mRNA_H-elongata_contig139544.2750.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI) HSP 1 Score: 459 bits (1181), Expect = 1.140e-157 Identity = 227/263 (86.31%), Postives = 244/263 (92.78%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDD---GAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
C+A RREKGI++GGPNGGSGGRGGSIFLRC EGLNTLAM RHKVHYRATDGQNGQGKSRTGN+GADV++SAP GTVVRDQ+G LCGELT H+QELLVARGGRGGRGNEAFKT+R++ P EKGEPGGERWLS+ELKLVADVG +GVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGD+ G GLVLADIPGLLEGAH GVGLGLAFLRHVQRCR LVH+VSGDSVDPVGDYRAIQQELELFSPKLL+K+QV
Sbjct: 133 CIATRREKGISMGGPNGGSGGRGGSIFLRCSEGLNTLAMVRHKVHYRATDGQNGQGKSRTGNSGADVYVSAPLGTVVRDQEGVLCGELTEHDQELLVARGGRGGRGNEAFKTSRSKIPMFGEKGEPGGERWLSMELKLVADVGFVGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDEAEAGMDKGLVLADIPGLLEGAHEGVGLGLAFLRHVQRCRVLVHLVSGDSVDPVGDYRAIQQELELFSPKLLKKQQV 395
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A835YRC8_9STRA (GTP1/OBG-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC8_9STRA) HSP 1 Score: 375 bits (963), Expect = 6.890e-126 Identity = 191/261 (73.18%), Postives = 213/261 (81.61%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGD-DGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
CVA RREKGIA+GGP+GG+G RGGS+ LRC EGLNTLA R+KVHY+ DG NGQGK R A D+F+ PPGTV+RDQDG LCGE+T H +EL+VA+GGRGGRGN AFKT+R APK E GE G RWL+LELKLVADVGLIGVPNAGKSTLLA SNAKPKIADYPFTTV PNLGV + + G+ GLVLADIPGLLEGAH GVGLGLAFLRHVQRCR LVHVV+GDS DP+GD+ AIQQELELF+ KL K QV
Sbjct: 57 CVAFRREKGIAMGGPSGGNGSRGGSVILRCDEGLNTLATVRNKVHYKGEDGSNGQGKCRHAAAPRDLFVRVPPGTVIRDQDGVLCGEVTDHGEELVVAKGGRGGRGNLAFKTDRNNAPKFMEVGEKGSMRWLTLELKLVADVGLIGVPNAGKSTLLAAVSNAKPKIADYPFTTVIPNLGVWEESAEVGGSPKGLVLADIPGLLEGAHMGVGLGLAFLRHVQRCRVLVHVVNGDSPDPLGDFEAIQQELELFNIKLAGKPQV 317
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S2RXC1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXC1_9STRA) HSP 1 Score: 357 bits (916), Expect = 3.350e-117 Identity = 176/260 (67.69%), Postives = 207/260 (79.62%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
CVA RREKGI GGP+G +GGRGGS++L C LNTL M R VH+R DG+ GQGKSRTG +G+D I P GTVV+D +G GEL + L VA GGRGGRGN+AFKT + AP+LAE+GEPG E WL++EL+LVADVG +GVPNAGKSTLLA +NAKPKIA+YPFTTV PNLGVCD+L G+GLVLADIPGLLEGAH+GVG+GLAFLRHV RCR L+HVVSGDS DPVGD++AI +EL LF+P L EK+QV
Sbjct: 109 CVAFRREKGIPYGGPSGANGGRGGSVYLVCDPSLNTLGMLRRNVHHRGGDGETGQGKSRTGRSGSDTVIPVPAGTVVKDFEGRFAGELVSKGERLCVAPGGRGGRGNQAFKTPKNNAPRLAERGEPGVEHWLNVELRLVADVGFVGVPNAGKSTLLAAVTNAKPKIANYPFTTVVPNLGVCDLLDVSQPGSGLVLADIPGLLEGAHSGVGMGLAFLRHVARCRVLLHVVSGDSEDPVGDFKAINEELRLFNPVLAEKQQV 368
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S2CMR3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMR3_9STRA) HSP 1 Score: 330 bits (846), Expect = 1.660e-108 Identity = 164/255 (64.31%), Postives = 195/255 (76.47%), Query Frame = 1
Query: 22 KGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGA--GLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
KGI GGP+GG+GG GGS+F C LNTL + R VHYRA DG NGQGKS+ G G V + PPGTV+RD +G L GEL + + V RGG GGRGN +FKT R+ AP+LAE G+PG E WLS+EL+LVADVGL+GVPNAGKSTLL+ +SNA+PKIADYPFTTV PNLGVCD+L D + GLVLADIPGLLEGAH GVG+GLAFLRHV RC+ L+HVV+G + DP+GD+ AI EL LF+P+L K QV
