mRNA_H-elongata_contig1406.2815.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: D7FT94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT94_ECTSI) HSP 1 Score: 202 bits (514), Expect = 1.670e-61 Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 1
Query: 49 RVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
+VKI+ACSEPSRG +GTTD+IVYPEGLIYSL D S+LE F+ QLING+V+++L+P PV Y+KMVLVCTHMSRDKRCGR GPQV+ EM+K L+ RGV D +A+R SSHFGGHKYAGVLIIYPQGDW
Sbjct: 161 QVKISACSEPSRGREGTTDVIVYPEGLIYSLSRDDTSSLEQFLNVQLINGEVATQLKPVPVSYKKMVLVCTHMSRDKRCGRAGPQVIGEMEKALQERGVGPDEIAVRGSSHFGGHKYAGVLIIYPQGDW 289
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: UPI0001FE36D4 (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE36D4) HSP 1 Score: 129 bits (324), Expect = 3.100e-33 Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = 1
Query: 58 ITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
+TACSE ++G GT D+IVYPEG+ Y + + FV+ Q++ G V+ + +PV + +VLVCTH +RD RCGR GPQV++++ + + R + DT+A+R SSH GGHKYAGV+++YP GDW
Sbjct: 213 VTACSELTKGDFGT-DVIVYPEGIRY--LGVTIEQIPEFVEYQVVRGVVAQNIPHEPVDKRYLVLVCTHGTRDARCGRSGPQVMDKLAELMAERSIGDDTIAVRGSSHLGGHKYAGVVVVYPPGDW 335
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A2P6NW20_9EUKA (Altered inheritance of mitochondria protein 32 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NW20_9EUKA) HSP 1 Score: 116 bits (291), Expect = 2.050e-29 Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 58 ITACSEPSRGPDGTTDIIVYPEGLIYS-----------LFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
T CSEP+R G DIIVYPEG +YS F + L FV ++ + + + V ++ +VLVCTH +RDKRCGR+GPQV++++ L R +S+D VA+ SSH GGHKYA V+++YP+GDW
Sbjct: 78 FTLCSEPNRSDKGV-DIIVYPEG-VYSNEEVLSEKGVRYFQVTEADLPSFV-DHILKDEAPPNIHKEKVTWEHVVLVCTHGTRDKRCGRIGPQVVDQLTGMLSERNISSDKVAILGSSHLGGHKYAAVVVVYPEGDW 211
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: L8H8Q7_ACACA (Ferredoxin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8Q7_ACACA) HSP 1 Score: 115 bits (287), Expect = 1.400e-28 Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 49 RVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
+ K+T E S+G +GT D+IV+PE + Y + + V+ L+NG VS ++ +P ++VLVC H +RD RCG GP ++ D+ L ARG+ D V +R SSH GGHKYAGV+++YP+GDW
Sbjct: 102 KFKLTNSDERSKGSEGT-DLIVFPERIRYLGVTAE--TMPFIVEDHLVNGHVSERVKHEPFE-SELVLVCCHNNRDTRCGAEGPIIVSAFDRLLAARGLGEDKVMVRSSSHLGGHKYAGVVVVYPRGDW 226
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A0M8KAU1_9CHLR (Uncharacterized protein n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAU1_9CHLR) HSP 1 Score: 98.2 bits (243), Expect = 1.730e-22 Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 49 RVKITACSEPSRGPDGTTDIIVYPEGLIY-SLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
++++TA EPS G DG D++V+P+G+ Y L D+ L ++ L+ G+ S L +PV VLVC H RD+RCGR GP +++ + L G+S D + SSH GGHK+AG +I+YP GDW
Sbjct: 60 KIRVTASDEPSEG-DGY-DVLVFPDGVRYLGLREEDIPTL---IEDHLLGGRPSPRLAHRPVEVG-YVLVCVHAERDERCGRAGPPLVDRFWEVLDREGLS-DRYRVVASSHLGGHKFAGNIIVYPSGDW 182
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A835YVK0_9STRA (Sucrase/ferredoxin-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVK0_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.120e-22 Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 1
Query: 46 NRVKITACSEPSR--GPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPK-PVPYQKMVLVCTHMSRDKRCGRVGPQV--------LEEMDKELKARGVSADT-VALRRSSHFGGHKYAGVLIIYPQGDW 435
+RV+ITAC+ P+ P GT D+++YPE L+ + + LE ++ ++ P PVPY+ +VLVCTH SR +RCGR GPQV + E +E KA+ +DT +++ SH GGHK+AGV I++PQG W
