mRNA_H-elongata_contig13825.2676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13825.2676.1
Unique NamemRNA_H-elongata_contig13825.2676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: A0A6H5JPI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 5.300e-64
Identity = 116/194 (59.79%), Postives = 148/194 (76.29%), Query Frame = -2
Query:    7 VIPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPVTFNTRDGAVTLEKSKEWSVKSMRSMDEASVKKGMLKNFKETMEDGYATTVYRIDGEIVRGSAVFASWSTDTSIAPSELFYDVD 588
            +IPTS +NVAFSIALGVLLL++V+ PIVR C +RIR++ AW+SIE    V+VTKY IF+EALGDRG+WD AR+VTI+LA ++V TWGLELSLDLA+R+DGPVDLLNRPPP+ F T+   V    S +W V  +R+ +EA V+ G L + + T+ DG ATT YRI   I+RG+ VFASWS  +S   S LFYD+D
Sbjct:    4 IIPTSSDNVAFSIALGVLLLSVVLHPIVRWCFHRIRANVAWKSIEKQRPVEVTKYNIFSEALGDRGRWDMARVVTILLAAFHVSTWGLELSLDLALRTDGPVDLLNRPPPIVFRTQVVDVAHNFS-DWIV--IRN-EEAIVEGGSLDHIRGTLVDGNATTTYRIGESIIRGNTVFASWSPQSSRIASGLFYDID 193          
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.480e-21
Identity = 62/188 (32.98%), Postives = 95/188 (50.53%), Query Frame = -2
Query:   10 LLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPVTFNTRDGAVTLEKSKEWSVKSMRSMDEASVKKGMLKNFKE-TMEDGYATTVYRIDGE------------IVRGSAVFASWSTDTSIAPSELFYDV 534
            LL   + P +    +R+R+ RAWR I+   +V+VT Y + AE  G RG WD+AR + ++LA++++ +WGLELS+DLA   +G  DLLNRPPPV           +    W V ++  +D      G  +  +   +ED +A + Y I  +             + G  + ASW    S     LFYD+
Sbjct:   33 LLAYFLHPAIEWAFHRLRAYRAWRCIQKRQAVEVTSYNLMAEVFGGRGSWDSARNIAVILAVFSLASWGLELSMDLA-SLEGEADLLNRPPPVFLRPETNDTNTD---PWQVLTLSDIDPDY--NGNWRGLEHLNVEDTHANSRYYIVKDTRDYLGKTAKDTFINGEILVASWDDKPS-----LFYDI 209          
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.460e-17
Identity = 65/204 (31.86%), Postives = 95/204 (46.57%), Query Frame = -2
Query:   16 FVIPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPV---TFNTRDGAVTLEKSKEWSVKSMRSMD-EASVKKGMLKNFKETM--------EDGYATTVYRIDGEIVRGSAVFASWSTDTSIAPSELFY 591
            + +PT   +   +I L  + L  ++ P + A   R+R+  AWR IE    VDVT Y + +E    RG+WD AR++T++L  +++ +W LELS+DL    D P  LL +PPPV        +G V       W V ++  +D E       L N  ET          D Y     R D   + G  + ASWS +    P  L Y
Sbjct:   13 WTMPTGGVDSTLAIGLSFIFLAYILHPAIEAAYQRVRAYHAWRCIEKQQRVDVTTYLMLSELFAGRGRWDAARVITLLLLAFSLASWILELSMDLN-PVDNPAHLLTQPPPVFKWDAENDNGEVP------WHVLNLTEIDSEYQGNWWKLPNVFETFAKSRYYVQNDTYYAWSKRKD-RYIDGEIIVASWSPEEK--PDSLIY 206          
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: A0A6H5JST2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.350e-14
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  256 SIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPV 555
            +I+L  ++L  V+ P+V    +R+R+ RAWR+IE    V+VT Y    E L  RG WD  RIVT++L ++NV +W LEL LDL    +     L +PPPV
Sbjct:   36 AISLSFIVLAYVLHPLVIQAYHRVRAYRAWRAIENGRVVEVTAYSDREEILRGRGVWDATRIVTVLLVVFNVASWVLELMLDL-YSFENEAYPLTQPPPV 134          
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.870e-12
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query:  256 SIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPV 555
            +I L  + L   + P+V    +R+R+ RAWR+IE   +V+VT Y    E L  RG WD  RIVT++L ++NV +WGLEL LD     +     L +P PV