Sbjct: 1 KGIPYGGPSGGNGGSGGSVFFHCDGSLNTLGVLRRSVHYRAKDGTNGQGKSKHGCKGEHVVVPVPPGTVIRDIEGRLAGELVKDGDRICVGRGGIGGRGNLSFKTPRSNAPRLAEAGDPGAEHWLSIELRLVADVGLVGVPNAGKSTLLSAASNARPKIADYPFTTVVPNLGVCDILPQDSEESHKGLVLADIPGLLEGAHDGVGMGLAFLRHVSRCKVLIHVVNGAAEDPIGDFEAINTELRLFNPQLALKPQV 255
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A3M1FP24_9CHLR (GTPase Obg n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FP24_9CHLR) HSP 1 Score: 324 bits (830), Expect = 1.310e-106 Identity = 170/260 (65.38%), Postives = 203/260 (78.08%), Query Frame = 1
Query: 4 VAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQD-GTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
VA RREK + GGP GG+GG GG+++L EGLNTL +++VH+RA GQ+G G ++TG GAD+ I PPGT+VRD + G L G+LTR Q+LLVARGGRGGRGN AFK+ R RAP+LAEKGEPG ERW+ LELKL+ADVGLIG PNAGKSTLL+V S AKPKIADYPFTTVTPNLGV + D +VLADIPGLLEGAH GVGLGL FLRH++R R L+HV++G S DP+GDY AI QEL LF+P L E+ Q+
Sbjct: 20 VAFRREKFVPRGGPAGGNGGHGGNVYLVVDEGLNTLQPFKNQVHFRAERGQHGGGANKTGADGADLLIPVPPGTLVRDAETGELLGDLTRPGQKLLVARGGRGGRGNAAFKSGRNRAPRLAEKGEPGEERWIELELKLIADVGLIGAPNAGKSTLLSVVSAAKPKIADYPFTTVTPNLGVAEA--DHRT---MVLADIPGLLEGAHEGVGLGLDFLRHIERTRLLIHVLNGASPDPLGDYEAINQELLLFNPTLAERPQI 274
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A0G4ENM0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENM0_VITBC) HSP 1 Score: 332 bits (850), Expect = 2.830e-106 Identity = 164/262 (62.60%), Postives = 203/262 (77.48%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDV--LGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
C + RREK + LGGP+GG+GGRGGS+ L +NTL R +VH++A G +G K++ G +G+D+ + PPGTVVRD++G L GEL R L VARGGRGGRGN +FKT APKLAEKGE G RW++LELK+VADVGL+G PNAGKSTLL+V SNAKPKIADYPFTTV PNLGVCD+ + G G G+VLADIPGLLEGAH GVGLG+AFLRHV+RC+ ++H+++GDS DPVGD+ AI QEL F+P+L +K QV
Sbjct: 233 CCSFRREKYVPLGGPDGGTGGRGGSVVLEADPNINTLYRFRRQVHWKAQSGGHGGSKNKMGESGSDLVVIVPPGTVVRDEEGRLAGELRRQGDRLTVARGGRGGRGNASFKTQANNAPKLAEKGERGTCRWINLELKIVADVGLVGCPNAGKSTLLSVVSNAKPKIADYPFTTVVPNLGVCDMPEVLSAGDGRGMVLADIPGLLEGAHRGVGLGMAFLRHVERCKIILHIINGDSPDPVGDFHAINQELLFFNPQLAKKPQV 494
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S0G4Y4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4Y4_9RHOD) HSP 1 Score: 325 bits (833), Expect = 3.040e-106 Identity = 165/260 (63.46%), Postives = 198/260 (76.15%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
CVA RREKGI+ GGP GG+GG GG+++L +G NTLA R +VH+R G+NGQGK R G AG+ ++ P GTVVR++ G L G+L Q L VA GGRGGRGNEAFK++R AP+ +EKGE G E WL+LELKLVADVG+IGVPNAGKSTLL SNAKP +ADYPFTTV P LG+CD+ D G LV ADIPGLLEGAH G GLG+AFLRH++RCR L+H+VSG S DP+GDY AI QELELF+ L++K QV
Sbjct: 65 CVAFRREKGISKGGPAGGNGGNGGTVYLVADKGKNTLARFRGRVHFRGAPGKNGQGKGRHGVAGSSEEVTVPLGTVVRNEKGELIGDLCFDGQRLAVASGGRGGRGNEAFKSDRDVAPRFSEKGETGEEHWLNLELKLVADVGIIGVPNAGKSTLLRKLSNAKPDVADYPFTTVIPTLGICDLKWFDLEGRSLVFADIPGLLEGAHDGKGLGVAFLRHIERCRILIHLVSGASEDPIGDYEAINQELELFNVGLMDKPQV 324
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S1VVD0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVD0_9STRA) HSP 1 Score: 323 bits (829), Expect = 6.540e-105 Identity = 167/261 (63.98%), Postives = 199/261 (76.25%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRD-QDGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
CVA RREK A GGPNGG GG++ LRC+ GLNTLA R KVH RA G+NG G + G G D++I PPGT+VRD + L GEL H QELLVARGGRGGRGN+AF T+R APKLAE+GEPG +RWL++EL+L+ADVG +GVPNAGKSTLLA +S A+PKIA+YPFTT+ PNLGVCD LGD+GAG LV+ DIPGL+EGA +G GLG AFLRHVQRC+ L+HVV G S DP+GD+ AI +EL + L K QV
