mRNA_H-elongata_contig139544.2750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139544.2750.1
Unique NamemRNA_H-elongata_contig139544.2750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 1.140e-157
Identity = 227/263 (86.31%), Postives = 244/263 (92.78%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDD---GAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            C+A RREKGI++GGPNGGSGGRGGSIFLRC EGLNTLAM RHKVHYRATDGQNGQGKSRTGN+GADV++SAP GTVVRDQ+G LCGELT H+QELLVARGGRGGRGNEAFKT+R++ P   EKGEPGGERWLS+ELKLVADVG +GVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGD+   G   GLVLADIPGLLEGAH GVGLGLAFLRHVQRCR LVH+VSGDSVDPVGDYRAIQQELELFSPKLL+K+QV
Sbjct:  133 CIATRREKGISMGGPNGGSGGRGGSIFLRCSEGLNTLAMVRHKVHYRATDGQNGQGKSRTGNSGADVYVSAPLGTVVRDQEGVLCGELTEHDQELLVARGGRGGRGNEAFKTSRSKIPMFGEKGEPGGERWLSMELKLVADVGFVGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDEAEAGMDKGLVLADIPGLLEGAHEGVGLGLAFLRHVQRCRVLVHLVSGDSVDPVGDYRAIQQELELFSPKLLKKQQV 395          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A835YRC8_9STRA (GTP1/OBG-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC8_9STRA)

HSP 1 Score: 375 bits (963), Expect = 6.890e-126
Identity = 191/261 (73.18%), Postives = 213/261 (81.61%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGD-DGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            CVA RREKGIA+GGP+GG+G RGGS+ LRC EGLNTLA  R+KVHY+  DG NGQGK R   A  D+F+  PPGTV+RDQDG LCGE+T H +EL+VA+GGRGGRGN AFKT+R  APK  E GE G  RWL+LELKLVADVGLIGVPNAGKSTLLA  SNAKPKIADYPFTTV PNLGV +   +  G+  GLVLADIPGLLEGAH GVGLGLAFLRHVQRCR LVHVV+GDS DP+GD+ AIQQELELF+ KL  K QV
Sbjct:   57 CVAFRREKGIAMGGPSGGNGSRGGSVILRCDEGLNTLATVRNKVHYKGEDGSNGQGKCRHAAAPRDLFVRVPPGTVIRDQDGVLCGEVTDHGEELVVAKGGRGGRGNLAFKTDRNNAPKFMEVGEKGSMRWLTLELKLVADVGLIGVPNAGKSTLLAAVSNAKPKIADYPFTTVIPNLGVWEESAEVGGSPKGLVLADIPGLLEGAHMGVGLGLAFLRHVQRCRVLVHVVNGDSPDPLGDFEAIQQELELFNIKLAGKPQV 317          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S2RXC1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXC1_9STRA)

HSP 1 Score: 357 bits (916), Expect = 3.350e-117
Identity = 176/260 (67.69%), Postives = 207/260 (79.62%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            CVA RREKGI  GGP+G +GGRGGS++L C   LNTL M R  VH+R  DG+ GQGKSRTG +G+D  I  P GTVV+D +G   GEL    + L VA GGRGGRGN+AFKT +  AP+LAE+GEPG E WL++EL+LVADVG +GVPNAGKSTLLA  +NAKPKIA+YPFTTV PNLGVCD+L     G+GLVLADIPGLLEGAH+GVG+GLAFLRHV RCR L+HVVSGDS DPVGD++AI +EL LF+P L EK+QV
Sbjct:  109 CVAFRREKGIPYGGPSGANGGRGGSVYLVCDPSLNTLGMLRRNVHHRGGDGETGQGKSRTGRSGSDTVIPVPAGTVVKDFEGRFAGELVSKGERLCVAPGGRGGRGNQAFKTPKNNAPRLAERGEPGVEHWLNVELRLVADVGFVGVPNAGKSTLLAAVTNAKPKIANYPFTTVVPNLGVCDLLDVSQPGSGLVLADIPGLLEGAHSGVGMGLAFLRHVARCRVLLHVVSGDSEDPVGDFKAINEELRLFNPVLAEKQQV 368          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S2CMR3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMR3_9STRA)

