mRNA_H-elongata_contig140898.2832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140898.2832.1
Unique NamemRNA_H-elongata_contig140898.2832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig140898.2832.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.470e-19
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 PVAALQCFSCTDCSVGGALFGQKEQCGPMEIFCASVHRQKRVGRMGHSS-VDRGCASSLNVAC 186
            PV ALQCFSCTDCSVGGAL  QK+QC P E FCA+V R +    +  SS VDRGCASSLNVAC
Sbjct:   31 PVLALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVAC 93
[Close]
BLAST of mRNA_H-elongata_contig140898.2832.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.380e-17
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 PVAALQCFSCTDCSVGGALFGQKEQCGPMEIFCASVHRQKRVGRMGHSS-VDRGCASSLNVAC 186
            PV ALQ FSCTDCSVGGAL  QK+QC P E FCA+V R +    +  SS VDRGCASSL+VAC
Sbjct:   73 PVLALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVAC 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140898.2832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTZ0_ECTSI1.470e-1969.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS55_9PHAE5.380e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140898contigH-elongata_contig140898:92..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.1209786-CDS-H-elongata_contig140898:91..1721622929837.1209786-CDS-H-elongata_contig140898:91..172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140898 92..172 -
1691679177.6156182-CDS-H-elongata_contig140898:91..1721691679177.6156182-CDS-H-elongata_contig140898:91..172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140898 92..172 -
1622929837.1381698-CDS-H-elongata_contig140898:691..7961622929837.1381698-CDS-H-elongata_contig140898:691..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140898 692..796 -
1691679177.6247718-CDS-H-elongata_contig140898:691..7961691679177.6247718-CDS-H-elongata_contig140898:691..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140898 692..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140898.2832.1prot_H-elongata_contig140898.2832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140898 92..796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140898.2832.1

>prot_H-elongata_contig140898.2832.1 ID=prot_H-elongata_contig140898.2832.1|Name=mRNA_H-elongata_contig140898.2832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
PVAALQCFSCTDCSVGGALFGQKEQCGPMEIFCASVHRQKRVGRMGHSSV
DRGCASSLNVAC
back to top

mRNA from alignment at H-elongata_contig140898:92..796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140898.2832.1 ID=mRNA_H-elongata_contig140898.2832.1|Name=mRNA_H-elongata_contig140898.2832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig140898:92..796- (Himanthalia elongata Himel1 dioecious)
CCGGTAGCCGCGCTTCAGTGTTTTTCGTGCACGGATTGTTCCGTGGGAGG
TGCTCTCTTCGGGCAGAAGGAGCAGTGTGGACCGATGGAGATATTTTGCG
CGTCGGTGAGTCGTGCTACGAGTTAAGAGCACGCATCATATTACTACATA
CCGCAGGTTTTTAGGTTCGGCGCCCACACCGCTTGAACTCTTTATATCTA
GGCACTTACAAGGGGGCTTTGCTCTGGTGACTCTTGAGAATGAGCCTTGC
TGCTGGCAGTAGCTCGACGCTTGGATAAGACGCCTCCTGTCGCTGCACCG
TGGCCCTGTTCTGGGTGTAGTGCATGGTTGTTGCGCTCGAAGCGTTTGAT
TGAGGGACGCTTGTCATGCAGCTCCTCAACCCCCGCAGTTCTAATATCAT
TGGGCTGCCGAGGTCGGCCGGTGTTAGGGTTTTGATACAGGAGCGCCTTT
CACCTCTGTAGCGCGCCTCGGCGTCCGAATGCTCCGCTGTCCTCTAATTC
CACCCAGCAAACGAATCGCATCTACATTGTCAGCTACATCCACGTGACAT
GATATACGGGATGGTGTTTCCTGTACGAATCGCTGTGCACGTAACAATAT
CCCTCTTTGGATCTCAACAACCAGGTGCATCGACAAAAGCGCGTCGGGAG
GATGGGCCATTCATCGGTGGATCGCGGATGCGCGTCGTCGCTAAACGTCG
CTTGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig140898:92..796-

>mRNA_H-elongata_contig140898.2832.1 ID=mRNA_H-elongata_contig140898.2832.1|Name=mRNA_H-elongata_contig140898.2832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig140898:92..796- (Himanthalia elongata Himel1 dioecious)
CCGGTAGCCGCGCTTCAGTGTTTTTCGTGCACGGATTGTTCCGTGGGAGG
TGCTCTCTTCGGGCAGAAGGAGCAGTGTGGACCGATGGAGATATTTTGCG
CGTCGCCGGTAGCCGCGCTTCAGTGTTTTTCGTGCACGGATTGTTCCGTG
GGAGGTGCTCTCTTCGGGCAGAAGGAGCAGTGTGGACCGATGGAGATATT
TTGCGCGTCGGTGCATCGACAAAAGCGCGTCGGGAGGATGGGCCATTCAT
CGGTGGATCGCGGATGCGCGTCGTCGCTAAACGTCGCTTGCGTGCATCGA
CAAAAGCGCGTCGGGAGGATGGGCCATTCATCGGTGGATCGCGGATGCGC
GTCGTCGCTAAACGTCGCTTGC
back to top