mRNA_H-elongata_contig140870.2829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140870.2829.1
Unique NamemRNA_H-elongata_contig140870.2829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.800e-41
Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 1 
Query:    4 YLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIK 435
            +L+ TK  A+++LQLF  S V+P   R+   R DKG E T  EFR+YCL+ G   E+A+TNTPQQ+G +ER  RTL A+VR IL DSG P  +WG+L+ TAAYL NR PH AL   T +K L+G++A+L HLR IG+R  VH++
Sbjct:   29 FLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVE 172
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5KKW6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW6_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 7.370e-39
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  + +  Q+L  +    V   G RI   R DKGGE TGEE R YC E+ I  EFAATNTPQ+IGVSER  +TL A+ R +L D  FP  MWG+L+MTAAYL NRTPH AL   T +  ++    DLS LR IG+R  VH +  +K
Sbjct:  110 VYLLRDRTETTQALHAY-NMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKPEFAATNTPQEIGVSERDSKTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERFKK 257
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.710e-38
Identity = 80/151 (52.98%), Postives = 102/151 (67.55%), Query Frame = 1 
Query:   19 KDQALQ--SLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKD-SRKLEAAA 462
            KD+A    SL LF   TV+P G RI   R D+G E+T  EFRQYC + GI  EFAA NTPQQIG ++R RRT+  +V  +LADS  P+ +WG+L+ TA YL +R PH AL+  T +K L+G++A L HLRVIGSR  VH +  +RKLE  A
Sbjct:  730 KDKACSEGSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIELEFAAPNTPQQIGPNDRARRTILNVVHCLLADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRA 880
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 7.020e-38
Identity = 76/149 (51.01%), Postives = 92/149 (61.74%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  K    ++   +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:    6 VYLLRKKSDTTEAAHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 154
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 8.570e-38
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  + +  Q+L  +    V   G RI   R DKGGE TGEE R YC E+ I  EFAATNTPQ+IGVSER  +TL A+ R +L D  FP  MWG+L+MTAAYL NRTPH AL   T +  ++    DLS LR IG+R  VH +  +K
Sbjct:  258 VYLLRDRTETTQALHAY-NMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKK 405
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.490e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.730e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.040e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.050e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.630e-37
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 1 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 447
            VYLL  + +  Q+L  +    V   G RI   R DKGGE TGEE R YC E+ I  EFAATNTPQ+IGVSER  +TL A+ R +L D  FP  MWG+L+MTAAYL NRTPH AL   T +  ++    DLS LR IG+R  VH +  +K
Sbjct:  449 VYLLRDRTETTQALHAY-NMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKK 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE8.800e-4152.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKW6_9PHAE7.370e-3951.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW9_9PHAE1.710e-3852.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5H2_9PHAE7.020e-3851.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4X4_9PHAE8.570e-3851.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE1.490e-3751.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.730e-3751.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.040e-3751.01Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.050e-3751.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVS2_9PHAE2.630e-3751.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140870contigH-elongata_contig140870:11..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.0
Seed ortholog evalue2e-21
Seed eggNOG ortholog4081.Solyc09g056150.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.7441807-CDS-H-elongata_contig140870:10..4751622929836.7441807-CDS-H-elongata_contig140870:10..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140870 11..475 +
1691679177.4257228-CDS-H-elongata_contig140870:10..4751691679177.4257228-CDS-H-elongata_contig140870:10..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140870 11..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140870.2829.1prot_H-elongata_contig140870.2829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140870 11..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140870.2829.1

>prot_H-elongata_contig140870.2829.1 ID=prot_H-elongata_contig140870.2829.1|Name=mRNA_H-elongata_contig140870.2829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCL
ETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLM
TAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRKL
EAAA*
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mRNA from alignment at H-elongata_contig140870:11..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140870.2829.1 ID=mRNA_H-elongata_contig140870.2829.1|Name=mRNA_H-elongata_contig140870.2829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at H-elongata_contig140870:11..475+ (Himanthalia elongata Himel1 dioecious)
GTCTACTTGTTGACTACTAAGGACCAAGCTCTTCAGTCACTTCAACTGTT
TGTCGGCTCGACAGTCATTCCCTTCGGCGGCCGCATCGTTCGTTGGCGCG
CCGACAAGGGTGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTGCTTG
GAGACCGGTATTATCCAAGAATTCGCCGCAACCAACACGCCACAGCAAAT
CGGTGTGTCCGAACGAGTAAGGAGGACTTTGTGCGCGATAGTTCGAGGTA
TACTCGCAGACAGCGGCTTCCCATCGTCCATGTGGGGGAAGCTGCTTATG
ACGGCTGCGTACCTCAAGAACAGGACTCCGCACGAAGCGCTCAAGATGGA
GACGTCGTTCAAGATGCTTCACGGCGAGGAAGCCGACCTTTCGCACCTTC
GCGTTATCGGATCCAGAACCTCCGTGCACATCAAGGACTCCAGAAAGCTT
GAAGCCGCGGCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig140870:11..475+

>mRNA_H-elongata_contig140870.2829.1 ID=mRNA_H-elongata_contig140870.2829.1|Name=mRNA_H-elongata_contig140870.2829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig140870:11..475+ (Himanthalia elongata Himel1 dioecious)
GTCTACTTGTTGACTACTAAGGACCAAGCTCTTCAGTCACTTCAACTGTT
TGTCGGCTCGACAGTCATTCCCTTCGGCGGCCGCATCGTTCGTTGGCGCG
CCGACAAGGGTGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTGCTTG
GAGACCGGTATTATCCAAGAATTCGCCGCAACCAACACGCCACAGCAAAT
CGGTGTGTCCGAACGAGTAAGGAGGACTTTGTGCGCGATAGTTCGAGGTA
TACTCGCAGACAGCGGCTTCCCATCGTCCATGTGGGGGAAGCTGCTTATG
ACGGCTGCGTACCTCAAGAACAGGACTCCGCACGAAGCGCTCAAGATGGA
GACGTCGTTCAAGATGCTTCACGGCGAGGAAGCCGACCTTTCGCACCTTC
GCGTTATCGGATCCAGAACCTCCGTGCACATCAAGGACTCCAGAAAGCTT
GAAGCCGCGGCTTAGGTCTACTTGTTGACTACTAAGGACCAAGCTCTTCA
GTCACTTCAACTGTTTGTCGGCTCGACAGTCATTCCCTTCGGCGGCCGCA
TCGTTCGTTGGCGCGCCGACAAGGGTGGCGAGTACACCGGGGAGGAGTTC
CGGCAGTACTGCTTGGAGACCGGTATTATCCAAGAATTCGCCGCAACCAA
CACGCCACAGCAAATCGGTGTGTCCGAACGAGTAAGGAGGACTTTGTGCG
CGATAGTTCGAGGTATACTCGCAGACAGCGGCTTCCCATCGTCCATGTGG
GGGAAGCTGCTTATGACGGCTGCGTACCTCAAGAACAGGACTCCGCACGA
AGCGCTCAAGATGGAGACGTCGTTCAAGATGCTTCACGGCGAGGAAGCCG
ACCTTTCGCACCTTCGCGTTATCGGATCCAGAACCTCCGTGCACATCAAG
GACTCCAGAAAGCTTGAAGCCGCGGCTTAG
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