HSP 1 Score: 330 bits (846), Expect = 1.660e-108
Identity = 164/255 (64.31%), Postives = 195/255 (76.47%), Query Frame = 1
Query:   22 KGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGA--GLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            KGI  GGP+GG+GG GGS+F  C   LNTL + R  VHYRA DG NGQGKS+ G  G  V +  PPGTV+RD +G L GEL +    + V RGG GGRGN +FKT R+ AP+LAE G+PG E WLS+EL+LVADVGL+GVPNAGKSTLL+ +SNA+PKIADYPFTTV PNLGVCD+L  D   +  GLVLADIPGLLEGAH GVG+GLAFLRHV RC+ L+HVV+G + DP+GD+ AI  EL LF+P+L  K QV
Sbjct:    1 KGIPYGGPSGGNGGSGGSVFFHCDGSLNTLGVLRRSVHYRAKDGTNGQGKSKHGCKGEHVVVPVPPGTVIRDIEGRLAGELVKDGDRICVGRGGIGGRGNLSFKTPRSNAPRLAEAGDPGAEHWLSIELRLVADVGLVGVPNAGKSTLLSAASNARPKIADYPFTTVVPNLGVCDILPQDSEESHKGLVLADIPGLLEGAHDGVGMGLAFLRHVSRCKVLIHVVNGAAEDPIGDFEAINTELRLFNPQLALKPQV 255          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A3M1FP24_9CHLR (GTPase Obg n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FP24_9CHLR)

HSP 1 Score: 324 bits (830), Expect = 1.310e-106
Identity = 170/260 (65.38%), Postives = 203/260 (78.08%), Query Frame = 1
Query:    4 VAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQD-GTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            VA RREK +  GGP GG+GG GG+++L   EGLNTL   +++VH+RA  GQ+G G ++TG  GAD+ I  PPGT+VRD + G L G+LTR  Q+LLVARGGRGGRGN AFK+ R RAP+LAEKGEPG ERW+ LELKL+ADVGLIG PNAGKSTLL+V S AKPKIADYPFTTVTPNLGV +   D      +VLADIPGLLEGAH GVGLGL FLRH++R R L+HV++G S DP+GDY AI QEL LF+P L E+ Q+
Sbjct:   20 VAFRREKFVPRGGPAGGNGGHGGNVYLVVDEGLNTLQPFKNQVHFRAERGQHGGGANKTGADGADLLIPVPPGTLVRDAETGELLGDLTRPGQKLLVARGGRGGRGNAAFKSGRNRAPRLAEKGEPGEERWIELELKLIADVGLIGAPNAGKSTLLSVVSAAKPKIADYPFTTVTPNLGVAEA--DHRT---MVLADIPGLLEGAHEGVGLGLDFLRHIERTRLLIHVLNGASPDPLGDYEAINQELLLFNPTLAERPQI 274          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A0G4ENM0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENM0_VITBC)

HSP 1 Score: 332 bits (850), Expect = 2.830e-106
Identity = 164/262 (62.60%), Postives = 203/262 (77.48%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDV--LGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            C + RREK + LGGP+GG+GGRGGS+ L     +NTL   R +VH++A  G +G  K++ G +G+D+ +  PPGTVVRD++G L GEL R    L VARGGRGGRGN +FKT    APKLAEKGE G  RW++LELK+VADVGL+G PNAGKSTLL+V SNAKPKIADYPFTTV PNLGVCD+  +   G G G+VLADIPGLLEGAH GVGLG+AFLRHV+RC+ ++H+++GDS DPVGD+ AI QEL  F+P+L +K QV
Sbjct:  233 CCSFRREKYVPLGGPDGGTGGRGGSVVLEADPNINTLYRFRRQVHWKAQSGGHGGSKNKMGESGSDLVVIVPPGTVVRDEEGRLAGELRRQGDRLTVARGGRGGRGNASFKTQANNAPKLAEKGERGTCRWINLELKIVADVGLVGCPNAGKSTLLSVVSNAKPKIADYPFTTVVPNLGVCDMPEVLSAGDGRGMVLADIPGLLEGAHRGVGLGMAFLRHVERCKIILHIINGDSPDPVGDFHAINQELLFFNPQLAKKPQV 494          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S0G4Y4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4Y4_9RHOD)

