mRNA_H-elongata_contig13793.2659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13793.2659.1
Unique NamemRNA_H-elongata_contig13793.2659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: D8LC91_ECTSI (PRF3, plastid translation release factor RF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC91_ECTSI)

HSP 1 Score: 988 bits (2553), Expect = 0.000e+0
Identity = 489/559 (87.48%), Postives = 519/559 (92.84%), Query Frame = 1
Query:   31 PDAPSTPSKGGQWAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPELITQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTG-ASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK-KQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDV 1701
            P AP+T SKGGQWAA P EI+RRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSR+DQRKATSDWME+EKQRGISITSTVLSF+Y+GNHINLLDTPGHQ        DFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNK+DRP+L+PFELLDQIEREFGM+MAPVLWPIG+GE FKGVLDR+T TVHLFERA R  KATD+ EL L DP+LPELIT+EL EQL+ED EMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKP+SRR G A  I P YNEFTGF+FKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK KQV L+HAQQLFAQERETV  AYPGDVIGINNPGHFAIGDTIFTGS KIRFPGIPSFSPECF YMRNPNPSKYKNYRKGLDQLLDEGAVQ+LRER+DDGNGNPILAAVGTLQFDVVQHRMK EYGVDTILEPL GY TARWAEGGW++I+EATKAGKLFG+F AQD+FGRPVLLFRNEWKLAN+Q +LPQLEL+PWS PPD+
Sbjct:   80 PVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQ--------DFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTKTVHLFERAGRTKKATDMPELDLHDPKLPELITEELHEQLLEDVEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPSSRRMGNADVILPGYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKGKQVTLAHAQQLFAQERETVLAAYPGDVIGINNPGHFAIGDTIFTGSNKIRFPGIPSFSPECFAYMRNPNPSKYKNYRKGLDQLLDEGAVQMLRERSDDGNGNPILAAVGTLQFDVVQHRMKAEYGVDTILEPLSGYNTARWAEGGWESIDEATKAGKLFGVFTAQDRFGRPVLLFRNEWKLANVQGDLPQLELIPWSRPPDI 630          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A836C6V6_9STRA (PRF3, plastid translation release factor RF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V6_9STRA)

HSP 1 Score: 830 bits (2145), Expect = 3.090e-298
Identity = 409/554 (73.83%), Postives = 467/554 (84.30%), Query Frame = 1
Query:   58 GGQWAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPELITQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRR-----TGASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKKQVI-LSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDV 1701
            G QWAA   EI RRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWME+EKQRGISITSTVLSF+Y G  INLLDTPGHQ        DFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVC+LR LPIFTF NK+DRP+L+PFELLDQIE +FG++M PVLWPIG+G  F+GVLDR+T+ VHLFER  R  +A ++  L LDDP+LP  I + L+ QL ED E+L+ L+EPLDM +V  GEQSPMFFGSAM NFGVELFLKRFLT+GQ PA R        A  + P+Y EFTGF FKLQANLDPRHRDRLAY+RVVSGR+EKGM+V HSRMK + + L+ AQQLFAQ+RE+V  A+PGDVIG+NNPG FAIGDTI+TG+ ++ FPGIPSFSPECF Y+RNPNPS YKNY KGL QLLDEGAVQ+LRER+DDGNG+PILAAVGTLQFDVVQ+R+KDEYGV+T LE LPG+ TARW+  GWDA++ A   GKLFGIF A+D+FGRPVLLFRNEWKL  +  +LP+LELVPW+ PPD+
Sbjct:   69 GAQWAAPAAEIARRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMELEKQRGISITSTVLSFEYAGAQINLLDTPGHQ--------DFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCRLRGLPIFTFCNKLDRPSLSPFELLDQIEGDFGLQMVPVLWPIGDGPNFQGVLDRDTNLVHLFERGDRTGRAKEMGTLELDDPELPIAIGETLYNQLREDVEVLEGLIEPLDMAKVHAGEQSPMFFGSAMVNFGVELFLKRFLTLGQGPAPRSISSGGNAAEQLTPEYPEFTGFCFKLQANLDPRHRDRLAYIRVVSGRFEKGMRVSHSRMKGRTVNLTQAQQLFAQDRESVSEAFPGDVIGLNNPGVFAIGDTIYTGARRVAFPGIPSFSPECFAYIRNPNPSTYKNYNKGLTQLLDEGAVQLLRERSDDGNGSPILAAVGTLQFDVVQYRLKDEYGVETRLEALPGFNTARWSNAGWDAVDAAEADGKLFGIFQAKDRFGRPVLLFRNEWKLQQVMADLPELELVPWAAPPDI 614          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A6S9HEF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HEF4_HETAK)

