mRNA_H-elongata_contig138541.2691.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: D8LJ46_ECTSI (Similar to deoxynucleotidyltransferase, terminal, interacting protein 2, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ46_ECTSI) HSP 1 Score: 114 bits (285), Expect = 4.900e-28 Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLKWKP 225
Q+GTVKEGP E+FSSR+ NK+RKKTLVDELLVAD+ FRAY+KNQY SIQ++K++GGK Y + RKR GG++WKP
Sbjct: 465 QIGTVKEGPSEYFSSRMTNKERKKTLVDELLVADDAFRAYSKNQYGSIQSRKRAGGKAAYNDQKRKRKGGMQWKP 539
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A397U2L9_9GLOM (Fcf2 pre-rRNA processing-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U2L9_9GLOM) HSP 1 Score: 78.2 bits (191), Expect = 1.110e-16 Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKR 201
Q+GTV EGP EF+SSRL K+RKKT+VDEL+ ADE + Y K ++ IQ K+SGGK HYK+L +KR
Sbjct: 71 QIGTVIEGPTEFYSSRLTRKERKKTIVDELM-ADEEAKKYYKRKFLEIQKTKQSGGKKHYKQLKKKR 136
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A8H6CHT9_9LECA (Fcf2 domain-containing protein n=2 Tax=Letharia TaxID=112415 RepID=A0A8H6CHT9_9LECA) HSP 1 Score: 78.2 bits (191), Expect = 6.470e-16 Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
Q+G + EGP E++SSRLPNK+RK+TLV E+L A+E + K +YN IQA K SG + +YK+L KR+GG++
Sbjct: 159 QIGQIIEGPTEYYSSRLPNKERKRTLVGEIL-ANEKYTGRFKKKYNEIQASKTSGKRAYYKKLKEKRSGGIR 229
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A3D8SSZ5_9HELO (Putative rRNA-processing protein fcf2 n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8SSZ5_9HELO) HSP 1 Score: 77.8 bits (190), Expect = 7.680e-16 Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGG 210
QVGT+ EGP EFFS+RL NK+RK+T V+E+L + + + + K++YN IQ+KK SG K HYK+L KR GG
Sbjct: 152 QVGTIIEGPTEFFSARLSNKERKRTFVEEVLAGESSTQKF-KSKYNEIQSKKISGKKAHYKKLKGKRRGG 220
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A397TD17_9GLOM (Fcf2 pre-rRNA processing-domain-containing protein (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TD17_9GLOM) HSP 1 Score: 75.1 bits (183), Expect = 1.070e-15 Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKR 201
+VGT+KEGP +F+SSR+P K+RK+T+ DEL+ ADE ++Y K +++ IQ K+SGGK ++K+L KR
Sbjct: 50 EVGTIKEGPTDFYSSRIPRKERKQTIADELM-ADEQSKSYFKRKFSEIQEVKQSGGKKYFKQLKTKR 115
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A8H3IB41_9LECA (Fcf2 domain-containing protein n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3IB41_9LECA) HSP 1 Score: 77.4 bits (189), Expect = 1.230e-15 Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
Q+GT +GP EF+SSR+PNK+RKK VDE+L A+E+ + K++YN IQ+ K SG K +YK+L KR+ G++
Sbjct: 157 QIGTFIQGPTEFYSSRIPNKERKKNFVDEVLTAEESTGRF-KSRYNDIQSSKMSGKKAYYKKLKNKRSNGIR 227
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: M2ZTK8_PSEFD (Fcf2 domain-containing protein n=4 Tax=Pseudocercospora TaxID=131324 RepID=M2ZTK8_PSEFD) HSP 1 Score: 76.6 bits (187), Expect = 2.970e-15 Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
QVGT+ EGP EFFS R+ NKKRK+TLV+E+L ++ + KN+Y +Q KK SG K YK L KR GG+K
Sbjct: 167 QVGTIIEGPTEFFSGRIENKKRKRTLVEEVLAGEQETHRF-KNKYAQLQEKKTSGKKAFYKALKEKRKGGIK 237
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A194XJ59_9HELO (Putative rRNA-processing protein fcf2 n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194XJ59_9HELO) HSP 1 Score: 75.9 bits (185), Expect = 4.410e-15 Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGG 210
QVGT+ EGP E+FS+RL NK RK+TLV+E+L + T + K +YN IQA K SG K HYK+LM R GG
Sbjct: 151 QVGTIIEGPTEYFSARLTNKDRKRTLVEEVLAGEVTTGRF-KAKYNEIQAAKTSGKKAHYKKLMAMRKGG 219
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A6G1G1W3_9PEZI (uncharacterized protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1G1W3_9PEZI) HSP 1 Score: 72.4 bits (176), Expect = 6.340e-15 Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
QVGT+ EGP EFFS+RL NK+RKKTLV+E+L A+ + K +YN IQ KK SG + HY L KRT K
Sbjct: 25 QVGTIIEGPTEFFSARLTNKERKKTLVEEILDAEREGGRF-KRKYNEIQEKKMSGKRGHYNALRAKRTKQFK 95
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A2Z6RWF8_9GLOM (Fcf2 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RWF8_9GLOM) HSP 1 Score: 76.6 bits (187), Expect = 8.080e-15 Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKR 201
++GT+KEGP EF+SSR+P K+RK+T+ DELL A+E R Y K ++ IQ K+SGGK +YK+L KR
Sbjct: 262 EIGTIKEGPAEFYSSRIPRKERKQTIADELL-ANEQSRRYFKRKFTEIQEIKQSGGKKYYKQLKAKR 327 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig138541.2691.1 >prot_H-elongata_contig138541.2691.1 ID=prot_H-elongata_contig138541.2691.1|Name=mRNA_H-elongata_contig138541.2691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAback to top mRNA from alignment at H-elongata_contig138541:73..789+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig138541.2691.1 ID=mRNA_H-elongata_contig138541.2691.1|Name=mRNA_H-elongata_contig138541.2691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig138541:73..789+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig138541:73..789+ >mRNA_H-elongata_contig138541.2691.1 ID=mRNA_H-elongata_contig138541.2691.1|Name=mRNA_H-elongata_contig138541.2691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig138541:73..789+ (Himanthalia elongata Himel1 dioecious)back to top |