HSP 1 Score: 325 bits (833), Expect = 3.040e-106
Identity = 165/260 (63.46%), Postives = 198/260 (76.15%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            CVA RREKGI+ GGP GG+GG GG+++L   +G NTLA  R +VH+R   G+NGQGK R G AG+   ++ P GTVVR++ G L G+L    Q L VA GGRGGRGNEAFK++R  AP+ +EKGE G E WL+LELKLVADVG+IGVPNAGKSTLL   SNAKP +ADYPFTTV P LG+CD+   D  G  LV ADIPGLLEGAH G GLG+AFLRH++RCR L+H+VSG S DP+GDY AI QELELF+  L++K QV
Sbjct:   65 CVAFRREKGISKGGPAGGNGGNGGTVYLVADKGKNTLARFRGRVHFRGAPGKNGQGKGRHGVAGSSEEVTVPLGTVVRNEKGELIGDLCFDGQRLAVASGGRGGRGNEAFKSDRDVAPRFSEKGETGEEHWLNLELKLVADVGIIGVPNAGKSTLLRKLSNAKPDVADYPFTTVIPTLGICDLKWFDLEGRSLVFADIPGLLEGAHDGKGLGVAFLRHIERCRILIHLVSGASEDPIGDYEAINQELELFNVGLMDKPQV 324          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S1VVD0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVD0_9STRA)

HSP 1 Score: 323 bits (829), Expect = 6.540e-105
Identity = 167/261 (63.98%), Postives = 199/261 (76.25%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRD-QDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            CVA RREK  A GGPNGG    GG++ LRC+ GLNTLA  R KVH RA  G+NG G  + G  G D++I  PPGT+VRD +   L GEL  H QELLVARGGRGGRGN+AF T+R  APKLAE+GEPG +RWL++EL+L+ADVG +GVPNAGKSTLLA +S A+PKIA+YPFTT+ PNLGVCD LGD+GAG  LV+ DIPGL+EGA +G GLG AFLRHVQRC+ L+HVV G S DP+GD+ AI +EL  +   L  K QV
Sbjct:   34 CVAFRREKCEARGGPNGGRXXXGGNVVLRCNSGLNTLAPLRQKVHIRAIKGRNGIGHGKDGAHGKDMYIDVPPGTLVRDLKTQKLAGELREHGQELLVARGGRGGRGNKAFMTDRNTAPKLAERGEPGAQRWLNVELRLLADVGFLGVPNAGKSTLLAAASAARPKIANYPFTTIVPNLGVCD-LGDEGAG--LVMCDIPGLIEGASSGAGLGPAFLRHVQRCKVLLHVVDGTSEDPIGDFEAINKELAQYDELLSSKPQV 291          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S3V763_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V763_9STRA)

HSP 1 Score: 322 bits (826), Expect = 5.010e-104
Identity = 167/261 (63.98%), Postives = 199/261 (76.25%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQ-DGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
            CVA RREKG A+ GP+GG GG GGSI L C EGLNTLA +R++VH RA  G+NG GK + G+  +D  I  PPGTVVR+     + GEL    +ELLVARGGRGGRGNEAFKT R  APKLAE+GEPG  RWL LELKLVADVG +G PNAGKSTLLA +S A+PKIA+YPFTT+ PNLGVCD+ GD+GAG  +VL DIPGL+EGA +GVGLG+ FLRH+QRC+ ++HVV G S DP+GD+  I  EL+ +   L EK QV
Sbjct:   90 CVAFRREKGEAMKGPSGGRGGNGGSIILVCDEGLNTLAPSRNRVHVRARSGKNGIGKGKIGSKASDERIPVPPGTVVRELLTQKVAGELKIDGEELLVARGGRGGRGNEAFKTARYTAPKLAERGEPGASRWLGLELKLVADVGFLGKPNAGKSTLLAAASAARPKIANYPFTTIVPNLGVCDI-GDEGAG--IVLCDIPGLIEGASSGVGLGITFLRHIQRCKVILHVVDGTSEDPIGDFTTINGELKKYDTFLAEKPQV 347          
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A0M0JLH0_9EUKA (Gtpase obg n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLH0_9EUKA)