HSP 1 Score: 802 bits (2071), Expect = 2.960e-287
Identity = 389/547 (71.12%), Postives = 465/547 (85.01%), Query Frame = 1
Query:   67 WAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPELI-TQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTGASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKKQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDVE 1704
            +AA   E+ RRRNFAIISHPDAGKTT+TEKLLLYGGAIQ+AGAV++RA QRKATSDWME+EKQRGISITSTVLSF+Y+G+ INLLDTPGHQ        DFSEDTYRTLAAADN+VMLVDAAKGLEPQT+KLFEVC+LR LPIFTF NKMDRPAL+PF+L+DQIE EFG++M PV+WPIG G+RFKGVL+R++  ++LFE+  R  KA +   + LDDP L  ++   +LF+QL+ED EMLD L EPLDM RVL GEQSPMFFGSAMTNFGVE+FL+RFLT+GQ P +R T A  +AP + EFTGF+FKLQANLDP+HRDRLAYVRV SG++EKGMKV HSR KK V LS AQ LFA +RETV+ AYPGD+IG+NNPG FAIGDTI+TG+  +++PGIPSFSPECF+Y+RNPNPSKYKNYRKGLDQL++EGAVQ+LR   DDGNGNPILAAVGTLQFDVVQ+R++DEYGV+TILEP+ GY  ARWAE  W+ I E T +GKLFG+F A+D++ RPVLLF+NEWKL ++ ++ P L+LVPW+  P+ E
Sbjct:   61 YAAPEKEVIRRRNFAIISHPDAGKTTMTEKLLLYGGAIQDAGAVKTRASQRKATSDWMELEKQRGISITSTVLSFEYDGHAINLLDTPGHQ--------DFSEDTYRTLAAADNSVMLVDAAKGLEPQTKKLFEVCRLRGLPIFTFCNKMDRPALSPFDLVDQIEGEFGLQMCPVVWPIGNGDRFKGVLERDSGLIYLFEKGQRGKKAEETT-VRLDDPGLRGILGDDQLFDQLMEDVEMLDGLFEPLDMARVLAGEQSPMFFGSAMTNFGVEVFLRRFLTLGQAPPARTTAAGPLAPTHPEFTGFVFKLQANLDPKHRDRLAYVRVCSGKFEKGMKVTHSRTKKNVNLSAAQALFASDRETVETAYPGDIIGLNNPGVFAIGDTIYTGNQPVKYPGIPSFSPECFSYIRNPNPSKYKNYRKGLDQLMEEGAVQLLRAYGDDGNGNPILAAVGTLQFDVVQYRLQDEYGVETILEPVGGYSIARWAENSWEEIKEETASGKLFGVFLAKDQYERPVLLFKNEWKLNSVVQDCPDLKLVPWAMAPEYE 598          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: B5YM78_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YM78_THAPS)

