mRNA_H-elongata_contig14090.2834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14090.2834.1
Unique NamemRNA_H-elongata_contig14090.2834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.510e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT+NVRT+AV+G  G GRA  VL+   + G   +GLQE RR   + F  +G+ V+  G        K G  GVG+A++ ++ +A+    E++  RL+ +  E+ G   AV F  AYAPT+   A +K  FW  LD  V
Sbjct:   56 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVQEALCKASQYTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLV 190          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.340e-22
Identity = 58/141 (41.13%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT NVRT+AV+G  G GRA  VL+   R    V+G+QETRR+  + F  AG+ V+C G          G  GVG+A++ S+ + ++   EFI   L+ +   L G   AV F  AYAPTE   A +K  FW  LD  V
Sbjct:  113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGT------ETGGVHGVGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLV 247          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.920e-22
Identity = 60/141 (42.55%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT NVRT+AV G  G GRA  VL+   R    V+G+QETRR+  + F  AG+ V+C G          G  GVG+A++ S+ + ++   EFI  RL+ + L L G   AV F  A APTE   AS+K  FW  LD  V
Sbjct:   58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGT------ETGGVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLV 192          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.150e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT+NVRT+AV+G  G GRA  VL+   + G   +GLQE RR   + F  +G+ V+  G        K G  GVG+A+  ++ +++    E++  RL+ +  E+ G   AVTF  AYAPT+     +KH FW  LD  V
Sbjct:   74 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 208          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.690e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT+NVRT+AV+G  G GRA  VL+   + G   +GLQE RR   + F  +G+ V+  G        K G  GVG+A+  ++ +++    E++  RL+ +  E+ G   AVTF  AYAPT+     +KH FW  LD  V
Sbjct:   19 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 153          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.840e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT+NVRT+AV+G  G GRA  VL+   + G   +GLQE RR   + F  +G+ V+  G        K G  GVG+A+  ++ +++    E++  RL+ +  E+ G   AVTF  AYAPT+     +KH FW  LD  V
Sbjct:  306 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 440          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.920e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT+NVRT+AV+G  G GRA  VL+   + G   +GLQE RR   + F  +G+ V+  G        K G  GVG+A+  ++ +++    E++  RL+ +  E+ G   AVTF  AYAPT+     +KH FW  LD  V
Sbjct:  510 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGT------DKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLV 644          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.750e-20
Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDRAV 420
            + VAT+NVRT+AV+G  G GRA  VL+   +     +GLQE RR   + F  +G+ V+  G        K G  GVG+A+  ++ +A+    E++  RL+ +  E+ G   AV F  AYAPT+   A +K  FW  LD  V
Sbjct:   44 VRVATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFTCGT------DKGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLV 178          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A6H5KE09_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE09_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.630e-13
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGECXXXXXXKKGQDGVGLAIRTSITRAAS-PPEFISNRLLKVALELRGRVKAVTFFVA 351
            + VAT+NVRT+AV+G  G GRA  VL+   + G   +GLQE RR   + F  +G+ V+  G        K G  GVG+A+  ++ +A+    E++  RL+ +  E+ G   AV    A
Sbjct:   44 VRVATYNVRTLAVNGANGYGRADSVLHEATKQGISFVGLQEVRRPGRTEFTASGFRVFTCGT------DKGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNLVAA 155          
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Match: A0A0K0DIY0_ANGCA (Uncharacterized protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DIY0_ANGCA)

HSP 1 Score: 56.2 bits (134), Expect = 2.930e-7
Identity = 40/139 (28.78%), Postives = 68/139 (48.92%), Query Frame = 1
Query:    1 ITVATHNVRTMAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCSGE-CXXXXXXKKGQDGVGLAIRTSITRAASPPEFISNRLLKVALELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLDR 414
            +T+ T++ RT+A +         D+L     +GYDV+GL ETRR RH        +VY +GE         +G  GVG+ + T+++      E ++  + ++ L+  G + A+T FV YA T          F+  L++
Sbjct:    1 MTICTYSARTLASESSIE-----DLLMQTRMIGYDVMGLAETRR-RHPLD-----AVYDTGEELFLGTCDDRGVGGVGILVNTTLSMNIDSFEQLTTPIGRLRLKRCGSIPALTIFVVYAATSNYEEEEVEVFYMDLEK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14090.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5LI16_9PHAE1.510e-2238.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDS6_9PHAE2.340e-2241.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBD7_9PHAE6.920e-2242.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQZ7_9PHAE9.150e-2238.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7U5_9PHAE9.690e-2238.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE9.840e-2238.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE9.920e-2238.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE3.750e-2037.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE09_9PHAE8.630e-1335.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A0K0DIY0_ANGCA2.930e-728.78Uncharacterized protein n=1 Tax=Angiostrongylus ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14090contigH-elongata_contig14090:45..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.2451036-CDS-H-elongata_contig14090:44..4401622929837.2451036-CDS-H-elongata_contig14090:44..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14090 45..440 -
1691679177.6479442-CDS-H-elongata_contig14090:44..4401691679177.6479442-CDS-H-elongata_contig14090:44..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14090 45..440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.262082-UTR-H-elongata_contig14090:440..4701622929837.262082-UTR-H-elongata_contig14090:440..470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14090 441..470 -
1691679177.6591535-UTR-H-elongata_contig14090:440..4701691679177.6591535-UTR-H-elongata_contig14090:440..470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14090 441..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14090.2834.1prot_H-elongata_contig14090.2834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14090 45..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14090.2834.1

