mRNA_H-elongata_contig1406.2815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1406.2815.1
Unique NamemRNA_H-elongata_contig1406.2815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: D7FT94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT94_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.670e-61
Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 1
Query:   49 RVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
            +VKI+ACSEPSRG +GTTD+IVYPEGLIYSL   D S+LE F+  QLING+V+++L+P PV Y+KMVLVCTHMSRDKRCGR GPQV+ EM+K L+ RGV  D +A+R SSHFGGHKYAGVLIIYPQGDW
Sbjct:  161 QVKISACSEPSRGREGTTDVIVYPEGLIYSLSRDDTSSLEQFLNVQLINGEVATQLKPVPVSYKKMVLVCTHMSRDKRCGRAGPQVIGEMEKALQERGVGPDEIAVRGSSHFGGHKYAGVLIIYPQGDW 289          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: UPI0001FE36D4 (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE36D4)

HSP 1 Score: 129 bits (324), Expect = 3.100e-33
Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   58 ITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
            +TACSE ++G  GT D+IVYPEG+ Y      +  +  FV+ Q++ G V+  +  +PV  + +VLVCTH +RD RCGR GPQV++++ + +  R +  DT+A+R SSH GGHKYAGV+++YP GDW
Sbjct:  213 VTACSELTKGDFGT-DVIVYPEGIRY--LGVTIEQIPEFVEYQVVRGVVAQNIPHEPVDKRYLVLVCTHGTRDARCGRSGPQVMDKLAELMAERSIGDDTIAVRGSSHLGGHKYAGVVVVYPPGDW 335          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A2P6NW20_9EUKA (Altered inheritance of mitochondria protein 32 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NW20_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 2.050e-29
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   58 ITACSEPSRGPDGTTDIIVYPEGLIYS-----------LFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
             T CSEP+R   G  DIIVYPEG +YS            F    + L  FV   ++  +    +  + V ++ +VLVCTH +RDKRCGR+GPQV++++   L  R +S+D VA+  SSH GGHKYA V+++YP+GDW
Sbjct:   78 FTLCSEPNRSDKGV-DIIVYPEG-VYSNEEVLSEKGVRYFQVTEADLPSFV-DHILKDEAPPNIHKEKVTWEHVVLVCTHGTRDKRCGRIGPQVVDQLTGMLSERNISSDKVAILGSSHLGGHKYAAVVVVYPEGDW 211          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: L8H8Q7_ACACA (Ferredoxin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8Q7_ACACA)

HSP 1 Score: 115 bits (287), Expect = 1.400e-28
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   49 RVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
            + K+T   E S+G +GT D+IV+PE + Y     +   +   V+  L+NG VS  ++ +P    ++VLVC H +RD RCG  GP ++   D+ L ARG+  D V +R SSH GGHKYAGV+++YP+GDW
Sbjct:  102 KFKLTNSDERSKGSEGT-DLIVFPERIRYLGVTAE--TMPFIVEDHLVNGHVSERVKHEPFE-SELVLVCCHNNRDTRCGAEGPIIVSAFDRLLAARGLGEDKVMVRSSSHLGGHKYAGVVVVYPRGDW 226          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A0M8KAU1_9CHLR (Uncharacterized protein n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAU1_9CHLR)