HSP 1 Score: 727 bits (1876), Expect = 2.420e-257
Identity = 366/568 (64.44%), Postives = 448/568 (78.87%), Query Frame = 1
Query:   73 AAPL-EINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDD-PQLPELITQ-ELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRT----------------------GASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK--KQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPP 1695
            +APL EINRRRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR + +QR   SD+MEME+QRGISI++TV+SFDY   HIN+LDTPGHQ        DFSEDTYR LAAADNAVML+DAAKGLEPQTRKLFEVC++R+LP+FTFVNKMDRPAL P+E++DQIE EFG+   P+LWPIG+GERFKGVLDR  + VHLF+RA R SK+ +V ++++ D   L E I   ELF++L+ED E+L+EL+ PLDMERV+ GEQSP+FFGSAMTNFGV+LFL +F  +G KP+ R                        G   I P+Y +FTGF+FK QANLDP+HRDRLAY+R+VSG ++KGMKV HSR K  K+  L+ AQ LF  +RE+V+VAYPGDVIGINNPG+FAIGDT+FTG++KI FPGIPSFSPE F Y+R+PNPS YK + KG+DQLL EGAVQ LR+RNDDG G  ILAAVG LQF+VVQ R+K EYGVD+ +EP+P +  ARWA+GGWDA+++A K GKLFG+   QD++ RPVLLFRN+WK A++ EE   LEL PWS PP
Sbjct:   56 SAPLTEINRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRMKGEQRGTQSDFMEMERQRGISISATVMSFDYNALHINILDTPGHQ--------DFSEDTYRALAAADNAVMLLDAAKGLEPQTRKLFEVCRMRQLPLFTFVNKMDRPALTPYEIMDQIEAEFGLETHPILWPIGDGERFKGVLDRLENMVHLFDRAERGSKS-EVRQVSMSDLDTLKECINDDELFDKLLEDQELLEELINPLDMERVIAGEQSPLFFGSAMTNFGVQLFLDKFCAMGTKPSGRLAKRMDEVKGKKAKEAASSIDDDEGDELIGPEYEDFTGFVFKTQANLDPKHRDRLAYIRIVSGSFQKGMKVGHSRSKPGKKYNLAQAQTLFGSDRESVEVAYPGDVIGINNPGNFAIGDTLFTGNSKIAFPGIPSFSPEVFGYIRSPNPSSYKAFAKGIDQLLAEGAVQALRQRNDDGGGPLILAAVGQLQFEVVQARLKSEYGVDSDMEPIP-FTLARWADGGWDAVDKADKDGKLFGLMILQDRWKRPVLLFRNDWKAASVTEEEKYLELKPWSKPP 613          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: B7G1B1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1B1_PHATC)

HSP 1 Score: 726 bits (1873), Expect = 1.310e-256
Identity = 355/563 (63.06%), Postives = 447/563 (79.40%), Query Frame = 1
Query:   46 TPSKGGQWAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPE--LITQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTGAST------IAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK--KQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDVE 1704
            TP     + A  +EI+RRRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR +A+QR   SD+MEME++RGISI+STV++F+Y+   I L+DTPGHQ        DFSEDTYR LAAADNA+ML+DAAKGLEPQTRKLFEVC++R LP+FTF NKMDRPAL+P+E++DQIE EFG+   P+LWPIG+G+RFKGVLDR T+ VHL+++A ++     V E+ L+D    +  +  +ELF +L+EDAE+L+EL+ PLDMERV+ GEQSP+FFGSAMTNFGV+LFL +F ++G KP  R     +      I P++ EFTGFIFK QANLDP+HRDRLAYVRVVSGRYEKGMKV HSR K  K+  L+ AQ LF  +R +++VAYPGDVIGINNPG+FAIGDT+FTG  ++ FPGIPSFSPE F Y+R+PNPS YK++RKG+DQLLDEGAVQ LR+RNDDG G  +LAAVG LQF+VVQ R+K+EY V++I+EPL  Y  ARW +GGW+A+ +A   GKLFGI   QD++GRPVLLFRN+WK A++ EE   L+L PWS PP ++
Sbjct:   80 TPPVSTNYQAPQIEIDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRATQSDFMEMEQERGISISSTVMNFEYQDFGIRLMDTPGHQ--------DFSEDTYRALAAADNALMLLDAAKGLEPQTRKLFEVCRMRRLPLFTFCNKMDRPALSPYEIMDQIEDEFGLETHPILWPIGDGDRFKGVLDRTTNVVHLYQKAEKRGGKAGVQEVPLEDTVTLKATIDDEELFHKLLEDAELLEELINPLDMERVMKGEQSPLFFGSAMTNFGVQLFLDKFCSMGTKPMGRMADTKSENEEEMIGPNHEEFTGFIFKTQANLDPKHRDRLAYVRVVSGRYEKGMKVSHSRSKSGKKYNLAQAQALFGSDRSSIEVAYPGDVIGINNPGNFAIGDTLFTGGARVAFPGIPSFSPEKFAYIRSPNPSDYKSFRKGIDQLLDEGAVQALRQRNDDGGGPLMLAAVGQLQFEVVQARLKNEYNVESIMEPL-NYSLARWVDGGWEAVEKADADGKLFGIMICQDRWGRPVLLFRNDWKAASVAEEEKYLDLKPWSTPPIID 633          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A7S2L692_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L692_9STRA)