Sbjct: 34 CVAFRREKCEARGGPNGGRXXXGGNVVLRCNSGLNTLAPLRQKVHIRAIKGRNGIGHGKDGAHGKDMYIDVPPGTLVRDLKTQKLAGELREHGQELLVARGGRGGRGNKAFMTDRNTAPKLAERGEPGAQRWLNVELRLLADVGFLGVPNAGKSTLLAAASAARPKIANYPFTTIVPNLGVCD-LGDEGAG--LVMCDIPGLIEGASSGAGLGPAFLRHVQRCKVLLHVVDGTSEDPIGDFEAINKELAQYDELLSSKPQV 291
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A7S3V763_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V763_9STRA) HSP 1 Score: 322 bits (826), Expect = 5.010e-104 Identity = 167/261 (63.98%), Postives = 199/261 (76.25%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQ-DGTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKLLEKKQV 780
CVA RREKG A+ GP+GG GG GGSI L C EGLNTLA +R++VH RA G+NG GK + G+ +D I PPGTVVR+ + GEL +ELLVARGGRGGRGNEAFKT R APKLAE+GEPG RWL LELKLVADVG +G PNAGKSTLLA +S A+PKIA+YPFTT+ PNLGVCD+ GD+GAG +VL DIPGL+EGA +GVGLG+ FLRH+QRC+ ++HVV G S DP+GD+ I EL+ + L EK QV
Sbjct: 90 CVAFRREKGEAMKGPSGGRGGNGGSIILVCDEGLNTLAPSRNRVHVRARSGKNGIGKGKIGSKASDERIPVPPGTVVRELLTQKVAGELKIDGEELLVARGGRGGRGNEAFKTARYTAPKLAERGEPGASRWLGLELKLVADVGFLGKPNAGKSTLLAAASAARPKIANYPFTTIVPNLGVCDI-GDEGAG--IVLCDIPGLIEGASSGVGLGITFLRHIQRCKVILHVVDGTSEDPIGDFTTINGELKKYDTFLAEKPQV 347
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Match: A0A0M0JLH0_9EUKA (Gtpase obg n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLH0_9EUKA) HSP 1 Score: 321 bits (822), Expect = 1.560e-103 Identity = 165/255 (64.71%), Postives = 192/255 (75.29%), Query Frame = 1
Query: 1 CVAMRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNGQGKSRTGNAGADVFISAPPGTVVRDQD-GTLCGELTRHEQELLVARGGRGGRGNEAFKTNRARAPKLAEKGEPGGERWLSLELKLVADVGLIGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDDGAGAGLVLADIPGLLEGAHAGVGLGLAFLRHVQRCRALVHVVSGDSVDPVGDYRAIQQELELFSPKL 762
CVA RREK GP GG+GGRGGS++L C EGLNTL + +VH+RAT GQNG G G+ G ++ PPGTVVR+++ G L GEL H EL VARGGRGGRGN AFKT R P+L+E+GEPG ERWLSLELKLVADVGL+G PNAGKSTLLA ++ A PKIADYPFTT+TPNLGVC D V+ADIPGLLEGAH GVGLG AFLRH++RCR LVHVV G + DP+GD+ A++ ELELFSP L
Sbjct: 104 CVAFRREKDKPKMGPCGGNGGRGGSVYLVCDEGLNTL---KPEVHFRATSGQNGLGHGNHGSQGESRWVRVPPGTVVREEESGQLVGELIGHGDELRVARGGRGGRGNAAFKTARDTTPRLSERGEPGAERWLSLELKLVADVGLVGCPNAGKSTLLAATTRATPKIADYPFTTITPNLGVCQPSLDGSGDDAFVVADIPGLLEGAHDGVGLGRAFLRHIERCRLLVHVVDGSAPDPLGDFEAVRTELELFSPWL 355 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139544.2750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139544.2750.1 >prot_H-elongata_contig139544.2750.1 ID=prot_H-elongata_contig139544.2750.1|Name=mRNA_H-elongata_contig139544.2750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp MRREKGIALGGPNGGSGGRGGSIFLRCHEGLNTLAMTRHKVHYRATDGQNback to top mRNA from alignment at H-elongata_contig139544:697..1476- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139544.2750.1 ID=mRNA_H-elongata_contig139544.2750.1|Name=mRNA_H-elongata_contig139544.2750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig139544:697..1476- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139544:697..1476- >mRNA_H-elongata_contig139544.2750.1 ID=mRNA_H-elongata_contig139544.2750.1|Name=mRNA_H-elongata_contig139544.2750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig139544:697..1476- (Himanthalia elongata Himel1 dioecious)back to top |