mRNA_H-elongata_contig14097.2839.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: D8LBD3_ECTSI (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD3_ECTSI) HSP 1 Score: 350 bits (898), Expect = 6.430e-122 Identity = 168/180 (93.33%), Postives = 177/180 (98.33%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDIL 540
MRPLTDDETKVLFEKLANY+GKNIE LINRPDEKCCFRLHKDRVYYVSERLMRQATSVSR+TLLSLGTCFGKFTK+GKFRLHITALDY+SQ+AK+KVWVKPSAEMSFLYGNHVQKSGLGRITE+TP YGG VVYSMSDVPLGFGVAAQPTE+CKDLDPTAVVVLHQADVGEYLRVEDD+L
Sbjct: 1 MRPLTDDETKVLFEKLANYIGKNIEQLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 180
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A835ZB99_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB99_9STRA) HSP 1 Score: 303 bits (777), Expect = 1.860e-103 Identity = 146/178 (82.02%), Postives = 160/178 (89.89%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDD 534
MRPLTD+ET LFEKLANY+GK+IE LINRPDE CFRLHKDRVYYVSERLMRQ+T+VSR+ LLSLGTCFGKFTKT KFRL IT LDY+SQ+AK KVWVKP AEMSFLYGNHV KSGL RITE+TP Y GVVVYSM+D+P+GFGVAAQ TEYC+DLD AVVVLHQAD+GEYLRVEDD
Sbjct: 1 MRPLTDEETATLFEKLANYIGKDIEKLINRPDEAYCFRLHKDRVYYVSERLMRQSTNVSRDNLLSLGTCFGKFTKTKKFRLGITCLDYISQYAKHKVWVKPGAEMSFLYGNHVAKSGLARITEATPQYAGVVVYSMNDIPMGFGVAAQATEYCRDLDAAAVVVLHQADIGEYLRVEDD 178
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: B5Y3S4_PHATC (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3S4_PHATC) HSP 1 Score: 279 bits (713), Expect = 1.050e-93 Identity = 133/180 (73.89%), Postives = 157/180 (87.22%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLR-VEDDI 537
MRPLT++ETK LF KL+ Y+GKNIE LINR DE+ CFRL KDR YY+SE +M+ ATS+ RE LL +GTC GKFTKTGKFRLHITAL+Y+SQ+AK+KVWVKPSAEMSFLYGNHV K+GL R+TE+TP Y GVVVYSMSD+PLGFGVAAQ TE+C+ LDPT VVLHQAD+GEYLR +E+D+
Sbjct: 1 MRPLTEEETKSLFLKLSEYIGKNIERLINRSDERHCFRLIKDRCYYISESIMKSATSIGREHLLHVGTCMGKFTKTGKFRLHITALEYISQYAKYKVWVKPSAEMSFLYGNHVSKNGLARMTENTPQYSGVVVYSMSDIPLGFGVAAQSTEHCQQLDPTGNVVLHQADIGEYLRGLEEDM 180
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A7S2S5A9_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5A9_9STRA) HSP 1 Score: 275 bits (702), Expect = 4.970e-92 Identity = 131/180 (72.78%), Postives = 157/180 (87.22%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLR-VEDDI 537
MRPLT+DETK+LF+KLA Y+GK+IE +INR DE+ CFRL KDRVYYVSE M+ + S+SR+ +L GTC GKF+K+GKFRLH+TALDY+SQ+AK+KVWVKPSAEMSFLYGN++ KSGL RITESTP Y GVVVY+MSD+PLGFGV+AQ TE CKDL+P VVLHQAD+GEYLR VEDD+
Sbjct: 1 MRPLTEDETKLLFQKLAEYIGKSIEQMINRKDERHCFRLMKDRVYYVSESAMKYSASISRDNILHFGTCLGKFSKSGKFRLHVTALDYLSQYAKYKVWVKPSAEMSFLYGNNILKSGLARITESTPQYAGVVVYNMSDLPLGFGVSAQNTEACKDLEPMGNVVLHQADIGEYLRGVEDDM 180
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A6I9Z2T1_9SAUR (60S ribosome subunit biogenesis protein NIP7 homolog n=21 Tax=Sauria TaxID=32561 RepID=A0A6I9Z2T1_9SAUR) HSP 1 Score: 273 bits (698), Expect = 1.950e-91 Identity = 127/179 (70.95%), Postives = 157/179 (87.71%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 537
MRPLT+DET+VLFEKLA Y+G+NI+ L++RPD CFRLHKDRVYY+SERL++ AT++ R++L+SLGTCFGKFTKT KFRLHITALDY++ +AK+KVWVKP AE SFLYGNH+ KSGLGRITEST Y GVVVYSM+DVPLGFGVAA+ T+ C+ +DP A+VV HQAD+GEY+R E+ +
Sbjct: 1 MRPLTEDETRVLFEKLARYVGENIQLLVDRPDGTYCFRLHKDRVYYLSERLLKLATNIPRDSLVSLGTCFGKFTKTQKFRLHITALDYLAPYAKYKVWVKPGAEQSFLYGNHLLKSGLGRITESTAQYQGVVVYSMADVPLGFGVAAKTTQECRKVDPMAIVVFHQADIGEYIRHEETL 179
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A485KEQ5_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=26 Tax=Oomycota TaxID=4762 RepID=A0A485KEQ5_9STRA) HSP 1 Score: 273 bits (697), Expect = 2.770e-91 Identity = 129/179 (72.07%), Postives = 153/179 (85.47%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 537
