prot_H-elongata_contig140870.2829.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig140870.2829.1
Unique Nameprot_H-elongata_contig140870.2829.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length155
Homology
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.800e-41
Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 0 
Query:    2 YLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIK 145
            +L+ TK  A+++LQLF  S V+P   R+   R DKG E T  EFR+YCL+ G   E+A+TNTPQQ+G +ER  RTL A+VR IL DSG P  +WG+L+ TAAYL NR PH AL   T +K L+G++A+L HLR IG+R  VH++
Sbjct:   29 FLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVE 172
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5KKW6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW6_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 7.370e-39
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  + +  Q+L  +    V   G RI   R DKGGE TGEE R YC E+ I  EFAATNTPQ+IGVSER  +TL A+ R +L D  FP  MWG+L+MTAAYL NRTPH AL   T +  ++    DLS LR IG+R  VH +  +K
Sbjct:  110 VYLLRDRTETTQALHAY-NMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKPEFAATNTPQEIGVSERDSKTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERFKK 257
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.710e-38
Identity = 80/151 (52.98%), Postives = 102/151 (67.55%), Query Frame = 0 
Query:    7 KDQALQ--SLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKD-SRKLEAAA 154
            KD+A    SL LF   TV+P G RI   R D+G E+T  EFRQYC + GI  EFAA NTPQQIG ++R RRT+  +V  +LADS  P+ +WG+L+ TA YL +R PH AL+  T +K L+G++A L HLRVIGSR  VH +  +RKLE  A
Sbjct:  730 KDKACSEGSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIELEFAAPNTPQQIGPNDRARRTILNVVHCLLADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRA 880
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 7.020e-38
Identity = 76/149 (51.01%), Postives = 92/149 (61.74%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  K    ++   +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:    6 VYLLRKKSDTTEAAHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 154
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 8.570e-38
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  + +  Q+L  +    V   G RI   R DKGGE TGEE R YC E+ I  EFAATNTPQ+IGVSER  +TL A+ R +L D  FP  MWG+L+MTAAYL NRTPH AL   T +  ++    DLS LR IG+R  VH +  +K
Sbjct:  258 VYLLRDRTETTQALHAY-NMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKK 405
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.490e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.730e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.040e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.050e-37
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I  E+AATNTPQQIGVSER  +TL  + R +L D  FP SMWG+L++TAAYL NR+PH AL   T +  LH +  DLS LRVIG+R  VH +  RK
Sbjct:  140 VYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 288
[Close]
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.630e-37
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 0 
Query:    1 VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCLETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLMTAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRK 149
            VYLL  + +  Q+L  +    V   G RI   R DKGGE TGEE R YC E+ I  EFAATNTPQ+IGVSER  +TL A+ R +L D  FP  MWG+L+MTAAYL NRTPH AL   T +  ++    DLS LR IG+R  VH +  +K
Sbjct:  449 VYLLRDRTETTQALHAY-NMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKK 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140870.2829.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE8.800e-4152.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKW6_9PHAE7.370e-3951.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW9_9PHAE1.710e-3852.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5H2_9PHAE7.020e-3851.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4X4_9PHAE8.570e-3851.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE1.490e-3751.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.730e-3751.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.040e-3751.01Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.050e-3751.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVS2_9PHAE2.630e-3751.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 5..77
e-value: 1.1E-8
score: 35.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..127
score: 13.303
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..152
e-value: 1.1E-17
score: 65.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 31..146
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 31..146
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140870contigH-elongata_contig140870:11..475 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140870.2829.1mRNA_H-elongata_contig140870.2829.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig140870 11..475 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig140870.2829.1 ID=prot_H-elongata_contig140870.2829.1|Name=mRNA_H-elongata_contig140870.2829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
VYLLTTKDQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQYCL
ETGIIQEFAATNTPQQIGVSERVRRTLCAIVRGILADSGFPSSMWGKLLM
TAAYLKNRTPHEALKMETSFKMLHGEEADLSHLRVIGSRTSVHIKDSRKL
EAAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf