mRNA_H-elongata_contig14145.2878.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 3.410e-134 Identity = 198/274 (72.26%), Postives = 236/274 (86.13%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
++L TWQ++ I ++GRH FVG FYG LWWRLG+G+VYER+GVIFFSLVFVM+GNQQNIPRIF DRLLFYREKGAGVYGAVEYWWSI +AQ+PLAVL T YG +YF++G +++ W+PF YF+LVI+LCNL+ L+FCQMLAAATR QDTAVSLFP+ LFFFIAF G IVRLPTLP YL +WAPTISF RWAMEGLVINEF GNE+ IFP PEG+PITPEQIY +FLEAYGFG+ G+ ++LG VLWIL+ +LV+FRLL L+ LKY++FERR
Sbjct: 1533 RELVTTWQDKARIFQSLGRHAFVGAFYGALWWRLGVGRVYERVGVIFFSLVFVMLGNQQNIPRIFQDRLLFYREKGAGVYGAVEYWWSIVIAQIPLAVLTTATYGGFVYFMSGLNHNGWEPFGYFLLVIVLCNLVALSFCQMLAAATRLQDTAVSLFPVFLFFFIAFGGMIVRLPTLPSYLHAWAPTISFVRWAMEGLVINEFEGNEDYIFPAPEGVPITPEQIYESFLEAYGFGQRGNHSDVLGQVLWILVASLVMFRLLTLIGLKYISFERR 1806
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 7.050e-134 Identity = 196/274 (71.53%), Postives = 232/274 (84.67%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
++L TWQ++ I ++GRH FVG FYG LWWRLG+G+VYER+GVIFFSLVFVM+GNQQNIPRIF DRLLFYREKGAGVYGAVEYWWSI +AQ+PLAVL T YG +YF++G +++ W+PF YF+LVI+LCNL+ L+FCQMLAA TR QDTAVSLFP+ LFFFIAF G IVRLPTLP YL +WAPTISF RWAMEGLVINEF GNE IFP PEG PI+PE IY +FLEAYGFG+ G+ ++LG VLWIL+ +LV+FRLL L+ LKY+TFERR
Sbjct: 1141 RELVTTWQDKARIFQSLGRHAFVGAFYGALWWRLGVGRVYERVGVIFFSLVFVMLGNQQNIPRIFQDRLLFYREKGAGVYGAVEYWWSIVIAQIPLAVLTTATYGGFVYFMSGLNHNGWEPFGYFLLVIVLCNLVALSFCQMLAAGTRLQDTAVSLFPVFLFFFIAFGGMIVRLPTLPSYLHAWAPTISFVRWAMEGLVINEFEGNENYIFPAPEGTPISPEDIYESFLEAYGFGQRGNHSDVLGQVLWILVASLVMFRLLTLIGLKYITFERR 1414
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA) HSP 1 Score: 221 bits (563), Expect = 5.280e-62 Identity = 116/274 (42.34%), Postives = 170/274 (62.04%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
+Q +NRR ++ + RHV V +FYG+L+W++ + R+ ++FF+++FVM+GNQQ+IP ++ DRLL+YREKGA VYG YW + + +P +LNT +Y ++Y +AG H++ + F YF LV +LC+L L FCQ+L+ TAV++FP SLF F+ FAGFIVRLP+LP ++ +W P SFARWA +GLVINE GN + + +P Y + GF G + + ILL N+VLFR L L L ++ E R
Sbjct: 1005 RQFLKMRRNRRLVVVGLIRHVLVALFYGSLYWQVAPTAIQSRLSLLFFAIMFVMLGNQQSIPAVYEDRLLYYREKGAHVYGPYSYWMTCAASFIPQIILNTLLYSGIMYPMAGLHSN-FACFGYFYLVTMLCSLCALFFCQLLSITLPNPQTAVAVFPASLFIFVLFAGFIVRLPSLPSWIGAWCPDASFARWAFQGLVINELDGNARVSYKDLPAVYYSPNP-YQTMMSNLGF-----QGYSKWFTVPILLLNMVLFRGLTYLSLIFINHESR 1271
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A482RNU1_9ARCH (ABC2_membrane domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNU1_9ARCH) HSP 1 Score: 180 bits (456), Expect = 6.260e-52 Identity = 98/271 (36.16%), Postives = 161/271 (59.41%), Query Frame = 1
Query: 22 QNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYE----RIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNLVLFRLLGLLCLKYVTFERR 822
++R+ + A RHV VG+FYG+++++L G R G+ FFSL+F++IG+QQ IP +RL+FYRE+GA YGA YW S L Q+PL V N Y + Y++ G +++ K F YF +++++C++ GL ++A + + A+S FP+ +FF ++FAGF++ LP P +L +WAP IS+ R+AM+GL +NEF+ N++ +P+ I+ L KV ++ ++L L+ L+ L LK++ FE R
Sbjct: 28 RDRKATVVATFRHVLVGLFYGSIYYQLSGGSTSSAYSNRSGIFFFSLLFMIIGHQQAIPTFLEERLVFYRERGAKAYGAFPYWISTWLLQIPLIVFNVFWYSLICYYMVGLKDES-KAFGYFFVIMMMCSITGLFNAGFVSAISASTQIALSFFPVVMFFAVSFAGFLIYLPQFPPWLGNWAPYISYMRYAMQGLTVNEFQSNDD--------LPLGESYIHE--LGYQHLNKVQCATIMIPFIL--------LYALMFLAALKFIDFEER 279
