/279 (52.33%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFR-GNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL------VLFRLLGLLCLKYVTFE 816
            +Q   T++N+  I   +   + +G+ Y T+++     +V   +GVIF +++F+ +G    IP    +R +FY+++GA  +    Y  +   +Q+PLA++ T I+GSL+Y++ GF ++  K F  F  +++L NL    +   L+A  R  D A  L  +S+  F+ FAGFIV    +PDYL  WA  IS   W+++ L IN++R G  +  F   +G+    E  YG  +  Y  G  G   E      WI+ G +      V+F  L  L L+++ +E
Sbjct:  164 RQSMVTYRNKPFIFGRLLMIIIMGLLYSTVFYDFDPKEVSVVMGVIFATVMFLSMGQSSQIPTYMAERDVFYKQRGANFFRTASYVLATSASQIPLAIVETLIFGSLVYWMCGFVSEA-KLFLIFEFILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSQIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVCFY--DGVDYCSE--YGLRMGEYYLGLFGMDTE----KEWIVYGIIYTAAMYVVFMFLSYLALEFIRYE 432          
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A2P4XIL0_9STRA (ABC Superfamily (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIL0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.940e-28
Identity = 86/278 (30.94%), Postives = 145/278 (52.16%), Query Frame = 1
Query:    1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL------VLFRLLGLLCLKYVTFE 816
            +QL  T++N+  I   +     +G+   T+++     +V   +GVIF +++F+ +G    IP    +R +FY+++GA  +    Y  +   +Q+PLAV+ T I+GSL+Y++ GF ++  K F  F L+++L NL    +   L+A  R  D A  L  +S+  F+ FAGFIV    +PDYL  WA  IS   W+++ L IN++R     +  + +G+    E  YG  +  Y  G  G   E      WI+ G +      V+F  L  L L+++ +E
Sbjct:  438 RQLMVTYRNKPFIFGRLLMIFIMGLLICTVFYDFDPTQVSVVMGVIFTTIMFLSMGQSSQIPTYMAERDVFYKQRGANFFRTASYVLATSASQIPLAVVETLIFGSLVYWICGFVSEA-KLFIIFELILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSQIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVC-LSDGVDYCTE--YGLTMGEYYLGLFGMDTE----KEWIVYGIIYTAAMYVVFMFLSYLALEFIRYE 706          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK8_9PHAE3.410e-13472.26ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSM1_ECTSI7.050e-13471.53ABC transporter domain-containing protein n=1 Tax=... [more]
W7TLH8_9STRA5.280e-6242.34Abc transporter g family member 29 n=2 Tax=Monodop... [more]
A0A482RNU1_9ARCH6.260e-5236.16ABC2_membrane domain-containing protein n=1 Tax=ar... [more]
A0A482S1F1_9ARCH4.090e-3837.63ABC2_membrane domain-containing protein n=1 Tax=ar... [more]
A0A482SY90_9ARCH4.510e-3231.60ABC2_membrane domain-containing protein n=1 Tax=ar... [more]
A0A225UUJ8_9STRA2.160e-2830.94ABC transporter (Fragment) n=1 Tax=Phytophthora me... [more]
A0A6A4E8W1_9STRA2.490e-2831.27ABC transporter G family member 34 n=1 Tax=Phytoph... [more]
A0A329R8M4_9STRA3.390e-2830.82Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A2P4XIL0_9STRA3.940e-2830.94ABC Superfamily (Fragment) n=1 Tax=Phytophthora pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14145contigH-elongata_contig14145:173..4285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.7
Seed ortholog evalue2.1e-114
Seed eggNOG ortholog2880.D8LSM1
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-09_002160.1