Sbjct:   36 AIGLSFIGLAYFLHPLVVWAYHRVRAYRAWRAIEKGRAVEVTAYSNREEILRGRGVWDATRIVTVLLVVFNVASWGLELMLD-QYSHENEACPLTQPSPV 134          
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.760e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = -2
Query:  307 IPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDL 585
            +PT   N    I L  + L  VV P  +    R+R+ RAWR IE    VDVT Y  + E LG+ G+ DTAR+V ++L L+ + +W L+LS+D+
Sbjct:   13 LPTGTMNTTLVIGLAYIFLAYVVHPATQYAYLRVRAYRAWRRIEEGERVDVTNYPTWMELLGNCGRRDTARVVALLLLLFALASWILDLSIDV 105          
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: A0A6H5JMP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.470e-11
Identity = 64/200 (32.00%), Postives = 87/200 (43.50%), Query Frame = -2
Query:   16 IPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPVTFNTRDGAVTLEKSKEWSVKSMRSMDEASVKKGMLKN----FKETMEDGYATTVYRI------DGEIVRGSAVFASWSTDTSIAPSELFY 585
            +PT   N    I L  + L  VV P  +    R+R+ RAWR IE    VDVT Y  + E LG   + DTAR+V ++L L+ +  W LELS+D    S  P      PPPV F    G  T      W V S+  +  A   +G   N    F+   +  Y    Y+           + G  + A+WS +T   P  L Y
Sbjct:   13 LPTGTMNTTLVIGLAYIFLAYVVHPTTKYAYLRVRAYRAWRRIEEGERVDVTDYPTWMELLGGCARRDTARVVALLLLLFALALWYLELSIDWFPVSV-PAYSQTLPPPV-FQWSAGNST---PTPWHVLSLNEI--APEYEGDWLNQPNVFETVAKSRYYVKEYKNYPWSEPKDRYINGDIIVANWSRNTK--PDNLVY 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JPI8_9PHAE5.300e-6459.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRU1_ECTSI7.480e-2132.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRU0_ECTSI2.460e-1731.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JST2_9PHAE6.350e-1443.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRT6_ECTSI5.870e-1241.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRT9_ECTSI7.760e-1240.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMP8_9PHAE1.470e-1132.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13825contigH-elongata_contig13825:2704..3442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size739
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13825.2676.1prot_H-elongata_contig13825.2676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13825 2834..3313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.398817-UTR-H-elongata_contig13825:2703..28331622929820.398817-UTR-H-elongata_contig13825:2703..2833Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13825 2704..2833 +
1691679170.443728-UTR-H-elongata_contig13825:2703..28331691679170.443728-UTR-H-elongata_contig13825:2703..2833Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13825 2704..2833 +
1622929820.4342568-UTR-H-elongata_contig13825:3313..34421622929820.4342568-UTR-H-elongata_contig13825:3313..3442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13825 3314..3442 +
1691679170.4599924-UTR-H-elongata_contig13825:3313..34421691679170.4599924-UTR-H-elongata_contig13825:3313..3442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13825 3314..3442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.4192128-CDS-H-elongata_contig13825:2833..33131622929820.4192128-CDS-H-elongata_contig13825:2833..3313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13825 2834..3313 +