HSP 1 Score: 321 bits (822), Expect = 1.560e-103
Identity = 165/255 (64.71%), Postives = 192/255 (75.29%), Query Frame = 1
Query:    1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQD-GTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKL 762
            CVA RREK     GP GG+GGRGGS++L C EGLNTL   + +VH+RAT GQNG G    G+ G   ++  PPGTVVR+++ G L GEL  H  EL VARGGRGGRGN AFKT R   P+L+E+GEPG ERWLSLELKLVADVGL+G PNAGKSTLLA ++ A PKIADYPFTT+TPNLGVC    D       V+ADIPGLLEGAH GVGLG AFLRH++RCR LVHVV G + DP+GD+ A++ ELELFSP L
Sbjct:  104 CVAFRREKDKPKMGPCGGNGGRGGSVYLVCDEGLNTL---KPEVHFRATSGQNGLGHGNHGSQGESRWVRVPPGTVVREEESGQLVGELIGHGDELRVARGGRGGRGNAAFKTARDTTPRLSERGEPGAERWLSLELKLVADVGLVGCPNAGKSTLLAATTRATPKIADYPFTTITPNLGVCQPSLDGSGDDAFVVADIPGLLEGAHDGVGLGRAFLRHIERCRLLVHVVDGSAPDPLGDFEAVRTELELFSPWL 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW99_ECTSI1.140e-15786.31PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ecto... [more]
A0A835YRC8_9STRA6.890e-12673.18GTP1/OBG-domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2RXC1_9STRA3.350e-11767.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CMR3_9STRA1.660e-10864.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M1FP24_9CHLR1.310e-10665.38GTPase Obg n=1 Tax=Caldilineae bacterium TaxID=242... [more]
A0A0G4ENM0_VITBC2.830e-10662.60Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S0G4Y4_9RHOD3.040e-10663.46Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1VVD0_9STRA6.540e-10563.98Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3V763_9STRA5.010e-10463.98Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0M0JLH0_9EUKA1.560e-10364.71Gtpase obg n=1 Tax=Chrysochromulina tobinii TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139544contigH-elongata_contig139544:697..1476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score456.8
Seed ortholog evalue6.5e-126
Seed eggNOG ortholog2880.D7FW99
KEGG koko:K03979
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009706,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019866,GO:0022414,GO:0022613,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042170,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061024,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPObg1, plastid Obg/CgtA-like GTPase 1
Ec32 orthologEc-01_003890.1
Exons1
Model size780
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.9127827-CDS-H-elongata_contig139544:696..14671622929827.9127827-CDS-H-elongata_contig139544:696..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139544 697..1467 -
1691679174.5542667-CDS-H-elongata_contig139544:696..14671691679174.5542667-CDS-H-elongata_contig139544:696..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139544 697..1467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.9222937-UTR-H-elongata_contig139544:1467..14761622929827.9222937-UTR-H-elongata_contig139544:1467..1476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139544 1468..1476 -
1691679174.5662787-UTR-H-elongata_contig139544:1467..14761691679174.5662787-UTR-H-elongata_contig139544:1467..1476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139544 1468..1476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139544.2750.1prot_H-elongata_contig139544.2750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139544 697..1467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139544.2750.1

>prot_H-elongata_contig139544.2750.1 ID=prot_H-elongata_contig139544.2750.1|Name=mRNA_H-elongata_contig139544.2750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
MRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQN
GQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRG
GRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKS
TLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLE
GAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPK
LLEKKQV
back to top

mRNA from alignment at H-elongata_contig139544:697..1476-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139544.2750.1 ID=mRNA_H-elongata_contig139544.2750.1|Name=mRNA_H-elongata_contig139544.2750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig139544:697..1476- (Himanthalia elongata Himel1 dioecious)
TGCGTGGCGATGCGAAGAGAGAAGGGCATCGCCCTGGGCGGTCCCAATGG GGGCTCGGGCGGGCGCGGGGGTTCCATCTTCCTCCGCTGCCACGAGGGCC TCAACACGCTGGCCATGACGCGCCACAAGGTCCACTACCGGGCCACCGAC GGCCAGAACGGGCAAGGGAAGAGCCGAACGGGGAACGCGGGCGCGGACGT GTTCATCTCCGCGCCGCCGGGGACGGTGGTCCGAGATCAGGATGGTACCC TGTGCGGTGAGCTGACCCGACACGAACAGGAGCTCTTGGTCGCACGAGGG GGACGCGGGGGACGCGGCAACGAGGCCTTCAAGACGAACCGCGCGCGAGC TCCGAAGCTAGCGGAGAAGGGAGAGCCTGGCGGAGAGCGGTGGCTGTCGT TGGAGCTCAAGCTCGTCGCCGATGTGGGACTGATAGGCGTGCCGAACGCG GGGAAGAGCACTCTGCTGGCGGTGTCCTCCAACGCCAAGCCCAAGATAGC GGACTACCCCTTCACCACCGTCACCCCGAACCTCGGCGTGTGCGACGTGC TGGGGGACGACGGGGCCGGGGCGGGTTTGGTGCTGGCCGATATCCCCGGC CTGCTGGAAGGGGCCCACGCGGGAGTCGGGCTTGGTCTGGCGTTCCTCAG GCACGTCCAAAGATGTCGCGCGCTCGTGCACGTGGTGAGCGGTGACAGCG TTGACCCCGTGGGGGATTACCGTGCCATCCAGCAGGAGCTCGAGCTCTTC AGCCCCAAGCTCTTGGAGAAGAAGCAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig139544:697..1476-