HSP 1 Score: 718 bits (1853), Expect = 8.990e-254
Identity = 363/571 (63.57%), Postives = 442/571 (77.41%), Query Frame = 1
Query:   67 WAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQL--PELITQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASR----------RTGAST-----------IAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK--KQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDVE 1704
            +AA P EINRRRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR + +QR   SD+MEMEKQRGISI+STV+SF+Y    +N+LDTPGHQ        DFSEDTYR LAAADNAVML+DAAKGLEPQTRKLFEV ++R LP+FTFVNKMDRPAL+P E++DQIE+EFG+   P++WPIG+GERFKGVLDR  + VHLF +  RKSKA +V  + + D +     +  QELF++L+ED E+LDEL+ PLDM+RV+ G+QSP+FFGSAMTNFGV+LFL +F  +G KP  R          + GA +           + PD+ EFTGF+FK QANLDP+HRDRLAY+R+VSG ++KGMKV HSR K  K+  L+ AQ LF  +RE+V+VAYPGDVIGINNPG FAIGDT++TG+ K+ FPGIPSFSPE F Y+RNPNPS YK++ KG+DQLL EGAVQ LR+RNDDG G  ILAAVG LQF+VVQ R+K EY VD+ LEP+ GY  ARWAEGGWDA+++A   GKLFGI   QD++GRPVLLFRN+WK   + EE   LEL PWS PP  E
Sbjct:   61 FAAPPKEINRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRMKGEQRATQSDFMEMEKQRGISISSTVMSFEYNDLCVNILDTPGHQ--------DFSEDTYRALAAADNAVMLLDAAKGLEPQTRKLFEVTRMRNLPLFTFVNKMDRPALDPSEIMDQIEQEFGLETYPIVWPIGDGERFKGVLDRMDNVVHLFGKGDRKSKA-EVETVPMSDLETLKARIDDQELFDKLMEDIEILDELIAPLDMDRVIAGDQSPLFFGSAMTNFGVQLFLDKFCDMGVKPLGRLAKVVEEGKGKKGAQSKLDQDDEPNDLVNPDFGEFTGFVFKTQANLDPKHRDRLAYIRIVSGAFQKGMKVGHSRSKPGKKFNLAQAQTLFGSDRESVEVAYPGDVIGINNPGDFAIGDTLYTGNQKVAFPGIPSFSPEIFAYIRNPNPSSYKSFTKGIDQLLAEGAVQALRQRNDDGGGPLILAAVGQLQFEVVQARLKGEYNVDSDLEPI-GYTLARWAEGGWDAVDKADADGKLFGIMIVQDRWGRPVLLFRNDWKATGVAEEEKYLELKPWSKPPMFE 621          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A7S2FZH2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZH2_9STRA)

HSP 1 Score: 716 bits (1849), Expect = 2.460e-253
Identity = 361/556 (64.93%), Postives = 431/556 (77.52%), Query Frame = 1
Query:   85 EINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQ-LPELITQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTGASTIAP---------------DYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKKQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHF-AIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDV 1701
            EI RRRN AII+HPDAGKTTLTEKLLLYGGA+Q+AGAVR+RADQR ATSDWME+EKQRGISITSTVLSFDY G HINLLDTPGHQ        DFSEDTYRTLAA+DNAV L+DAAKGLEPQTRKL EV KL  +P+FTF NKMDRPAL+PFEL+DQIE +F +   PV+WPIG GE F+G+L+RET TVHLFE+  R  KA D+A + LDD + L +L+  +++ QL+EDAEMLD L+EPLD++ V+ G Q+PMFFGSAM NFGVELFL+ FL  G +P  R        P               D +EF+ F+FKLQAN+DP+HRDRLAY+RVVSGRY KGMKV HSR K+Q+ L+ AQ LF  +R  V  A+PGDVIGINNPG   +IGDT++TGS +I FPGIPSFSPE F Y+RNP+P KYKNYRKGL +L++EGAVQ+L +R DD   NPILAAVG LQF+VVQHRM  EYG + +LEP+  Y +ARWAEGGW A++ A K GKLFGIF AQD++ RPVLLFRNEWK+  +++    L LVP S PPD+
Sbjct:   63 EIERRRNLAIIAHPDAGKTTLTEKLLLYGGAVQQAGAVRTRADQRAATSDWMELEKQRGISITSTVLSFDYLGKHINLLDTPGHQ--------DFSEDTYRTLAASDNAVTLIDAAKGLEPQTRKLLEVTKLSGIPVFTFCNKMDRPALSPFELIDQIEADFKLTCVPVVWPIGMGEEFRGLLERETKTVHLFEKGIRTGKAVDMATVPLDDAETLEDLLGADVYAQLLEDAEMLDGLIEPLDLDEVMDGNQTPMFFGSAMNNFGVELFLRFFLQWGSRPQKRLISPPXXXPKATDDVIVEEEFIEADDSEFSAFVFKLQANIDPKHRDRLAYLRVVSGRYNKGMKVSHSRSKRQITLASAQSLFGSDRAAVTEAFPGDVIGINNPGGLLSIGDTLYTGSQRIAFPGIPSFSPEVFAYVRNPDPGKYKNYRKGLKELMEEGAVQMLNDRGDDTENNPILAAVGQLQFEVVQHRMASEYGCEIVLEPM-SYSSARWAEGGWAAVDAAKKDGKLFGIFNAQDRWKRPVLLFRNEWKVDQLKDT--DLALVPCSTPPDI 607          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A1Z5KM76_FISSO (Peptide chain release factor 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM76_FISSO)

