mRNA_H-elongata_contig141277.2860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141277.2860.1
Unique NamemRNA_H-elongata_contig141277.2860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: D7FW61_ECTSI (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW61_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.540e-32
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   82 MVPPERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHACSKVLQQ 318
            MV PERALEH+SVE AW+LL+TLSSQ+VGKQ+ELQLMVGSRYHELIESADSIVSMKET AEVL LL+ FP ACS VLQQ
Sbjct:    1 MVSPERALEHMSVEKAWSLLDTLSSQVVGKQTELQLMVGSRYHELIESADSIVSMKETGAEVLGLLRKFPQACSNVLQQ 79          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A836CMC2_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.690e-12
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   85 VPPERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHACSKVLQ 315
            VP ERALE+ + E A  LL   +  +  KQ+EL+ MV SRYHELIESADS+V+M++ ++EVL LL   P  C  +L+
Sbjct:   33 VPIERALEYATAEDARALLVKAAEDVGVKQAELRGMVSSRYHELIESADSVVAMQQLTSEVLSLLDALPTDCRHLLK 109          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A7S3YF54_HETAK (Conserved oligomeric Golgi complex subunit 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF54_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 3.870e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   94 ERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
            E+ LE + +E    +L   +  +  KQ+ELQLMVGSRYHE+I+SADSIV MKE   +V+ LL  FP
Sbjct:   47 EKILESLPIEEVQRMLKDSNRNVQTKQTELQLMVGSRYHEIIDSADSIVEMKEEVQQVVELLIAFP 112          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A7R9YE28_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE28_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.800e-8
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   55 ELSNRQTDEMVPPERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHACSKVLQQ 318
            EL+ R   E    E  L +  ++   +L+  ++S +  KQ+ELQLMVGSRYHELIESAD IV+M++    V   LQD     S + ++
Sbjct:   18 ELAERAVQEA---EDMLVNQGIKAIEDLVGGMNSGMKTKQTELQLMVGSRYHELIESADHIVTMRDNVVHVARSLQDVGDEVSSICER 102          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A485L0I2_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0I2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.980e-6
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
            L+H+SV  A  LL+T   +   K+ E+Q M GSRY +LI++AD IVSM E S  +   L D P
Sbjct:    7 LQHLSVAEAQKLLDTAKGERERKEKEMQAMGGSRYQDLIDAADQIVSMHEASLRLDAALGDMP 69          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A1V9YBS7_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBS7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.050e-6
Identity = 29/63 (46.03%), Postives = 35/63 (55.56%), Query Frame = 1
Query:  103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
            L H S+     LL         K+ E+Q M GSRYH+LIESAD IVSM + S  + V L D P
Sbjct:   12 LRHRSIADVQKLLEVTRRSKEAKEKEMQAMGGSRYHDLIESADQIVSMHDASRRLEVALSDMP 74          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: W7TQZ7_9STRA (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQZ7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.640e-6
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  112 VSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVL-VLLQDFPHACSKVLQQ 318
            ++VE     + TLS  I  KQ+E+QL+VGSRYHELIESAD+++ M ++   +  +L  + P   + +LQ+
Sbjct:   12 LTVERVRREMKTLSEGIQAKQTEIQLIVGSRYHELIESADAVLDMCKSCNNLQHILTMEVPPVVADLLQE 81          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A397AA00_9STRA (Conserved oligomeric Golgi complex subunit 1 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AA00_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-5
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
            L  VSV  A  LL T  ++   K+ E+Q M GSRY +LI++AD IVSM E S  +   L+D P
Sbjct:    8 LREVSVVDAQKLLATSRAEKAAKEKEMQAMGGSRYQDLIDAADQIVSMHEASQRLDAALRDMP 70          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A6A5ARJ5_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ARJ5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.320e-5
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
            L  VSV  A  LL T  ++   K+ E+Q M GSRY +LI++AD IVSM E S  +   L+D P
Sbjct:    8 LREVSVVDAQKLLATSRAEKAAKEKEMQAMGGSRYQDLIDAADQIVSMHEASQRLDAALRDMP 70          
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A418EZF1_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EZF1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-5
