mRNA_H-elongata_contig13825.2676.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: A0A6H5JPI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI8_9PHAE) HSP 1 Score: 219 bits (558), Expect = 5.300e-64 Identity = 116/194 (59.79%), Postives = 148/194 (76.29%), Query Frame = -2
Query: 7 VIPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPVTFNTRDGAVTLEKSKEWSVKSMRSMDEASVKKGMLKNFKETMEDGYATTVYRIDGEIVRGSAVFASWSTDTSIAPSELFYDVD 588
+IPTS +NVAFSIALGVLLL++V+ PIVR C +RIR++ AW+SIE V+VTKY IF+EALGDRG+WD AR+VTI+LA ++V TWGLELSLDLA+R+DGPVDLLNRPPP+ F T+ V S +W V +R+ +EA V+ G L + + T+ DG ATT YRI I+RG+ VFASWS +S S LFYD+D
Sbjct: 4 IIPTSSDNVAFSIALGVLLLSVVLHPIVRWCFHRIRANVAWKSIEKQRPVEVTKYNIFSEALGDRGRWDMARVVTILLAAFHVSTWGLELSLDLALRTDGPVDLLNRPPPIVFRTQVVDVAHNFS-DWIV--IRN-EEAIVEGGSLDHIRGTLVDGNATTTYRIGESIIRGNTVFASWSPQSSRIASGLFYDID 193
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU1_ECTSI) HSP 1 Score: 101 bits (251), Expect = 7.480e-21 Identity = 62/188 (32.98%), Postives = 95/188 (50.53%), Query Frame = -2
Query: 10 LLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPVTFNTRDGAVTLEKSKEWSVKSMRSMDEASVKKGMLKNFKE-TMEDGYATTVYRIDGE------------IVRGSAVFASWSTDTSIAPSELFYDV 534
LL + P + +R+R+ RAWR I+ +V+VT Y + AE G RG WD+AR + ++LA++++ +WGLELS+DLA +G DLLNRPPPV + W V ++ +D G + + +ED +A + Y I + + G + ASW S LFYD+
Sbjct: 33 LLAYFLHPAIEWAFHRLRAYRAWRCIQKRQAVEVTSYNLMAEVFGGRGSWDSARNIAVILAVFSLASWGLELSMDLA-SLEGEADLLNRPPPVFLRPETNDTNTD---PWQVLTLSDIDPDY--NGNWRGLEHLNVEDTHANSRYYIVKDTRDYLGKTAKDTFINGEILVASWDDKPS-----LFYDI 209
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU0_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 2.460e-17 Identity = 65/204 (31.86%), Postives = 95/204 (46.57%), Query Frame = -2
Query: 16 FVIPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPV---TFNTRDGAVTLEKSKEWSVKSMRSMD-EASVKKGMLKNFKETM--------EDGYATTVYRIDGEIVRGSAVFASWSTDTSIAPSELFY 591
+ +PT + +I L + L ++ P + A R+R+ AWR IE VDVT Y + +E RG+WD AR++T++L +++ +W LELS+DL D P LL +PPPV +G V W V ++ +D E L N ET D Y R D + G + ASWS + P L Y
Sbjct: 13 WTMPTGGVDSTLAIGLSFIFLAYILHPAIEAAYQRVRAYHAWRCIEKQQRVDVTTYLMLSELFAGRGRWDAARVITLLLLAFSLASWILELSMDLN-PVDNPAHLLTQPPPVFKWDAENDNGEVP------WHVLNLTEIDSEYQGNWWKLPNVFETFAKSRYYVQNDTYYAWSKRKD-RYIDGEIIVASWSPEEK--PDSLIY 206
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: A0A6H5JST2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST2_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 6.350e-14 Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query: 256 SIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPV 555
+I+L ++L V+ P+V +R+R+ RAWR+IE V+VT Y E L RG WD RIVT++L ++NV +W LEL LDL + L +PPPV
Sbjct: 36 AISLSFIVLAYVLHPLVIQAYHRVRAYRAWRAIENGRVVEVTAYSDREEILRGRGVWDATRIVTVLLVVFNVASWVLELMLDL-YSFENEAYPLTQPPPV 134
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 5.870e-12 Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query: 256 SIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPV 555
+I L + L + P+V +R+R+ RAWR+IE +V+VT Y E L RG WD RIVT++L ++NV +WGLEL LD + L +P PV
Sbjct: 36 AIGLSFIGLAYFLHPLVVWAYHRVRAYRAWRAIEKGRAVEVTAYSNREEILRGRGVWDATRIVTVLLVVFNVASWGLELMLD-QYSHENEACPLTQPSPV 134
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: D7FRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT9_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 7.760e-12 Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = -2
Query: 307 IPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDL 585
+PT N I L + L VV P + R+R+ RAWR IE VDVT Y + E LG+ G+ DTAR+V ++L L+ + +W L+LS+D+
Sbjct: 13 LPTGTMNTTLVIGLAYIFLAYVVHPATQYAYLRVRAYRAWRRIEEGERVDVTNYPTWMELLGNCGRRDTARVVALLLLLFALASWILDLSIDV 105
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Match: A0A6H5JMP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP8_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.470e-11 Identity = 64/200 (32.00%), Postives = 87/200 (43.50%), Query Frame = -2
Query: 16 IPTSQENVAFSIALGVLLLTIVVQPIVRACLNRIRSDRAWRSIEGAMSVDVTKYGIFAEALGDRGKWDTARIVTIVLALYNVCTWGLELSLDLAIRSDGPVDLLNRPPPVTFNTRDGAVTLEKSKEWSVKSMRSMDEASVKKGMLKN----FKETMEDGYATTVYRI------DGEIVRGSAVFASWSTDTSIAPSELFY 585
+PT N I L + L VV P + R+R+ RAWR IE VDVT Y + E LG + DTAR+V ++L L+ + W LELS+D S P PPPV F G T W V S+ + A +G N F+ + Y Y+ + G + A+WS +T P L Y
Sbjct: 13 LPTGTMNTTLVIGLAYIFLAYVVHPTTKYAYLRVRAYRAWRRIEEGERVDVTDYPTWMELLGGCARRDTARVVALLLLLFALALWYLELSIDWFPVSV-PAYSQTLPPPV-FQWSAGNST---PTPWHVLSLNEI--APEYEGDWLNQPNVFETVAKSRYYVKEYKNYPWSEPKDRYINGDIIVANWSRNTK--PDNLVY 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13825.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13825.2676.1 >prot_H-elongata_contig13825.2676.1 ID=prot_H-elongata_contig13825.2676.1|Name=mRNA_H-elongata_contig13825.2676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp MVSLKFFNIPFFTEASSMLLMLFTLHSFDFSRVTAPSRVLNVTGGGRFRRback to top mRNA from alignment at H-elongata_contig13825:2704..3442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13825.2676.1 ID=mRNA_H-elongata_contig13825.2676.1|Name=mRNA_H-elongata_contig13825.2676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=739bp|location=Sequence derived from alignment at H-elongata_contig13825:2704..3442+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13825:2704..3442+ >mRNA_H-elongata_contig13825.2676.1 ID=mRNA_H-elongata_contig13825.2676.1|Name=mRNA_H-elongata_contig13825.2676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig13825:2704..3442+ (Himanthalia elongata Himel1 dioecious)back to top |