mRNA_H-elongata_contig141277.2860.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: D7FW61_ECTSI (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW61_ECTSI) HSP 1 Score: 128 bits (321), Expect = 3.540e-32 Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 82 MVPPERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHACSKVLQQ 318
MV PERALEH+SVE AW+LL+TLSSQ+VGKQ+ELQLMVGSRYHELIESADSIVSMKET AEVL LL+ FP ACS VLQQ
Sbjct: 1 MVSPERALEHMSVEKAWSLLDTLSSQVVGKQTELQLMVGSRYHELIESADSIVSMKETGAEVLGLLRKFPQACSNVLQQ 79
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A836CMC2_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 8.690e-12 Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 85 VPPERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHACSKVLQ 315
VP ERALE+ + E A LL + + KQ+EL+ MV SRYHELIESADS+V+M++ ++EVL LL P C +L+
Sbjct: 33 VPIERALEYATAEDARALLVKAAEDVGVKQAELRGMVSSRYHELIESADSVVAMQQLTSEVLSLLDALPTDCRHLLK 109
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A7S3YF54_HETAK (Conserved oligomeric Golgi complex subunit 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF54_HETAK) HSP 1 Score: 65.1 bits (157), Expect = 3.870e-11 Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 94 ERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
E+ LE + +E +L + + KQ+ELQLMVGSRYHE+I+SADSIV MKE +V+ LL FP
Sbjct: 47 EKILESLPIEEVQRMLKDSNRNVQTKQTELQLMVGSRYHEIIDSADSIVEMKEEVQQVVELLIAFP 112
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A7R9YE28_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE28_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 9.800e-8 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 55 ELSNRQTDEMVPPERALEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFPHACSKVLQQ 318
EL+ R E E L + ++ +L+ ++S + KQ+ELQLMVGSRYHELIESAD IV+M++ V LQD S + ++
Sbjct: 18 ELAERAVQEA---EDMLVNQGIKAIEDLVGGMNSGMKTKQTELQLMVGSRYHELIESADHIVTMRDNVVHVARSLQDVGDEVSSICER 102
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A485L0I2_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0I2_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 2.980e-6 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
L+H+SV A LL+T + K+ E+Q M GSRY +LI++AD IVSM E S + L D P
Sbjct: 7 LQHLSVAEAQKLLDTAKGERERKEKEMQAMGGSRYQDLIDAADQIVSMHEASLRLDAALGDMP 69
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A1V9YBS7_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBS7_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 4.050e-6 Identity = 29/63 (46.03%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
L H S+ LL K+ E+Q M GSRYH+LIESAD IVSM + S + V L D P
Sbjct: 12 LRHRSIADVQKLLEVTRRSKEAKEKEMQAMGGSRYHDLIESADQIVSMHDASRRLEVALSDMP 74
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: W7TQZ7_9STRA (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQZ7_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.640e-6 Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 112 VSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVL-VLLQDFPHACSKVLQQ 318
++VE + TLS I KQ+E+QL+VGSRYHELIESAD+++ M ++ + +L + P + +LQ+
Sbjct: 12 LTVERVRREMKTLSEGIQAKQTEIQLIVGSRYHELIESADAVLDMCKSCNNLQHILTMEVPPVVADLLQE 81
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A397AA00_9STRA (Conserved oligomeric Golgi complex subunit 1 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AA00_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.130e-5 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
L VSV A LL T ++ K+ E+Q M GSRY +LI++AD IVSM E S + L+D P
Sbjct: 8 LREVSVVDAQKLLATSRAEKAAKEKEMQAMGGSRYQDLIDAADQIVSMHEASQRLDAALRDMP 70
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A6A5ARJ5_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ARJ5_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.320e-5 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
L VSV A LL T ++ K+ E+Q M GSRY +LI++AD IVSM E S + L+D P
Sbjct: 8 LREVSVVDAQKLLATSRAEKAAKEKEMQAMGGSRYQDLIDAADQIVSMHEASQRLDAALRDMP 70
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Match: A0A418EZF1_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EZF1_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.330e-5 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 103 LEHVSVETAWNLLNTLSSQIVGKQSELQLMVGSRYHELIESADSIVSMKETSAEVLVLLQDFP 291
L VSV A LL T ++ K+ E+Q M GSRY +LI++AD IVSM E S + L+D P
Sbjct: 8 LREVSVVDAQKLLATSRAEKAAKEKEMQAMGGSRYQDLIDAADQIVSMHEASQRLDAALRDMP 70 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141277.2860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141277.2860.1 >prot_H-elongata_contig141277.2860.1 ID=prot_H-elongata_contig141277.2860.1|Name=mRNA_H-elongata_contig141277.2860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp LILAPLGDPFPTLQEIMPELSNRQTDEMVPPERALEHVSVETAWNLLNTLback to top mRNA from alignment at H-elongata_contig141277:283..834- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141277.2860.1 ID=mRNA_H-elongata_contig141277.2860.1|Name=mRNA_H-elongata_contig141277.2860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at H-elongata_contig141277:283..834- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141277:283..834- >mRNA_H-elongata_contig141277.2860.1 ID=mRNA_H-elongata_contig141277.2860.1|Name=mRNA_H-elongata_contig141277.2860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig141277:283..834- (Himanthalia elongata Himel1 dioecious)back to top |