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
            L  VSV  A  LL T  ++   K+ E+Q M GSRY +LI++AD IVSM E S  +   L+D P
Sbjct:    8 LREVSVVDAQKLLATSRAEKAAKEKEMQAMGGSRYQDLIDAADQIVSMHEASQRLDAALRDMP 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW61_ECTSI3.540e-3283.54Conserved oligomeric Golgi complex subunit 1 n=2 T... [more]
A0A836CMC2_9STRA8.690e-1250.65Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
A0A7S3YF54_HETAK3.870e-1151.52Conserved oligomeric Golgi complex subunit 1 (Frag... [more]
A0A7R9YE28_9STRA9.800e-840.91Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
A0A485L0I2_9STRA2.980e-646.03Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
A0A1V9YBS7_9STRA4.050e-646.03Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
W7TQZ7_9STRA5.640e-641.43Conserved oligomeric Golgi complex subunit 1 n=2 T... [more]
A0A397AA00_9STRA1.130e-546.03Conserved oligomeric Golgi complex subunit 1 (Frag... [more]
A0A6A5ARJ5_9STRA1.320e-546.03Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
A0A418EZF1_9STRA1.330e-546.03Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141277contigH-elongata_contig141277:283..834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue9.8e-28
Seed eggNOG ortholog2880.D7FW61
EggNOG free text desc.Vps51/Vps67
EggNOG OGs2E98P@1,2SFMQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.9482343-CDS-H-elongata_contig141277:282..4141622929839.9482343-CDS-H-elongata_contig141277:282..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141277 283..414 -
1691679178.7601469-CDS-H-elongata_contig141277:282..4141691679178.7601469-CDS-H-elongata_contig141277:282..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141277 283..414 -
1622929839.9666145-CDS-H-elongata_contig141277:648..8341622929839.9666145-CDS-H-elongata_contig141277:648..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141277 649..834 -
1691679178.7697418-CDS-H-elongata_contig141277:648..8341691679178.7697418-CDS-H-elongata_contig141277:648..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141277 649..834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141277.2860.1prot_H-elongata_contig141277.2860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141277 283..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141277.2860.1

>prot_H-elongata_contig141277.2860.1 ID=prot_H-elongata_contig141277.2860.1|Name=mRNA_H-elongata_contig141277.2860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
LILAPLGDPFPTLQEIMPELSNRQTDEMVPPERALEHVSVETAWNLLNTL
SSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHAC
SKVLQQ
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mRNA from alignment at H-elongata_contig141277:283..834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141277.2860.1 ID=mRNA_H-elongata_contig141277.2860.1|Name=mRNA_H-elongata_contig141277.2860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at H-elongata_contig141277:283..834- (Himanthalia elongata Himel1 dioecious)
TTAATTCTCGCTCCGTTGGGCGATCCGTTTCCAACGCTACAGGAAATAAT GCCAGAATTATCGAACCGCCAGACCGATGAAATGGTACCTCCAGAGCGCG CACTAGAGCATGTATCAGTGGAGACGGCGTGGAATCTTCTCAACACGCTA TCTTCGCAGATCGTGGGAAAGCAGTCTGAGCTTCAGGTAGGTCAAACACA CTCGAACCTGACGATAGTTGACTCACTTGTGATGTTATGAAGGTGTGGAT GTTCCGAGGGTTCGATTGAGTTAATTAGTTTTCTAGAAGGAAAAAAACTC TTGGCAGTTGGAACGAAGTCTGCAAGGCCGTCATAGGAACCCCGCCTATA ATTATATGACATTCCCGAGCCCCCCCCGTGTAATTTTTTGCATCGCGTCC GACATACCCATACCTACCAGTTGATGGTGGGCTCCCGGTACCACGAACTT ATCGAGTCTGCGGACAGTATTGTGTCGATGAAGGAGACTAGCGCGGAAGT ACTCGTTCTCCTGCAAGACTTTCCGCATGCATGTTCTAAGGTGCTCCAAC AG
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Coding sequence (CDS) from alignment at H-elongata_contig141277:283..834-

>mRNA_H-elongata_contig141277.2860.1 ID=mRNA_H-elongata_contig141277.2860.1|Name=mRNA_H-elongata_contig141277.2860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig141277:283..834- (Himanthalia elongata Himel1 dioecious)
TTAATTCTCGCTCCGTTGGGCGATCCGTTTCCAACGCTACAGGAAATAAT
GCCAGAATTATCGAACCGCCAGACCGATGAAATGGTACCTCCAGAGCGCG
CACTAGAGCATGTATCAGTGGAGACGGCGTGGAATCTTCTCAACACGCTA
TCTTCGCAGATCGTGGGAAAGCAGTCTGAGCTTCAGTTAATTCTCGCTCC
GTTGGGCGATCCGTTTCCAACGCTACAGGAAATAATGCCAGAATTATCGA
ACCGCCAGACCGATGAAATGGTACCTCCAGAGCGCGCACTAGAGCATGTA
TCAGTGGAGACGGCGTGGAATCTTCTCAACACGCTATCTTCGCAGATCGT
GGGAAAGCAGTCTGAGCTTCAGTTGATGGTGGGCTCCCGGTACCACGAAC
TTATCGAGTCTGCGGACAGTATTGTGTCGATGAAGGAGACTAGCGCGGAA
GTACTCGTTCTCCTGCAAGACTTTCCGCATGCATGTTCTAAGGTGCTCCA
ACAGTTGATGGTGGGCTCCCGGTACCACGAACTTATCGAGTCTGCGGACA
GTATTGTGTCGATGAAGGAGACTAGCGCGGAAGTACTCGTTCTCCTGCAA
GACTTTCCGCATGCATGTTCTAAGGTGCTCCAACAG
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