HSP 1 Score: 98.2 bits (243), Expect = 1.730e-22
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   49 RVKITACSEPSRGPDGTTDIIVYPEGLIY-SLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
            ++++TA  EPS G DG  D++V+P+G+ Y  L   D+  L   ++  L+ G+ S  L  +PV     VLVC H  RD+RCGR GP +++   + L   G+S D   +  SSH GGHK+AG +I+YP GDW
Sbjct:   60 KIRVTASDEPSEG-DGY-DVLVFPDGVRYLGLREEDIPTL---IEDHLLGGRPSPRLAHRPVEVG-YVLVCVHAERDERCGRAGPPLVDRFWEVLDREGLS-DRYRVVASSHLGGHKFAGNIIVYPSGDW 182          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A835YVK0_9STRA (Sucrase/ferredoxin-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVK0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.120e-22
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 1
Query:   46 NRVKITACSEPSR--GPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPK-PVPYQKMVLVCTHMSRDKRCGRVGPQV--------LEEMDKELKARGVSADT-VALRRSSHFGGHKYAGVLIIYPQGDW 435
            +RV+ITAC+ P+    P GT D+++YPE L+ +      + LE   ++      ++    P  PVPY+ +VLVCTH SR +RCGR GPQV        + E  +E KA+   +DT +++   SH GGHK+AGV I++PQG W
Sbjct:   40 SRVRITACALPTGPLAPAGTVDMMLYPEALLCTRSTEQRATLEQSREAAAAAAALARVGIPTMPVPYEHLVLVCTHNSRSRRCGRTGPQVQPLQINMKVIEAMQERKAQLRMSDTQLSIVACSHIGGHKHAGVCIVWPQGHW 181          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A7S1TUK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUK0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-20
Identity = 58/168 (34.52%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   52 VKITACSEPSRGPDGTTDIIV---YPEGL---IYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADT----------------------------------VALRRSSHFGGHKYAGVLIIYPQGDW 435
            VK+TA +E + G  G   ++    YP G+   +     G     E  ++S+   G   +  QP+P+P+ K++LVCTH SRDKRCGR GPQ+L  M + L  RG+ A                                    V LR  SH GGHK+AGV I+YP+ DW
Sbjct:  152 VKVTAVAEDATG--GRNVLLYTNRYPRGVRIRVEQTAAGAQGLCEALLRSR-DEGDALAPFQPEPLPWDKLILVCTHASRDKRCGRAGPQMLTHMSEALVKRGLGAGLPPDHPRHTHDPRGFLGAVASEISHRLAYGAPRPRVVLRGCSHIGGHKHAGVCIVYPEADW 316          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A7W1C6G9_9BACT (Sucrase ferredoxin n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7W1C6G9_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 4.170e-19
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   55 KITACSEPSRGPDGTTDIIVYPEGLIY-----SLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
            K+TA  E S GP    D++V+PE + Y     + +PG L+         +I G+VS+     P+     V VC H +RD+RCGR GP V+  + +   A G++  TV  R +SH GGHKYAG ++IYP G W
Sbjct:   60 KLTASDESSMGPGA--DLLVFPESVRYHGVDEATWPGVLA-------DHVIGGEVSTAAPSTPLTGVH-VFVCVHAARDERCGRCGPPVIAALREACAAEGMADATV--RATSHVGGHKYAGNVLIYPSGAW 179          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: UPI00053AFA7F (uncharacterized protein LOC104732769 n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AFA7F)

HSP 1 Score: 86.3 bits (212), Expect = 3.540e-17
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   49 RVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYP-------QGDW 435
            + K+  C     G DG  D++V+P+ + Y       + +E FV+  L+NG+  S    + +     V VCTH SRDKRCG  GP +LE   KE+ +RG+S D + L+R SH G HKYAG LII+         G+W
Sbjct:  112 QTKLNVCE--GGGSDG--DVLVFPDMIRYKGVKD--TDVEGFVEDVLVNGKAWSSGTQEEIS-GTFVFVCTHTSRDKRCGVCGPVILERFQKEIGSRGLS-DQITLKRCSHVGQHKYAGNLIIFSPDSAGKISGNW 239          
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Match: A0A2E0UXF4_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0UXF4_9CHLR)