>mRNA_H-elongata_contig139544.2750.1 ID=mRNA_H-elongata_contig139544.2750.1|Name=mRNA_H-elongata_contig139544.2750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig139544:697..1476- (Himanthalia elongata Himel1 dioecious)
ATGCGAAGAGAGAAGGGCATCGCCCTGGGCGGTCCCAATGGGGGCTCGGG
CGGGCGCGGGGGTTCCATCTTCCTCCGCTGCCACGAGGGCCTCAACACGC
TGGCCATGACGCGCCACAAGGTCCACTACCGGGCCACCGACGGCCAGAAC
GGGCAAGGGAAGAGCCGAACGGGGAACGCGGGCGCGGACGTGTTCATCTC
CGCGCCGCCGGGGACGGTGGTCCGAGATCAGGATGGTACCCTGTGCGGTG
AGCTGACCCGACACGAACAGGAGCTCTTGGTCGCACGAGGGGGACGCGGG
GGACGCGGCAACGAGGCCTTCAAGACGAACCGCGCGCGAGCTCCGAAGCT
AGCGGAGAAGGGAGAGCCTGGCGGAGAGCGGTGGCTGTCGTTGGAGCTCA
AGCTCGTCGCCGATGTGGGACTGATAGGCGTGCCGAACGCGGGGAAGAGC
ACTCTGCTGGCGGTGTCCTCCAACGCCAAGCCCAAGATAGCGGACTACCC
CTTCACCACCGTCACCCCGAACCTCGGCGTGTGCGACGTGCTGGGGGACG
ACGGGGCCGGGGCGGGTTTGGTGCTGGCCGATATCCCCGGCCTGCTGGAA
GGGGCCCACGCGGGAGTCGGGCTTGGTCTGGCGTTCCTCAGGCACGTCCA
AAGATGTCGCGCGCTCGTGCACGTGGTGAGCGGTGACAGCGTTGACCCCG
TGGGGGATTACCGTGCCATCCAGCAGGAGCTCGAGCTCTTCAGCCCCAAG
CTCTTGGAGAAGAAGCAGGTAATGCGAAGAGAGAAGGGCATCGCCCTGGG
CGGTCCCAATGGGGGCTCGGGCGGGCGCGGGGGTTCCATCTTCCTCCGCT
GCCACGAGGGCCTCAACACGCTGGCCATGACGCGCCACAAGGTCCACTAC
CGGGCCACCGACGGCCAGAACGGGCAAGGGAAGAGCCGAACGGGGAACGC
GGGCGCGGACGTGTTCATCTCCGCGCCGCCGGGGACGGTGGTCCGAGATC
AGGATGGTACCCTGTGCGGTGAGCTGACCCGACACGAACAGGAGCTCTTG
GTCGCACGAGGGGGACGCGGGGGACGCGGCAACGAGGCCTTCAAGACGAA
CCGCGCGCGAGCTCCGAAGCTAGCGGAGAAGGGAGAGCCTGGCGGAGAGC
GGTGGCTGTCGTTGGAGCTCAAGCTCGTCGCCGATGTGGGACTGATAGGC
GTGCCGAACGCGGGGAAGAGCACTCTGCTGGCGGTGTCCTCCAACGCCAA
GCCCAAGATAGCGGACTACCCCTTCACCACCGTCACCCCGAACCTCGGCG
TGTGCGACGTGCTGGGGGACGACGGGGCCGGGGCGGGTTTGGTGCTGGCC
GATATCCCCGGCCTGCTGGAAGGGGCCCACGCGGGAGTCGGGCTTGGTCT
GGCGTTCCTCAGGCACGTCCAAAGATGTCGCGCGCTCGTGCACGTGGTGA
GCGGTGACAGCGTTGACCCCGTGGGGGATTACCGTGCCATCCAGCAGGAG
CTCGAGCTCTTCAGCCCCAAGCTCTTGGAGAAGAAGCAGGTA
back to top