mRNA_H-elongata_contig139197.2730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139197.2730.1
Unique NamemRNA_H-elongata_contig139197.2730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139197.2730.1 vs. uniprot
Match: D8LRC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC7_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.220e-40
Identity = 71/90 (78.89%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 ETKESLRKEYLETESPPDETIIGMQRSMLRTLGFAPDHGVACLNTFSKDYPENLKLQMRLRQFMQCASMGRQEAILGKEEMTKRMQMQQV 270
            ETKESLRKE+LET+ PPDETI+GMQRSMLRTLGF+PDHGVACLN FSKD+P++ KLQMRL+QFM+CASM RQEA+LGKEE+TKRM + Q 
Sbjct:  223 ETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHVHQA 312
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BLAST of mRNA_H-elongata_contig139197.2730.1 vs. uniprot
Match: A0A835ZBF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.660e-7
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:    1 ETKESLRKEYLETESPPDETIIGMQRSMLRTLGFAPDHGVACLNTFSKDYPENLKLQMRLRQFMQCASMGRQEAILGKEEMTKRMQMQ 264
            ETK  L + + ET+ PP++ II MQR ML  LG  PDHG++CLN        +  +    ++F   A    QEA++G ++    M  Q
Sbjct:  175 ETKAKLAQRFAETQEPPNDYIIEMQRDMLACLGIEPDHGISCLNKHVTS--GDADIASGAQRFAMSAQRACQEAVMGTDKFEAHMAQQ 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139197.2730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRC7_ECTSI1.220e-4078.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBF2_9STRA1.660e-736.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139197contigH-elongata_contig139197:462..1430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.1034484-CDS-H-elongata_contig139197:461..5551622929826.1034484-CDS-H-elongata_contig139197:461..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139197 462..555 -
1691679174.010934-CDS-H-elongata_contig139197:461..5551691679174.010934-CDS-H-elongata_contig139197:461..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139197 462..555 -
1622929826.1182044-CDS-H-elongata_contig139197:1233..14301622929826.1182044-CDS-H-elongata_contig139197:1233..1430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139197 1234..1430 -
1691679174.0194545-CDS-H-elongata_contig139197:1233..14301691679174.0194545-CDS-H-elongata_contig139197:1233..1430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139197 1234..1430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139197.2730.1prot_H-elongata_contig139197.2730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139197 462..1430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139197.2730.1

>prot_H-elongata_contig139197.2730.1 ID=prot_H-elongata_contig139197.2730.1|Name=mRNA_H-elongata_contig139197.2730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ETKESLRKEYLETESPPDETIIGMQRSMLRTLGFAPDHGVACLNTFSKDY
PENLKLQMRLRQFMQCASMGRQEAILGKEEMTKRMQMQQVEDRQAS*
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mRNA from alignment at H-elongata_contig139197:462..1430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139197.2730.1 ID=mRNA_H-elongata_contig139197.2730.1|Name=mRNA_H-elongata_contig139197.2730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at H-elongata_contig139197:462..1430- (Himanthalia elongata Himel1 dioecious)
GAGACGAAGGAATCGCTGCGGAAGGAATACCTGGAGACGGAGTCACCTCC
TGACGAGACCATCATTGGCATGCAGCGGTCGATGCTGCGAACGCTCGGGT
TTGCGCCCGACCATGGAGTCGCCTGCCTCAACACCTTCTCGAAGGACTAC
CCGGAAAACTTGAAGCTGCAGATGCGGCTTCGACAGTTCATGCAGTGGTA
AGTGAAAACAAATAAGATGAAGAAAAAGAGGAAATGACGTTCGGCCGTTC
CATGACCCCTTGTCGTGCGACATGGGGTGCGTGCACGGTCTCGCTTAAGT
GTGCGGGGACTGGGCGGCGTTGCTCGGCAAATATTTTCGATTTATTCGCG
GTAATGTACGAAAAAATGTATTAAACATATGTTTTGGTGGTTGTTAGGAT
TTGAGTATAGTAGGGCAGTGATGAGGGGCTGACACCTCCCAGAGCGGATT
GTGCTTGTAAGCCTTGCTCGCGGTTCAAAGTGGTGACGAAAGCCTAGAGC
AGAACAGACAGTGTAATCTACAACGCTTGCGCGTATGCTTACGCGAGTGC
GCGAGCCGCAGAACTCCCCCCCCCTCCCCGCCATCGCGCCGATAAACTCC
CTAGTTTTTCATTTTGAGTATCCCGGTGTGGTGTGCTACCGGTAAGAGAT
GCCGTATTCAGGAGGCTAGGGGATTATTGTGTTTTTTTAAATATCGTTGC
TGTTGAGGGGCATCCAGTGAAATCAGTCCCGTGTATCGAAGTCACGACGG
GAAGCCATGCCAGCGCACGACATTAGCCGCGGGGGACATTTATCCAGTCT
ACGTAGCAACTCACCGAGGTTCGCCTCCTTCACCCTCTCACTCCTCTTTC
CCCTGGCATGAACTGTTGTCGACAGCGCCAGCATGGGGCGGCAGGAGGCC
ATTCTGGGCAAGGAGGAGATGACAAAGAGGATGCAGATGCAGCAGGTGGA
AGACCGACAAGCATCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig139197:462..1430-

>mRNA_H-elongata_contig139197.2730.1 ID=mRNA_H-elongata_contig139197.2730.1|Name=mRNA_H-elongata_contig139197.2730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig139197:462..1430- (Himanthalia elongata Himel1 dioecious)
GAGACGAAGGAATCGCTGCGGAAGGAATACCTGGAGACGGAGTCACCTCC
TGACGAGACCATCATTGGCATGCAGCGGTCGATGCTGCGAACGCTCGGGT
TTGCGCCCGACCATGGAGTCGCCTGCCTCAACACCTTCTCGAAGGACTAC
CCGGAAAACTTGAAGCTGCAGATGCGGCTTCGACAGTTCATGCAGTGGAG
ACGAAGGAATCGCTGCGGAAGGAATACCTGGAGACGGAGTCACCTCCTGA
CGAGACCATCATTGGCATGCAGCGGTCGATGCTGCGAACGCTCGGGTTTG
CGCCCGACCATGGAGTCGCCTGCCTCAACACCTTCTCGAAGGACTACCCG
GAAAACTTGAAGCTGCAGATGCGGCTTCGACAGTTCATGCAGTGCGCCAG
CATGGGGCGGCAGGAGGCCATTCTGGGCAAGGAGGAGATGACAAAGAGGA
TGCAGATGCAGCAGGTGGAAGACCGACAAGCATCTTAACGCCAGCATGGG
GCGGCAGGAGGCCATTCTGGGCAAGGAGGAGATGACAAAGAGGATGCAGA
TGCAGCAGGTGGAAGACCGACAAGCATCTTAA
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