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A482S1F1_9ARCH (ABC2_membrane domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1F1_9ARCH) HSP 1 Score: 143 bits (361), Expect = 4.090e-38 Identity = 73/194 (37.63%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 55 RHVFVGIFYGTLWWRLGLGKVY----ERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEE 624
RHV G+F+GT++++ G + R+ V+FFSL+FV++ + +I + DR +YRE+ VY A+ YW S+ L Q+P V+N +Y S +Y+L G + + F +F+ ++++ + +G+ CQ+LA+ + + AVSLFP+SLFF AF GFIV +P P +L W S+ R+ + LV+NEF N +
Sbjct: 11 RHVITGLFFGTVFYQQSGGVDFTAYNNRLSVLFFSLLFVLMSHLIDIANMLQDRPYYYRERS--VYDALAYWLSVTLVQIPFNVINVALYSSTVYYLVGLRAEA-QYFCFFLYILLMADFVGMMVCQILASVSSSAQVAVSLFPVSLFFCTAFEGFIVYIPAFPPWLG-WLSFASYLRYGFQALVLNEFDDNND 200
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A482SY90_9ARCH (ABC2_membrane domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY90_9ARCH) HSP 1 Score: 127 bits (320), Expect = 4.510e-32 Identity = 85/269 (31.60%), Postives = 139/269 (51.67%), Query Frame = 1
Query: 40 LTAVGRHVFVGIFYGTLWWRLGLG---KVYE-RIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGW----VLWILLGNLVLFRLLGLLCLKYVTFERR 822
L V RH +G+FYGT++++ G Y R+ ++FFSL+FV++ +Q++I I DR FYRE+ VY YW + L Q+P + N +Y L+YF+ GF D F +F ++++ ++IG+ CQ+++ + A+SLFP+SLFF AF GFIV +P+ R++ + LV+NE N + +P+ ++E GF + W VLWI + ++ G L++V FE+R
Sbjct: 3 LLFVIRHTLIGLFYGTVYYQQPNGTDTSAYNNRLSMLFFSLLFVLMSHQEDIANIIEDRAFFYRERS--VYSPFAYWLANLLVQIPFNIFNVTVYSLLVYFMVGFRPDVMH-FLFFWYIMLMTDVIGMMVCQVVSNCSSNAQVAMSLFPVSLFFSTAFEGFIVFIPSXXXXXXXXXXXXXX-RYSFQALVLNELGHNSK--------LPLAS-----TYIEQLGFDSLSK------WQCADVLWIFVATALVS---GYSVLRFVNFEKR 245
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A225UUJ8_9STRA (ABC transporter (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UUJ8_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.160e-28 Identity = 86/278 (30.94%), Postives = 148/278 (53.24%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL------VLFRLLGLLCLKYVTFE 816
+QL T++N+ I + +G+ + T+++ +V +GVIF +++F+ +G IP +R +FY+++GA + Y + ++Q+PLA++ T I+GSL+Y+L GF ++ +K F F L+++L NL + L+A R D A L +S+ F+ FAGFIV +PDYL WA IS W+++ L IN++R + + +G+ E YG + Y G G E WI+ G + V+F L L L+++ +E
Sbjct: 357 RQLMVTYRNKPFIFGRLLMIFIMGLLFCTVFYDFDPTQVSVVMGVIFATVMFLSMGQSSQIPTYMAERDVFYKQRGANFFRTGSYVLATSVSQIPLAIVETIIFGSLVYWLCGFVSE-FKLFVIFELILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSQIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVC-LYDGVDYCTE--YGLKMGEYYLGLFGMDTE----KEWIVYGIIYTAAMYVVFMFLSYLALEFIRYE 625
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A6A4E8W1_9STRA (ABC transporter G family member 34 n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E8W1_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.490e-28 Identity = 86/275 (31.27%), Postives = 147/275 (53.45%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL---VLFRLLGLLCLKYVTFE 816
+QL T++N+ I + +G+ + T+++ +V +GVIF +++F+ +G IP +R +FY+++GA + Y + ++Q+PLAV+ I+GSL+Y++ GF + K F F L+++L NL + L+A R D A L +S+ F+ FAGFIV +PDYL WA IS W+++ L IN++R + V +G+ E YG + Y G G E W+++ ++ L V+F L L L+Y+ +E