>prot_H-elongata_contig14090.2834.1 ID=prot_H-elongata_contig14090.2834.1|Name=mRNA_H-elongata_contig14090.2834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MAVDGKYGVGRALDVLNVYDRLGYDVIGLQETRRSRHSAFNQAGYSVYCS
GECGGENGGKKGQDGVGLAIRTSITRAASPPEFISNRLLKVALELRGRVK
AVTFFVAYAPTETQNASNKHTFWTSLDRAVEE
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mRNA from alignment at H-elongata_contig14090:45..470-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14090.2834.1 ID=mRNA_H-elongata_contig14090.2834.1|Name=mRNA_H-elongata_contig14090.2834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at H-elongata_contig14090:45..470- (Himanthalia elongata Himel1 dioecious)
ATCACAGTTGCGACACACAACGTCCGAACGATGGCGGTAGATGGGAAGTA CGGAGTTGGACGGGCGCTAGATGTTTTGAATGTATACGACCGACTGGGGT ACGACGTTATCGGTCTGCAGGAGACCCGCCGCAGTAGACATTCAGCCTTC AATCAGGCTGGCTACTCGGTGTACTGCAGTGGTGAGTGCGGTGGTGAAAA TGGTGGGAAGAAAGGGCAAGATGGAGTAGGGCTAGCTATTAGAACTTCCA TCACACGTGCTGCAAGCCCACCGGAGTTTATCAGTAATCGCTTGCTAAAG GTTGCACTTGAACTACGGGGTCGAGTCAAGGCCGTTACGTTTTTTGTGGC GTATGCCCCCACTGAAACACAGAATGCTAGTAATAAACATACATTCTGGA CGAGCTTGGATAGAGCTGTGGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig14090:45..470-

>mRNA_H-elongata_contig14090.2834.1 ID=mRNA_H-elongata_contig14090.2834.1|Name=mRNA_H-elongata_contig14090.2834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig14090:45..470- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTAGATGGGAAGTACGGAGTTGGACGGGCGCTAGATGTTTTGAA
TGTATACGACCGACTGGGGTACGACGTTATCGGTCTGCAGGAGACCCGCC
GCAGTAGACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGT
GGTGAGTGCGGTGGTGAAAATGGTGGGAAGAAAGGGCAAGATGGAGTAGG
GCTAGCTATTAGAACTTCCATCACACGTGCTGCAAGCCCACCGGAGTTTA
TCAGTAATCGCTTGCTAAAGGTTGCACTTGAACTACGGGGTCGAGTCAAG
GCCGTTACGTTTTTTGTGGCGTATGCCCCCACTGAAACACAGAATGCTAG
TAATAAACATACATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAGATGG
CGGTAGATGGGAAGTACGGAGTTGGACGGGCGCTAGATGTTTTGAATGTA
TACGACCGACTGGGGTACGACGTTATCGGTCTGCAGGAGACCCGCCGCAG
TAGACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTACTGCAGTGGTG
AGTGCGGTGGTGAAAATGGTGGGAAGAAAGGGCAAGATGGAGTAGGGCTA
GCTATTAGAACTTCCATCACACGTGCTGCAAGCCCACCGGAGTTTATCAG
TAATCGCTTGCTAAAGGTTGCACTTGAACTACGGGGTCGAGTCAAGGCCG
TTACGTTTTTTGTGGCGTATGCCCCCACTGAAACACAGAATGCTAGTAAT
AAACATACATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAG
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