mRNA_H-elongata_contig138541.2691.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138541.2691.1
Unique NamemRNA_H-elongata_contig138541.2691.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: D8LJ46_ECTSI (Similar to deoxynucleotidyltransferase, terminal, interacting protein 2, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ46_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.900e-28
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLKWKP 225
            Q+GTVKEGP E+FSSR+ NK+RKKTLVDELLVAD+ FRAY+KNQY SIQ++K++GGK  Y +  RKR GG++WKP
Sbjct:  465 QIGTVKEGPSEYFSSRMTNKERKKTLVDELLVADDAFRAYSKNQYGSIQSRKRAGGKAAYNDQKRKRKGGMQWKP 539          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A397U2L9_9GLOM (Fcf2 pre-rRNA processing-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U2L9_9GLOM)

HSP 1 Score: 78.2 bits (191), Expect = 1.110e-16
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKR 201
            Q+GTV EGP EF+SSRL  K+RKKT+VDEL+ ADE  + Y K ++  IQ  K+SGGK HYK+L +KR
Sbjct:   71 QIGTVIEGPTEFYSSRLTRKERKKTIVDELM-ADEEAKKYYKRKFLEIQKTKQSGGKKHYKQLKKKR 136          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A8H6CHT9_9LECA (Fcf2 domain-containing protein n=2 Tax=Letharia TaxID=112415 RepID=A0A8H6CHT9_9LECA)

HSP 1 Score: 78.2 bits (191), Expect = 6.470e-16
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
            Q+G + EGP E++SSRLPNK+RK+TLV E+L A+E +    K +YN IQA K SG + +YK+L  KR+GG++
Sbjct:  159 QIGQIIEGPTEYYSSRLPNKERKRTLVGEIL-ANEKYTGRFKKKYNEIQASKTSGKRAYYKKLKEKRSGGIR 229          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A3D8SSZ5_9HELO (Putative rRNA-processing protein fcf2 n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8SSZ5_9HELO)

HSP 1 Score: 77.8 bits (190), Expect = 7.680e-16
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGG 210
            QVGT+ EGP EFFS+RL NK+RK+T V+E+L  + + + + K++YN IQ+KK SG K HYK+L  KR GG
Sbjct:  152 QVGTIIEGPTEFFSARLSNKERKRTFVEEVLAGESSTQKF-KSKYNEIQSKKISGKKAHYKKLKGKRRGG 220          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A397TD17_9GLOM (Fcf2 pre-rRNA processing-domain-containing protein (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TD17_9GLOM)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKR 201
            +VGT+KEGP +F+SSR+P K+RK+T+ DEL+ ADE  ++Y K +++ IQ  K+SGGK ++K+L  KR
Sbjct:   50 EVGTIKEGPTDFYSSRIPRKERKQTIADELM-ADEQSKSYFKRKFSEIQEVKQSGGKKYFKQLKTKR 115          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A8H3IB41_9LECA (Fcf2 domain-containing protein n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3IB41_9LECA)

HSP 1 Score: 77.4 bits (189), Expect = 1.230e-15
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
            Q+GT  +GP EF+SSR+PNK+RKK  VDE+L A+E+   + K++YN IQ+ K SG K +YK+L  KR+ G++
Sbjct:  157 QIGTFIQGPTEFYSSRIPNKERKKNFVDEVLTAEESTGRF-KSRYNDIQSSKMSGKKAYYKKLKNKRSNGIR 227          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: M2ZTK8_PSEFD (Fcf2 domain-containing protein n=4 Tax=Pseudocercospora TaxID=131324 RepID=M2ZTK8_PSEFD)

HSP 1 Score: 76.6 bits (187), Expect = 2.970e-15
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
            QVGT+ EGP EFFS R+ NKKRK+TLV+E+L  ++    + KN+Y  +Q KK SG K  YK L  KR GG+K
Sbjct:  167 QVGTIIEGPTEFFSGRIENKKRKRTLVEEVLAGEQETHRF-KNKYAQLQEKKTSGKKAFYKALKEKRKGGIK 237          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A194XJ59_9HELO (Putative rRNA-processing protein fcf2 n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194XJ59_9HELO)