HSP 1 Score: 83.6 bits (205), Expect = 8.570e-17
Identity = 49/131 (37.40%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   46 NRVKITACSEPSRGPDGTTDIIVYPEGL-IYSLFPGDLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGPQVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW 435
            N +K+TAC  P+ G DG T I+V+P+ + I  L   +L  L  +++  +  G +  E  PK      ++LVC H +RD RCG   P V+++M   ++   ++ + V + RSSH GGHK+AGV ++YP G+W
Sbjct:   62 NAIKLTACDLPAVG-DGET-ILVFPDRVRISGLTEDNLENLINYLRDGIERG-LKIESFPK-----FLILVCGHQNRDNRCGLAAPGVMQKMMNVIEQFDLT-EQVLVSRSSHLGGHKFAGVAVVYPSGNW 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1406.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT94_ECTSI1.670e-6172.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0001FE36D43.100e-3347.62hypothetical protein n=1 Tax=Capsaspora owczarzaki... [more]
A0A2P6NW20_9EUKA2.050e-2943.80Altered inheritance of mitochondria protein 32 n=1... [more]
L8H8Q7_ACACA1.400e-2843.41Ferredoxin, putative n=1 Tax=Acanthamoeba castella... [more]
A0A0M8KAU1_9CHLR1.730e-2241.54Uncharacterized protein n=2 Tax=Ardenticatenia Tax... [more]
A0A835YVK0_9STRA5.120e-2240.85Sucrase/ferredoxin-like-domain-containing protein ... [more]
A0A7S1TUK0_9STRA2.460e-2034.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7W1C6G9_9BACT4.170e-1939.39Sucrase ferredoxin n=1 Tax=Gemmatimonadetes bacter... [more]
UPI00053AFA7F3.540e-1738.97uncharacterized protein LOC104732769 n=3 Tax=Camel... [more]
A0A2E0UXF4_9CHLR8.570e-1737.40Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1406contigH-elongata_contig1406:13481..14530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue9.6e-50
Seed eggNOG ortholog2880.D7FT94
EggNOG free text desc.Sucrase/ferredoxin-like
EggNOG OGs2CJ2D@1,2S6XF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size438
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1406.2815.1prot_H-elongata_contig1406.2815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1406 13481..14530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.60093-CDS-H-elongata_contig1406:13480..136031622929835.60093-CDS-H-elongata_contig1406:13480..13603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1406 13481..13603 +
1691679176.9287634-CDS-H-elongata_contig1406:13480..136031691679176.9287634-CDS-H-elongata_contig1406:13480..13603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1406 13481..13603 +
1622929835.625958-CDS-H-elongata_contig1406:13815..139951622929835.625958-CDS-H-elongata_contig1406:13815..13995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1406 13816..13995 +
1691679176.9394782-CDS-H-elongata_contig1406:13815..139951691679176.9394782-CDS-H-elongata_contig1406:13815..13995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1406 13816..13995 +
1622929835.6431983-CDS-H-elongata_contig1406:14395..145301622929835.6431983-CDS-H-elongata_contig1406:14395..14530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1406 14396..14530 +
1691679176.9495342-CDS-H-elongata_contig1406:14395..145301691679176.9495342-CDS-H-elongata_contig1406:14395..14530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1406 14396..14530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1406.2815.1