Sbjct: 445 RQLMVTYRNKPFIFGRLLMIFIMGLLFCTVFYSFDPTQVSVVMGVIFATVMFLSMGQSSQIPTYMAEREVFYKQRGANFFRTASYVLATSVSQIPLAVVEKIIFGSLVYWICGFVLEA-KLFIIFELILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSEIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVC-VYDGVDYCSE--YGLKMGEYYLGLFGMDTEK-EWIVYGVIYTLAMYVVFMFLSYLSLEYIRYE 713
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A329R8M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R8M4_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.390e-28 Identity = 86/279 (30.82%), Postives = 146/279 (52.33%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFR-GNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL------VLFRLLGLLCLKYVTFE 816
+Q T++N+ I + + +G+ Y T+++ +V +GVIF +++F+ +G IP +R +FY+++GA + Y + +Q+PLA++ T I+GSL+Y++ GF ++ K F F +++L NL + L+A R D A L +S+ F+ FAGFIV +PDYL WA IS W+++ L IN++R G + F +G+ E YG + Y G G E WI+ G + V+F L L L+++ +E
Sbjct: 164 RQSMVTYRNKPFIFGRLLMIIIMGLLYSTVFYDFDPKEVSVVMGVIFATVMFLSMGQSSQIPTYMAERDVFYKQRGANFFRTASYVLATSASQIPLAIVETLIFGSLVYWMCGFVSEA-KLFLIFEFILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSQIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVCFY--DGVDYCSE--YGLRMGEYYLGLFGMDTE----KEWIVYGIIYTAAMYVVFMFLSYLALEFIRYE 432
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Match: A0A2P4XIL0_9STRA (ABC Superfamily (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIL0_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.940e-28 Identity = 86/278 (30.94%), Postives = 145/278 (52.16%), Query Frame = 1
Query: 1 KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLVFVMIGNQQNIPRIFFDRLLFYREKGAGVYGAVEYWWSIGLAQLPLAVLNTCIYGSLLYFLAGFHNDTWKPFAYFMLVIILCNLIGLAFCQMLAAATRTQDTAVSLFPISLFFFIAFAGFIVRLPTLPDYLASWAPTISFARWAMEGLVINEFRGNEEAIFPVPEGIPITPEQIYGAFLEAYGFGKVGDGGEILGWVLWILLGNL------VLFRLLGLLCLKYVTFE 816
+QL T++N+ I + +G+ T+++ +V +GVIF +++F+ +G IP +R +FY+++GA + Y + +Q+PLAV+ T I+GSL+Y++ GF ++ K F F L+++L NL + L+A R D A L +S+ F+ FAGFIV +PDYL WA IS W+++ L IN++R + + +G+ E YG + Y G G E WI+ G + V+F L L L+++ +E
Sbjct: 438 RQLMVTYRNKPFIFGRLLMIFIMGLLICTVFYDFDPTQVSVVMGVIFTTIMFLSMGQSSQIPTYMAERDVFYKQRGANFFRTASYVLATSASQIPLAVVETLIFGSLVYWICGFVSEA-KLFIIFELILLLSNLAMGMWFFFLSAIGRNGDIATPLGMVSVLVFVIFAGFIVTKSQIPDYLI-WAHWISPMTWSLKALAINQYRSGPMDVC-LSDGVDYCTE--YGLTMGEYYLGLFGMDTE----KEWIVYGIIYTAAMYVVFMFLSYLALEFIRYE 706 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14145.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14145.2878.1 >prot_H-elongata_contig14145.2878.1 ID=prot_H-elongata_contig14145.2878.1|Name=mRNA_H-elongata_contig14145.2878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp KQLTATWQNRREILTAVGRHVFVGIFYGTLWWRLGLGKVYERIGVIFFSLback to top mRNA from alignment at H-elongata_contig14145:173..4285+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14145.2878.1 ID=mRNA_H-elongata_contig14145.2878.1|Name=mRNA_H-elongata_contig14145.2878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4113bp|location=Sequence derived from alignment at H-elongata_contig14145:173..4285+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14145:173..4285+ >mRNA_H-elongata_contig14145.2878.1 ID=mRNA_H-elongata_contig14145.2878.1|Name=mRNA_H-elongata_contig14145.2878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig14145:173..4285+ (Himanthalia elongata Himel1 dioecious)back to top |