HSP 1 Score: 75.9 bits (185), Expect = 4.410e-15
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGG 210
            QVGT+ EGP E+FS+RL NK RK+TLV+E+L  + T   + K +YN IQA K SG K HYK+LM  R GG
Sbjct:  151 QVGTIIEGPTEYFSARLTNKDRKRTLVEEVLAGEVTTGRF-KAKYNEIQAAKTSGKKAHYKKLMAMRKGG 219          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A6G1G1W3_9PEZI (uncharacterized protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1G1W3_9PEZI)

HSP 1 Score: 72.4 bits (176), Expect = 6.340e-15
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKRTGGLK 216
            QVGT+ EGP EFFS+RL NK+RKKTLV+E+L A+     + K +YN IQ KK SG + HY  L  KRT   K
Sbjct:   25 QVGTIIEGPTEFFSARLTNKERKKTLVEEILDAEREGGRF-KRKYNEIQEKKMSGKRGHYNALRAKRTKQFK 95          
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Match: A0A2Z6RWF8_9GLOM (Fcf2 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RWF8_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 8.080e-15
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQAKKKSGGKTHYKELMRKR 201
            ++GT+KEGP EF+SSR+P K+RK+T+ DELL A+E  R Y K ++  IQ  K+SGGK +YK+L  KR
Sbjct:  262 EIGTIKEGPAEFYSSRIPRKERKQTIADELL-ANEQSRRYFKRKFTEIQEIKQSGGKKYYKQLKAKR 327          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138541.2691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ46_ECTSI4.900e-2869.33Similar to deoxynucleotidyltransferase, terminal, ... [more]
A0A397U2L9_9GLOM1.110e-1659.70Fcf2 pre-rRNA processing-domain-containing protein... [more]
A0A8H6CHT9_9LECA6.470e-1652.78Fcf2 domain-containing protein n=2 Tax=Letharia Ta... [more]
A0A3D8SSZ5_9HELO7.680e-1655.71Putative rRNA-processing protein fcf2 n=2 Tax=Cole... [more]
A0A397TD17_9GLOM1.070e-1552.24Fcf2 pre-rRNA processing-domain-containing protein... [more]
A0A8H3IB41_9LECA1.230e-1551.39Fcf2 domain-containing protein n=1 Tax=Heterodermi... [more]
M2ZTK8_PSEFD2.970e-1554.17Fcf2 domain-containing protein n=4 Tax=Pseudocerco... [more]
A0A194XJ59_9HELO4.410e-1557.14Putative rRNA-processing protein fcf2 n=1 Tax=Moll... [more]
A0A6G1G1W3_9PEZI6.340e-1555.56uncharacterized protein n=1 Tax=Eremomyces bilater... [more]
A0A2Z6RWF8_9GLOM8.080e-1555.22Fcf2 domain-containing protein n=2 Tax=Rhizophagus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138541contigH-elongata_contig138541:73..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D8LJ46
Preferred nameDNTTIP2
KEGG rclassRC00055,RC00061,RC00064,RC00090,RC00523
KEGG koko:K01867,ko:K03942,ko:K11205,ko:K20294
KEGG TC3.D.1.6
KEGG ReactionR00894,R03664,R10993,R11945
KEGG Pathwayko00190,ko00270,ko00480,ko00970,ko01100,ko04216,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00270,map00480,map00970,map01100,map04216,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00118,M00143,M00359,M00360
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG3100@1,KOG3100@2759
EC1.6.5.3,1.6.99.3,6.1.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.143682-CDS-H-elongata_contig138541:72..1851622929822.143682-CDS-H-elongata_contig138541:72..185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138541 73..185 +
1691679172.3752844-CDS-H-elongata_contig138541:72..1851691679172.3752844-CDS-H-elongata_contig138541:72..185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138541 73..185 +
1622929822.1584294-CDS-H-elongata_contig138541:674..7891622929822.1584294-CDS-H-elongata_contig138541:674..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138541 675..789 +
1691679172.3912492-CDS-H-elongata_contig138541:674..7891691679172.3912492-CDS-H-elongata_contig138541:674..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138541 675..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138541.2691.1prot_H-elongata_contig138541.2691.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138541 73..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138541.2691.1