Sbjct: 40 SRVRITACALPTGPLAPAGTVDMMLYPEALLCTRSTEQRATLEQSREAAAAAAALARVGIPTMPVPYEHLVLVCTHNSRSRRCGRTGPQVQPLQINMKVIEAMQERKAQLRMSDTQLSIVACSHIGGHKHAGVCIVWPQGHW 181
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A7S1TUK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUK0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.460e-20 Identity = 58/168 (34.52%), Postives = 80/168 (47.62%), Query Frame = 1
Query: 52 VKITACSEPSRGPDGTTDIIV---YPEGL---IYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADT----------------------------------VALRRSSHFGGHKYAGVLIIYPQGDW 435
VK+TA +E + G G ++ YP G+ + G E ++S+ G + QP+P+P+ K++LVCTH SRDKRCGR GPQ+L M + L RG+ A V LR SH GGHK+AGV I+YP+ DW
Sbjct: 152 VKVTAVAEDATG--GRNVLLYTNRYPRGVRIRVEQTAAGAQGLCEALLRSR-DEGDALAPFQPEPLPWDKLILVCTHASRDKRCGRAGPQMLTHMSEALVKRGLGAGLPPDHPRHTHDPRGFLGAVASEISHRLAYGAPRPRVVLRGCSHIGGHKHAGVCIVYPEADW 316
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A7W1C6G9_9BACT (Sucrase ferredoxin n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7W1C6G9_9BACT) HSP 1 Score: 89.0 bits (219), Expect = 4.170e-19 Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 55 KITACSEPSRGPDGTTDIIVYPEGLIY-----SLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
K+TA E S GP D++V+PE + Y + +PG L+ +I G+VS+ P+ V VC H +RD+RCGR GP V+ + + A G++ TV R +SH GGHKYAG ++IYP G W
Sbjct: 60 KLTASDESSMGPGA--DLLVFPESVRYHGVDEATWPGVLA-------DHVIGGEVSTAAPSTPLTGVH-VFVCVHAARDERCGRCGPPVIAALREACAAEGMADATV--RATSHVGGHKYAGNVLIYPSGAW 179
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: UPI00053AFA7F (uncharacterized protein LOC104732769 n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AFA7F) HSP 1 Score: 86.3 bits (212), Expect = 3.540e-17 Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 49 RVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYP-------QGDW 435
+ K+ C G DG D++V+P+ + Y + +E FV+ L+NG+ S + + V VCTH SRDKRCG GP +LE KE+ +RG+S D + L+R SH G HKYAG LII+ G+W
Sbjct: 112 QTKLNVCE--GGGSDG--DVLVFPDMIRYKGVKD--TDVEGFVEDVLVNGKAWSSGTQEEIS-GTFVFVCTHTSRDKRCGVCGPVILERFQKEIGSRGLS-DQITLKRCSHVGQHKYAGNLIIFSPDSAGKISGNW 239
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A2E0UXF4_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0UXF4_9CHLR) HSP 1 Score: 83.6 bits (205), Expect = 8.570e-17 Identity = 49/131 (37.40%), Postives = 78/131 (59.54%), Query Frame = 1
Query: 46 NRVKITACSEPSRGPDGTTDIIVYPEGL-IYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
N +K+TAC P+ G DG T I+V+P+ + I L +L L +++ + G + E PK ++LVC H +RD RCG P V+++M ++ ++ + V + RSSH GGHK+AGV ++YP G+W
Sbjct: 62 NAIKLTACDLPAVG-DGET-ILVFPDRVRISGLTEDNLENLINYLRDGIERG-LKIESFPK-----FLILVCGHQNRDNRCGLAAPGVMQKMMNVIEQFDLT-EQVLVSRSSHLGGHKFAGVAVVYPSGNW 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1406.2815.1 >prot_H-elongata_contig1406.2815.1 ID=prot_H-elongata_contig1406.2815.1|Name=mRNA_H-elongata_contig1406.2815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp KVAKEAEANDRAAPENRVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGback to top mRNA from alignment at H-elongata_contig1406:13481..14530+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1406.2815.1 ID=mRNA_H-elongata_contig1406.2815.1|Name=mRNA_H-elongata_contig1406.2815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig1406:13481..14530+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1406:13481..14530+ >mRNA_H-elongata_contig1406.2815.1 ID=mRNA_H-elongata_contig1406.2815.1|Name=mRNA_H-elongata_contig1406.2815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig1406:13481..14530+ (Himanthalia elongata Himel1 dioecious)back to top |