Exons4
Model size825
Cds size825
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14145.2878.1prot_H-elongata_contig14145.2878.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14145 173..4285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.534461-CDS-H-elongata_contig14145:172..4511622929841.534461-CDS-H-elongata_contig14145:172..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 173..451 +
1691679179.2678905-CDS-H-elongata_contig14145:172..4511691679179.2678905-CDS-H-elongata_contig14145:172..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 173..451 +
1622929841.552217-CDS-H-elongata_contig14145:1245..13891622929841.552217-CDS-H-elongata_contig14145:1245..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 1246..1389 +
1691679179.2785-CDS-H-elongata_contig14145:1245..13891691679179.2785-CDS-H-elongata_contig14145:1245..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 1246..1389 +
1622929841.566034-CDS-H-elongata_contig14145:3734..38991622929841.566034-CDS-H-elongata_contig14145:3734..3899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 3735..3899 +
1691679179.2857993-CDS-H-elongata_contig14145:3734..38991691679179.2857993-CDS-H-elongata_contig14145:3734..3899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 3735..3899 +
1622929841.5811658-CDS-H-elongata_contig14145:4048..42851622929841.5811658-CDS-H-elongata_contig14145:4048..4285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 4049..4285 +
1691679179.293365-CDS-H-elongata_contig14145:4048..42851691679179.293365-CDS-H-elongata_contig14145:4048..4285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14145 4049..4285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14145.2878.1

>prot_H-elongata_contig14145.2878.1 ID=prot_H-elongata_contig14145.2878.1|Name=mRNA_H-elongata_contig14145.2878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSL
VFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLN
TCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQ
DTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVI
NEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWI
LLGNLVLFRLLGLLCLKYVTFERR*
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mRNA from alignment at H-elongata_contig14145:173..4285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14145.2878.1 ID=mRNA_H-elongata_contig14145.2878.1|Name=mRNA_H-elongata_contig14145.2878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4113bp|location=Sequence derived from alignment at H-elongata_contig14145:173..4285+ (Himanthalia elongata Himel1 dioecious)
AAACAGTTAACGGCGACCTGGCAAAACCGCCGCGAAATCTTGACGGCCGT CGGGAGACATGTCTTCGTCGGAATCTTTTACGGTACGCTCTGGTGGAGGC TGGGACTGGGAAAGGTGTACGAGAGGATTGGCGTTATTTTCTTCTCCTTG GTGTTCGTCATGATCGGCAACCAACAGAACATTCCTAGAATCTTCTTCGA TCGTCTCCTGTTTTACCGAGAGAAGGGCGCCGGGGTGTACGGGGCGGTGG AGTACTGGTGGTCGATCGGCCTCGCACAGGTGTGTGCTTGACCATACGAG ATATCACGATTGCTGCTGTGAAATTTTAGGATCAGACACTCACACGAGTA GGCACTATCGTTGGTGCCATTCGAGGGGGGTGGAGGGGGTGGGGTCGTGC TTAAGTTAAGCGCATGCCGTATCCTAATCCTATGCCGAGGCGGAGCGATA TGCCGGGTTTTTACCAGCCAGAATGTGCTTCACAAGGATAATACCAGCTT TTAGTTTTCATCTTTTATGTATGGGTATATGCAATGTTTAGATTAGAAAC CCCGGGTGATCAAATGTTGCCTATTCAGCGGACGTTATCGACTATTCTAT TCTATACTATACTATACTATACTATACTATACTATACTGTACTATACTAT ACTTTTGGTTGCTCTTTGGCTTTTCTGCAATCAACCGTTGTTTACCAGGC ATCCTATAGGATTGAATGGGATACGTTTCGACCGAAGTCTCTTGAGCTCA CACGAAACACTGCATGAACTCCGCCACGGTATTGGGTGTTGGGTGTCTAG GCCTACATCCCCCCTCCCAGTTTTCCATACTCCCTAGTTATCTCAGATTT CTTGTATATACAAAAATCAAGTAATTTGTAATTTTGACATGTTATAAAAA GCCCAACAACTTCGAACTTAGTGTACATACATACAGTATATATATACATT CGGAAAAATGGGAATGAGCCTATAAATAATATGGAGATTATCTCTCTCGT GTGCCAAGTTGAGAATGCTTGTTGCTTATCGTGCGGTTTCACCTTGCCCC CTCCTTAAATGTGCAACACCCAGTTGCCCTTGGCGGTTCTCAACACCTGC ATATATGGCTCCTTGCTATATTTCTTGGCCGGCTTCCACAACGACACCTG GAAGCCTTTCGCCTACTTCATGCTGGTGATCATCCTCTGCAACCTGATCG GGCTGGCGTTTTGCCAGGTGTGTTTTGGGGTTTGTAACAGCAGGGTCTGT CCAATCCCGTATATCGTAAGTGACTTGCCTTGTGTATATATATAAATATA TAATAATGCATGCCTTGGGGACGGAAACATCTATTCTCCCCCTCTCCTCC CTACCATAATTACCTTTTCGTCGCGATAGCCAGCTTAGCATTCTCGCGAA GCGCTATGGTTTAGGAAATATCTTTTCGAGTTCATGCCCTGATATTTCTC TCTTAATTGCTGTTGTTGTGGAAAAAATGGACAAGAGGGCACCGCTCCCA GGAGAGAGGAGGGGAGGGGCGGGCCGCAGTCAAGTTGACCATTGTATGTC GTAGCTGTTATACCATTGATCACACGTCAGTCCTCGGAAAGACGGAATTT CCTACGTGATCGATCGACAATGGCTAGGTAGGGAAAAAGATCGTGCTGAC GCGGGACGGGACGGACGAACCCGTTTCGCGAGACCGAATCATTAGGCGCG AACAGAGACAGGGATCCCCCCCCCCCAACTCCCCCTCTGTTCCGCTGACC GCGGGCAGGATTGACCGCCATATGCGGTTGATTCATACGATACTGCTATA CTATGTGAGGCTTCGCGAAAGGTATTCCAAACATGTTCTCATTCTGTCAA CATCATATTTCGCCTTCTCTGGATAAGTCTTATCCCCAGTTTAGCTACCA CCTCCGTGTGCCTTTCTCGTGCTTCAAAAGTCTCTATATCACAAACTTCA ATTTTTCCCAGGTTATTCACATAACGGACACTCCGCCATCACTGTGTGGA TACGGTCTTCACCCTGTCATCACCTGTCCCTTATCATCCCGAGTCGAAAT CGCCGTTGTGCTTGTCCTCGTCCTTCTCATCTACTCTCCTAAATCCCCGG CTCCCTTGCCGGAGGTGATTGTCTCCATTAACCATTAACCGTTAACCATT AAGAGTCCTGAACTTGACCTTGACCTTGACCTTTGTCCCTTCATCCAAGT AGTTCTTGAAGGCTACTCCTTCGTCTATCATTCCGTATAAAGTTTACAGC CTCGTTAGAACCTAATTCGTTGCTTCCGTAAATTCCTGATCCTATCTGCC TACAAAAGCGTCCGTTATCTCCCCTCTGAGATTCACCCAGATGTTTCCTT GCCAACGTCATCGTTTGGAACATATCCCATCCTTTCCGTGCTCTATGTAT TATACCAACCCACTCGATGGGGTGCCGATACCCTTTTTGCCTTGCTTTCC CACTCCGCCCCCTCTTGCTGTTTTCGACAATCTCTCGTCTAAACCCCATT GGTTGCAAACGGTTCTACTATGAAAAACATTGCGGCTTTCTTACGCCTCT TTCCGTGTTCGCAGCGGCTGAATGGTTGAATGCCCAACTCTGACCCTTAC ATTATTAAAAACCCTGGACTCATTCCAACCCACGGAACATTCACGCCTTC TTAGTACCATGAGAGGTGCAGTTCAGGGGACCAACTATCGTCGAGTTCTA ATGTGGACATCATTACTACCTTTGAGCAAAAAAAAAATTACACGTGATTG ATCAAACCAGAGCCTAGGGGGGTGAATTGGGTGTGGTGGTTTGGAAGGGT TAGGCACAGGATTGTACATATGTCTCAGTGAAATTGGGAGGGAGAAAAAA GTTACGAGGGTCACATGTTTACTACATTTAAGCTCAAAACCGCTTGGGGC ACCCTAGTGTGATCTTTGCTGCTTTCATCTGTATGCCGTTTCCAACTCTT TTATATTTTCGTCTTTCATGTTCATACTAATTCTCCGGCGTCCTCTACCC TTAAATGTCATACTCTTCCACCCGTTCCCGTGTTCGTAGCGACTAAATGG CTGACTGCCCAACTCTGACCCTTATTTTTGCATTACTATATGTTGCGTGC TTGGGGCACCCTATGAATAGTATGATATTTTCTGCTTTCATATGTGTGCC GTTTCCAACTCTTTTATATTTTCGTCTCCCATGTTCATACTTCTCCGGTG