>prot_H-elongata_contig1406.2815.1 ID=prot_H-elongata_contig1406.2815.1|Name=mRNA_H-elongata_contig1406.2815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
KVAKEAEANDRAAPENRVKITACSEPSRGPDGTTDIIVYPEGLIYSLFPG
DLSALELFVKSQLINGQVSSELQPKPVPYQKMVLVCTHMSRDKRCGRVGP
QVLEEMDKELKARGVSADTVALRRSSHFGGHKYAGVLIIYPQGDW*
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mRNA from alignment at H-elongata_contig1406:13481..14530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1406.2815.1 ID=mRNA_H-elongata_contig1406.2815.1|Name=mRNA_H-elongata_contig1406.2815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig1406:13481..14530+ (Himanthalia elongata Himel1 dioecious)
AAGGTTGCAAAGGAAGCGGAGGCTAACGACCGCGCGGCGCCCGAGAACCG CGTCAAGATCACCGCGTGCTCCGAACCCTCGCGTGGCCCAGATGGGACGA CGGACATTATCGTATATCCCGAGGTCTGTGTGCTTTATCAATTGAAGCTA TGGACTCTCGCCATACTTTTAATACGGAAAAGCGCGATGGGGCACACGCC TCCACAGATTATTATTGCCCCCCGAGATAAAGCGTTTTTAACCCTTTCGT CGTTTCATTTTAGTCGAAGACGTACTTCTCTCGCTGATGCTAAAACGTCT AACCCACTCCTGTCTGGACCGAACGCGTTGAACAGGGGCTAATCTACTCT CTTTTCCCGGGTGACTTGTCCGCCTTGGAGCTCTTCGTCAAGTCTCAGCT GATCAACGGCCAAGTGTCCTCTGAACTCCAGCCCAAGCCCGTTCCCTACC AGAAAATGGTATTGGTGTGCACTCACATGTCGCGCGACAAGCGCTGCGGG CGGGTGGGACCCCAGGTATGAACCATGTGTGTGCGTATGTGTGTATTTAT TAAATTGCACATTATCGCGAAATCCAGCCCTGTCGTCCTAGTCCTTCTAT GCCACTCGTATTGATCCTCCTAGATGTGTGTGTGTGTGTGTGTGTGTGTA TTCATTAAATTGCACATAACCGCGCAATCCGGCCCTGCCGTCCTAGTCCT TCTATGCCACTCGTATTGATCCTCCTAGGTGTGTGTGTGTGTGTGTGTGT GTGTGGTTTAAGTGTGACATGCGTCCGTTAGCGTGAACAAGTGTTTGAAG CCATACATGTGTGTTTCGAGGAATCGAAAAACACTTTTATTTGATTCTAT GTTTACTTACCCCAAGACTACACAAATTATTACTCATCTCGCCTTCTCCG CTCACGCCAAGGCAGGTGCTTGAGGAGATGGACAAAGAACTCAAAGCTCG GGGCGTAAGCGCTGACACAGTTGCACTGCGAAGGAGCTCGCATTTCGGCG GTCATAAGTATGCCGGAGTGCTCATCATCTACCCTCAGGGAGACTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1406:13481..14530+

>mRNA_H-elongata_contig1406.2815.1 ID=mRNA_H-elongata_contig1406.2815.1|Name=mRNA_H-elongata_contig1406.2815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig1406:13481..14530+ (Himanthalia elongata Himel1 dioecious)
AAGGTTGCAAAGGAAGCGGAGGCTAACGACCGCGCGGCGCCCGAGAACCG
CGTCAAGATCACCGCGTGCTCCGAACCCTCGCGTGGCCCAGATGGGACGA
CGGACATTATCGTATATCCCGAGAAGGTTGCAAAGGAAGCGGAGGCTAAC
GACCGCGCGGCGCCCGAGAACCGCGTCAAGATCACCGCGTGCTCCGAACC
CTCGCGTGGCCCAGATGGGACGACGGACATTATCGTATATCCCGAGGGGC
TAATCTACTCTCTTTTCCCGGGTGACTTGTCCGCCTTGGAGCTCTTCGTC
AAGTCTCAGCTGATCAACGGCCAAGTGTCCTCTGAACTCCAGCCCAAGCC
CGTTCCCTACCAGAAAATGGTATTGGTGTGCACTCACATGTCGCGCGACA
AGCGCTGCGGGCGGGTGGGACCCCAGGGGCTAATCTACTCTCTTTTCCCG
GGTGACTTGTCCGCCTTGGAGCTCTTCGTCAAGTCTCAGCTGATCAACGG
CCAAGTGTCCTCTGAACTCCAGCCCAAGCCCGTTCCCTACCAGAAAATGG
TATTGGTGTGCACTCACATGTCGCGCGACAAGCGCTGCGGGCGGGTGGGA
CCCCAGGTGCTTGAGGAGATGGACAAAGAACTCAAAGCTCGGGGCGTAAG
CGCTGACACAGTTGCACTGCGAAGGAGCTCGCATTTCGGCGGTCATAAGT
ATGCCGGAGTGCTCATCATCTACCCTCAGGGAGACTGGTGAGTGCTTGAG
GAGATGGACAAAGAACTCAAAGCTCGGGGCGTAAGCGCTGACACAGTTGC
ACTGCGAAGGAGCTCGCATTTCGGCGGTCATAAGTATGCCGGAGTGCTCA
TCATCTACCCTCAGGGAGACTGGTGA
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