MRPLTD+E K +FEK++ Y+G+N++HL+ RPDEK CFRLH D VYYVSE+LMRQAT++ E LLSLGT GK TKT KF L IT LDY++Q+AK+KVW+KP++EMSFLYGN+V KSGLGRITE TP Y GVVVYSM+DVPLGFGVAAQ TE CKDL PT VVLHQAD+GEYLRVED++
Sbjct: 1 MRPLTDEEMKTVFEKISKYIGRNVQHLVVRPDEKFCFRLHGDIVYYVSEKLMRQATNIGTEQLLSLGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDVPLGFGVAAQATELCKDLAPTDYVVLHQADIGEYLRVEDEM 179
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR) HSP 1 Score: 271 bits (693), Expect = 1.130e-90 Identity = 125/179 (69.83%), Postives = 155/179 (86.59%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 537
MRPLTD+ETK +FEKL+ Y+G+NI+ L++RPD CFRLH DRVYYVSER+++ AT+++R+ L+SLGTCFGKFTKT KFRLH+TALDY++ +AK+KVWVKP AE SFLYGNHV KSGLGRITE+T Y GVVVYSM+D+PLGFGVAA+ T+ C+ LDP A+VV HQADVGEY+R ED +
Sbjct: 1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: H9G7K1_ANOCA (60S ribosome subunit biogenesis protein NIP7 homolog n=5 Tax=Bifurcata TaxID=1329961 RepID=H9G7K1_ANOCA) HSP 1 Score: 271 bits (693), Expect = 1.130e-90 Identity = 127/179 (70.95%), Postives = 155/179 (86.59%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 537
MRPLT++ET+ LFEKL+ Y+G+NI+ LI RPD CFRLHKDRVYY+SER+++ AT+V R+ L+SLGTCFGKFTKT KFRLHITALDY++ +AK+KVWVKPSAE SFLYGNHV KSGLGRITEST Y GVVVYSM+DVPLGFGVAA+ T+ C+ +DP A+VV HQAD+GEY+R E+ +
Sbjct: 1 MRPLTEEETRALFEKLSKYIGENIQLLIERPDGAYCFRLHKDRVYYLSERILKLATNVPRQNLISLGTCFGKFTKTQKFRLHITALDYLAPYAKYKVWVKPSAEQSFLYGNHVLKSGLGRITESTSQYQGVVVYSMADVPLGFGVAAKSTQECRRMDPMAIVVFHQADIGEYIRHEETL 179
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A8C4T854_ERPCA (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4T854_ERPCA) HSP 1 Score: 270 bits (691), Expect = 2.270e-90 Identity = 125/179 (69.83%), Postives = 156/179 (87.15%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 537
MRPLTD+ETK LFEK++ Y+G+NI+ L++RPD CFRLHKDRVYY+SE+L++ +T++SR+ L+S+GTCFGKFTKT KFRLH+TALDY++ +AK+KVWVKP AE SFLYGNHV KSGLGRITE+T Y GVVVYSM+DVPLGFGVAA+ T+ C+ LDP A+VV HQAD+GEYLR ED +
Sbjct: 1 MRPLTDEETKALFEKVSKYIGENIKLLVDRPDGVYCFRLHKDRVYYLSEKLLKLSTNISRDKLISVGTCFGKFTKTMKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKLDPMAIVVFHQADIGEYLRSEDTL 179
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A6U3ZD71_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZD71_9STRA) HSP 1 Score: 270 bits (691), Expect = 2.350e-90 Identity = 127/180 (70.56%), Postives = 155/180 (86.11%), Query Frame = 1
Query: 1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLR-VEDDI 537
MRPLT++ETK LF KL YMG+N+E LINR DE+ CFRL KDRVYYVSE++M+ +T++SR+ LL +GTC GKFTKTGKFRLHITAL+Y+SQ+ K+KVW+KPSAEMSFLYGNH+ KSG+ RITESTP Y GV+VY+ DVPLGFGVAAQ T+ C++L+P VVLH+ADVGEYLR VEDD+
Sbjct: 1 MRPLTEEETKTLFTKLVEYMGRNVERLINREDERHCFRLVKDRVYYVSEKVMKASTTISRDDLLHVGTCLGKFTKTGKFRLHITALEYLSQYCKYKVWLKPSAEMSFLYGNHITKSGMARITESTPQYAGVIVYNAHDVPLGFGVAAQSTDKCRELEPMGNVVLHRADVGEYLRGVEDDM 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14097.2839.1 >prot_H-elongata_contig14097.2839.1 ID=prot_H-elongata_contig14097.2839.1|Name=mRNA_H-elongata_contig14097.2839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERback to top mRNA from alignment at H-elongata_contig14097:4423..6490- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14097.2839.1 ID=mRNA_H-elongata_contig14097.2839.1|Name=mRNA_H-elongata_contig14097.2839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2068bp|location=Sequence derived from alignment at H-elongata_contig14097:4423..6490- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14097:4423..6490- >mRNA_H-elongata_contig14097.2839.1 ID=mRNA_H-elongata_contig14097.2839.1|Name=mRNA_H-elongata_contig14097.2839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig14097:4423..6490- (Himanthalia elongata Himel1 dioecious)back to top |