TACTCTACTCTTAGGGCTCATACCCTGCCACCCGCGGGAGGTTCGCCTAG ATCCATCGCATGTATCGCTAAGTCGCCGCCTGGAATAAACAGCTTCGACA AAATTCCCCTAACTAGCTTTGTGCCATCCGGGGGTTTTCCCCCGGATAAA CATTCCTTGAAATAAAAGAACTCCCCCCCTGTGTCGTGAGCCACAGATAG TAGGATGAAACAAGCTGGGAAGAATCAATAAAACATGAATCGTATTAAAC TAATATTAATAATAGCTTGATGTCTGAAAAATTATTCACCAAAATTTTGC TAAAAACAGGAAAACCCCCCAATAACATGAATAATTACCTTACGTCCGGT TTTGGCGTACAGATGTTGGCGGCGGCGACGCGAACGCAAGACACAGCCGT CTCCCTTTTCCCCATCTCCCTGTTCTTTTTCATTGCCTTTGCTGGGTTTA TTGTTCGCCTACCCACGCTGCCCGACTACCTCGCCTCCTGGGCGCCTACG ATCAGCTTCGCCCGGTGGGCGATGGAGGTGAGAGGCCAATGTTTTTTTTC GGAGGGTGGGTGGTGGGGGGGAAGTTTGCGTGTTGTGTATTTTTTCTCCT GTATGGGGTGCGTATTTCTTAGGCCTCATTCTCCCCTTTCCAATATCTTG TTAACCCCGTGTTGGTAATGCGGCAGGGCTTGGTGATCAACGAATTTAGA GGCAATGAAGAAGCTATTTTCCCGGTGCCTGAAGGGATTCCGATCACGCC AGAACAGATTTACGGAGCATTTTTGGAGGCGTACGGCTTCGGAAAGGTCG GGGATGGCGGCGAGATCCTGGGGTGGGTGCTGTGGATCTTGCTTGGAAAC CTGGTGCTGTTCCGGTTGTTGGGCCTGCTGTGCCTTAAGTATGTGACGTT CGAGCGTCGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14145:173..4285+

>mRNA_H-elongata_contig14145.2878.1 ID=mRNA_H-elongata_contig14145.2878.1|Name=mRNA_H-elongata_contig14145.2878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig14145:173..4285+ (Himanthalia elongata Himel1 dioecious)
AAACAGTTAACGGCGACCTGGCAAAACCGCCGCGAAATCTTGACGGCCGT
CGGGAGACATGTCTTCGTCGGAATCTTTTACGGTACGCTCTGGTGGAGGC
TGGGACTGGGAAAGGTGTACGAGAGGATTGGCGTTATTTTCTTCTCCTTG
GTGTTCGTCATGATCGGCAACCAACAGAACATTCCTAGAATCTTCTTCGA
TCGTCTCCTGTTTTACCGAGAGAAGGGCGCCGGGGTGTACGGGGCGGTGG
AGTACTGGTGGTCGATCGGCCTCGCACAGAAACAGTTAACGGCGACCTGG
CAAAACCGCCGCGAAATCTTGACGGCCGTCGGGAGACATGTCTTCGTCGG
AATCTTTTACGGTACGCTCTGGTGGAGGCTGGGACTGGGAAAGGTGTACG
AGAGGATTGGCGTTATTTTCTTCTCCTTGGTGTTCGTCATGATCGGCAAC
CAACAGAACATTCCTAGAATCTTCTTCGATCGTCTCCTGTTTTACCGAGA
GAAGGGCGCCGGGGTGTACGGGGCGGTGGAGTACTGGTGGTCGATCGGCC
TCGCACAGTTGCCCTTGGCGGTTCTCAACACCTGCATATATGGCTCCTTG
CTATATTTCTTGGCCGGCTTCCACAACGACACCTGGAAGCCTTTCGCCTA
CTTCATGCTGGTGATCATCCTCTGCAACCTGATCGGGCTGGCGTTTTGCC
AGTTGCCCTTGGCGGTTCTCAACACCTGCATATATGGCTCCTTGCTATAT
TTCTTGGCCGGCTTCCACAACGACACCTGGAAGCCTTTCGCCTACTTCAT
GCTGGTGATCATCCTCTGCAACCTGATCGGGCTGGCGTTTTGCCAGATGT
TGGCGGCGGCGACGCGAACGCAAGACACAGCCGTCTCCCTTTTCCCCATC
TCCCTGTTCTTTTTCATTGCCTTTGCTGGGTTTATTGTTCGCCTACCCAC
GCTGCCCGACTACCTCGCCTCCTGGGCGCCTACGATCAGCTTCGCCCGGT
GGGCGATGGAGATGTTGGCGGCGGCGACGCGAACGCAAGACACAGCCGTC
TCCCTTTTCCCCATCTCCCTGTTCTTTTTCATTGCCTTTGCTGGGTTTAT
TGTTCGCCTACCCACGCTGCCCGACTACCTCGCCTCCTGGGCGCCTACGA
TCAGCTTCGCCCGGTGGGCGATGGAGGGCTTGGTGATCAACGAATTTAGA
GGCAATGAAGAAGCTATTTTCCCGGTGCCTGAAGGGATTCCGATCACGCC
AGAACAGATTTACGGAGCATTTTTGGAGGCGTACGGCTTCGGAAAGGTCG
GGGATGGCGGCGAGATCCTGGGGTGGGTGCTGTGGATCTTGCTTGGAAAC
CTGGTGCTGTTCCGGTTGTTGGGCCTGCTGTGCCTTAAGTATGTGACGTT
CGAGCGTCGCTAAGGCTTGGTGATCAACGAATTTAGAGGCAATGAAGAAG
CTATTTTCCCGGTGCCTGAAGGGATTCCGATCACGCCAGAACAGATTTAC
GGAGCATTTTTGGAGGCGTACGGCTTCGGAAAGGTCGGGGATGGCGGCGA
GATCCTGGGGTGGGTGCTGTGGATCTTGCTTGGAAACCTGGTGCTGTTCC
GGTTGTTGGGCCTGCTGTGCCTTAAGTATGTGACGTTCGAGCGTCGCTAA
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