mRNA_H-elongata_contig14090.2834.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.510e-22 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT+NVRT+AV+G G GRA VL+ + G +GLQE RR + F +G+ V+ G K G GVG+A++ ++ +A+ E++ RL+ + E+ G AV F AYAPT+ A +K FW LD V
Sbjct: 56 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVQEALCKASQYTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLV 190
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.340e-22 Identity = 58/141 (41.13%), Postives = 78/141 (55.32%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT NVRT+AV+G G GRA VL+ R V+G+QETRR+ + F AG+ V+C G G GVG+A++ S+ + ++ EFI L+ + L G AV F AYAPTE A +K FW LD V
Sbjct: 113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGT------ETGGVHGVGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLV 247
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 100 bits (249), Expect = 6.920e-22 Identity = 60/141 (42.55%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT NVRT+AV G G GRA VL+ R V+G+QETRR+ + F AG+ V+C G G GVG+A++ S+ + ++ EFI RL+ + L L G AV F A APTE AS+K FW LD V
Sbjct: 58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGT------ETGGVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLV 192
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 100 bits (248), Expect = 9.150e-22 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT+NVRT+AV+G G GRA VL+ + G +GLQE RR + F +G+ V+ G K G GVG+A+ ++ +++ E++ RL+ + E+ G AVTF AYAPT+ +KH FW LD V
Sbjct: 74 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 208
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 100 bits (248), Expect = 9.690e-22 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT+NVRT+AV+G G GRA VL+ + G +GLQE RR + F +G+ V+ G K G GVG+A+ ++ +++ E++ RL+ + E+ G AVTF AYAPT+ +KH FW LD V
Sbjct: 19 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 153
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 100 bits (248), Expect = 9.840e-22 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT+NVRT+AV+G G GRA VL+ + G +GLQE RR + F +G+ V+ G K G GVG+A+ ++ +++ E++ RL+ + E+ G AVTF AYAPT+ +KH FW LD V
Sbjct: 306 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 440
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 100 bits (248), Expect = 9.920e-22 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT+NVRT+AV+G G GRA VL+ + G +GLQE RR + F +G+ V+ G K G GVG+A+ ++ +++ E++ RL+ + E+ G AVTF AYAPT+ +KH FW LD V
Sbjct: 510 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 644
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.750e-20 Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
+ VAT+NVRT+AV+G G GRA VL+ + +GLQE RR + F +G+ V+ G K G GVG+A+ ++ +A+ E++ RL+ + E+ G AV F AYAPT+ A +K FW LD V
Sbjct: 44 VRVATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFTCGT------DKGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLV 178
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5KE09_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE09_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 8.630e-13 Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVA 351
+ VAT+NVRT+AV+G G GRA VL+ + G +GLQE RR + F +G+ V+ G K G GVG+A+ ++ +A+ E++ RL+ + E+ G AV A
Sbjct: 44 VRVATYNVRTLAVNGANGYGRADSVLHEATKQGISFVGLQEVRRPGRTEFTASGFRVFTCGT------DKGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNLVAA 155
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A0K0DIY0_ANGCA (Uncharacterized protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DIY0_ANGCA) HSP 1 Score: 56.2 bits (134), Expect = 2.930e-7 Identity = 40/139 (28.78%), Postives = 68/139 (48.92%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGE-CXXXXXXKKGQDGVGLAIRTSITRAASPPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDR 414
+T+ T++ RT+A + D+L +GYDV+GL ETRR RH +VY +GE +G GVG+ + T+++ E ++ + ++ L+ G + A+T FV YA T F+ L++
Sbjct: 1 MTICTYSARTLASESSIE-----DLLMQTRMIGYDVMGLAETRR-RHPLD-----AVYDTGEELFLGTCDDRGVGGVGILVNTTLSMNIDSFEQLTTPIGRLRLKRCGSIPALTIFVVYAATSNYEEEEVEVFYMDLEK 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14090.2834.1 >prot_H-elongata_contig14090.2834.1 ID=prot_H-elongata_contig14090.2834.1|Name=mRNA_H-elongata_contig14090.2834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSback to top mRNA from alignment at H-elongata_contig14090:45..470- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14090.2834.1 ID=mRNA_H-elongata_contig14090.2834.1|Name=mRNA_H-elongata_contig14090.2834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at H-elongata_contig14090:45..470- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14090:45..470- >mRNA_H-elongata_contig14090.2834.1 ID=mRNA_H-elongata_contig14090.2834.1|Name=mRNA_H-elongata_contig14090.2834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig14090:45..470- (Himanthalia elongata Himel1 dioecious)back to top |