1691679170.4514782-CDS-H-elongata_contig13825:2833..33131691679170.4514782-CDS-H-elongata_contig13825:2833..3313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13825 2834..3313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13825.2676.1

>prot_H-elongata_contig13825.2676.1 ID=prot_H-elongata_contig13825.2676.1|Name=mRNA_H-elongata_contig13825.2676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MVSLKFFNIPFFTEASSMLLMLFTLHSFDFSRVTAPSRVLNVTGGGRFRR
STGPSERIARSSDNSSPHVQTLYNARTMVTILAVSHFPRSPNASAKMPYL
VTSTDMAPSIDRHALSLRIRFKQARTMGCTTIVRSKTPKAMLKATFSCEV
GITNIGVTL*
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mRNA from alignment at H-elongata_contig13825:2704..3442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13825.2676.1 ID=mRNA_H-elongata_contig13825.2676.1|Name=mRNA_H-elongata_contig13825.2676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=739bp|location=Sequence derived from alignment at H-elongata_contig13825:2704..3442+ (Himanthalia elongata Himel1 dioecious)
CCCGTCGTCGACGTCGTAGAAAAGTTCGGAAGGAGCTATTGAGGTGTCCG TGGACCACGAGGCAAACACTGCGCTCCCACGCACGATCTCACCGTCGATA CGGTACACCGTGGTCGCGTAGCCGTCCTCCATGGTCTCCTTGAAGTTTTT CAACATCCCTTTTTTTACCGAGGCTTCGTCCATGCTCCTCATGCTCTTCA CGCTCCACTCTTTCGACTTTTCTAGGGTGACAGCCCCATCGCGCGTATTG AACGTCACTGGCGGCGGACGGTTTAGAAGGTCTACCGGGCCATCGGAACG GATAGCGAGGTCAAGTGACAACTCTAGTCCCCACGTACAAACATTGTACA ACGCCAGGACGATGGTGACAATCCTCGCTGTGTCCCACTTTCCTCGGTCT CCTAATGCTTCCGCAAAGATGCCGTACTTGGTGACGTCCACCGACATGGC CCCCTCGATCGACCGCCACGCCCTGTCGCTCCGAATCCGATTTAAGCAAG CCCGTACAATGGGTTGCACCACTATCGTCAGGAGCAAGACTCCCAAGGCG ATGCTAAAGGCAACATTTTCTTGCGAAGTTGGTATCACGAACATCGGCGT TACGCTATAGCCCGATTCTCTTTCTCGTGGACTCTTGACCGATTGATCAC CTCACAAGGATTCGCTTTAGCTGGCCTTCGACCAGCTTTTCCCACCAGTT TCTCCCCTCGAATGCTTGAATGCGTCTATACAGAGCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig13825:2704..3442+

>mRNA_H-elongata_contig13825.2676.1 ID=mRNA_H-elongata_contig13825.2676.1|Name=mRNA_H-elongata_contig13825.2676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig13825:2704..3442+ (Himanthalia elongata Himel1 dioecious)
ATGGTCTCCTTGAAGTTTTTCAACATCCCTTTTTTTACCGAGGCTTCGTC
CATGCTCCTCATGCTCTTCACGCTCCACTCTTTCGACTTTTCTAGGGTGA
CAGCCCCATCGCGCGTATTGAACGTCACTGGCGGCGGACGGTTTAGAAGG
TCTACCGGGCCATCGGAACGGATAGCGAGGTCAAGTGACAACTCTAGTCC
CCACGTACAAACATTGTACAACGCCAGGACGATGGTGACAATCCTCGCTG
TGTCCCACTTTCCTCGGTCTCCTAATGCTTCCGCAAAGATGCCGTACTTG
GTGACGTCCACCGACATGGCCCCCTCGATCGACCGCCACGCCCTGTCGCT
CCGAATCCGATTTAAGCAAGCCCGTACAATGGGTTGCACCACTATCGTCA
GGAGCAAGACTCCCAAGGCGATGCTAAAGGCAACATTTTCTTGCGAAGTT
GGTATCACGAACATCGGCGTTACGCTATAGATGGTCTCCTTGAAGTTTTT
CAACATCCCTTTTTTTACCGAGGCTTCGTCCATGCTCCTCATGCTCTTCA
CGCTCCACTCTTTCGACTTTTCTAGGGTGACAGCCCCATCGCGCGTATTG
AACGTCACTGGCGGCGGACGGTTTAGAAGGTCTACCGGGCCATCGGAACG
GATAGCGAGGTCAAGTGACAACTCTAGTCCCCACGTACAAACATTGTACA
ACGCCAGGACGATGGTGACAATCCTCGCTGTGTCCCACTTTCCTCGGTCT
CCTAATGCTTCCGCAAAGATGCCGTACTTGGTGACGTCCACCGACATGGC
CCCCTCGATCGACCGCCACGCCCTGTCGCTCCGAATCCGATTTAAGCAAG
CCCGTACAATGGGTTGCACCACTATCGTCAGGAGCAAGACTCCCAAGGCG
ATGCTAAAGGCAACATTTTCTTGCGAAGTTGGTATCACGAACATCGGCGT
TACGCTATAG
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