>prot_H-elongata_contig138541.2691.1 ID=prot_H-elongata_contig138541.2691.1|Name=mRNA_H-elongata_contig138541.2691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
QVGTVKEGPGEFFSSRLPNKKRKKTLVDELLVADETFRAYAKNQYNSIQA
KKKSGGKTHYKELMRKRTGGLKWKP*
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mRNA from alignment at H-elongata_contig138541:73..789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138541.2691.1 ID=mRNA_H-elongata_contig138541.2691.1|Name=mRNA_H-elongata_contig138541.2691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig138541:73..789+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGGCACGGTAAAGGAGGGGCCCGGCGAGTTCTTCTCATCTCGCCT TCCCAATAAGAAGAGGAAGAAGACCCTGGTTGACGAGCTCCTTGTGGCTG ATGAGACCTTCAGGTGCAATGAGCGCCTTTCCCGTCGATTCACTCTCTCC TTGAGAAACACGGGCGTTTTTAGTGTGTGTGTTTTTTTACGGGGGGGGGG TGAAGGGGATGTTGCACCCGGTGCCGTTGTTGAAACGACTTCGCCATTCC CATGGGGCGCCTTACGCACGGATGGTGGGGGCGTATGGGCCGAACGCCTA CCCACGCTGAAACAGTTTAGTCCTTGACTGGGTGTATATATTTGTTTTAG AGAAATACTCTCGCGGGCAGGCGCAAGGAACGTGCGGTGTATAGCATGTC TCGCCGCTCACCACCCGCGGTGGTCTGCATTATCGAGTCACACCTGGCAA TTGCGCGGTTCGTAGGTCATGAAAACGCCAACACGTCGTATGGTAAAAAA AGGGAAAACGCCAACACATCTTGTTAAACTCCCTTTTGCCCCTCCATCCA TCCCTGTATGCCATCTTGACCTTACATCCTCCGTATTTGCGCGCTTTGGC AGGGCGTACGCCAAGAACCAATACAACTCCATTCAGGCCAAGAAGAAGTC GGGAGGAAAGACACACTACAAAGAGCTTATGCGCAAGAGGACAGGGGGGC TGAAGTGGAAGCCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig138541:73..789+

>mRNA_H-elongata_contig138541.2691.1 ID=mRNA_H-elongata_contig138541.2691.1|Name=mRNA_H-elongata_contig138541.2691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig138541:73..789+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGGCACGGTAAAGGAGGGGCCCGGCGAGTTCTTCTCATCTCGCCT
TCCCAATAAGAAGAGGAAGAAGACCCTGGTTGACGAGCTCCTTGTGGCTG
ATGAGACCTTCAGCAGGTCGGCACGGTAAAGGAGGGGCCCGGCGAGTTCT
TCTCATCTCGCCTTCCCAATAAGAAGAGGAAGAAGACCCTGGTTGACGAG
CTCCTTGTGGCTGATGAGACCTTCAGGGCGTACGCCAAGAACCAATACAA
CTCCATTCAGGCCAAGAAGAAGTCGGGAGGAAAGACACACTACAAAGAGC
TTATGCGCAAGAGGACAGGGGGGCTGAAGTGGAAGCCGTAGGGCGTACGC
CAAGAACCAATACAACTCCATTCAGGCCAAGAAGAAGTCGGGAGGAAAGA
CACACTACAAAGAGCTTATGCGCAAGAGGACAGGGGGGCTGAAGTGGAAG
CCGTAG
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