HSP 1 Score: 712 bits (1837), Expect = 6.930e-252
Identity = 349/556 (62.77%), Postives = 441/556 (79.32%), Query Frame = 1
Query:   43 STPSKGGQWAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPELI-TQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTGAST-IAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKKQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDVE 1704
            S+ S    + A   EI +RRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR +A+QR   SD++ ME++RGISI+STVL+FDY+   I LLDTPGHQ        DFSEDTYR LAA D A+ML+DAAKGLEPQTRKLFEVC+LR +P+FTFVNKMDRPAL+P++++DQIE+EFG+   P+LWPIG+G+RFKGVLDR T+TVHL+++A ++    +  E+ LDD QL +LI   EL+++L+EDAE+L+E++ PLDMERV+ G+QSP+FFGSAMTNFGV+LFL  F  +G +P  R T     I PDY EFTGF+FK QANLDP+HRDRLAYVR+VSG+YEKGMKV HSR K+Q  L+ AQ LF  +R +V  A+PGDVIGINNPG FAIGDT+++G++ I FPGIPSFSPE F Y+R PNPS YK+++KG+DQLL EGAVQ LR+RND+ NG  +LAAVG LQF+VVQ R+  EY VD+ +EPL GY  ARW +GGW+A+ +A K GKLFGI   QD++ RPVLLFRN+WK A++ EE   L+L PWS PP ++
Sbjct:   40 SSESSSSTYQAPLSEITKRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRHKAEQRATQSDFLAMEQERGISISSTVLNFDYQDYTIRLLDTPGHQ--------DFSEDTYRALAATDQALMLMDAAKGLEPQTRKLFEVCQLRSIPLFTFVNKMDRPALSPYDIMDQIEQEFGLEPHPILWPIGDGDRFKGVLDRTTNTVHLYQKAEKRGAKAEATEVALDDEQLKDLIGDSELYDKLMEDAELLNEMIPPLDMERVMIGKQSPLFFGSAMTNFGVQLFLDHFCRMGTEPLGRETSKDILITPDYGEFTGFVFKTQANLDPKHRDRLAYVRIVSGKYEKGMKVNHSRSKRQYNLAQAQALFGSDRTSVDEAFPGDVIGINNPGSFAIGDTLYSGNSPIAFPGIPSFSPEKFAYIRAPNPSDYKSFKKGIDQLLAEGAVQALRQRNDE-NGPLLLAAVGQLQFEVVQARLLSEYKVDSKMEPL-GYSLARWVDGGWEAVEKADKDGKLFGIMIVQDQWKRPVLLFRNDWKAASLAEEEKYLQLKPWSAPPAMD 585          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A6H5KH59_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH59_9PHAE)

HSP 1 Score: 703 bits (1814), Expect = 1.420e-250
Identity = 367/470 (78.09%), Postives = 388/470 (82.55%), Query Frame = 1
Query:   31 PDAPSTPSKGGQWAAAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPELITQELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTGASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK-KQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFD 1437
            P AP+T SKGGQWAA P EI+RRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSR+DQRKATSDWME+EKQRGISITSTVLSF+Y GNHINLLDTPGHQ        DFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNK+DRP+L+PFELLDQIEREFGM+MAPVLWPIG+GE FKGVLDR+T+TVHLFERA+R  KATD+ E+ L DP+LPELIT+EL EQL+ED EMLDELVEPLDMERVL GEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRR G                                             VQHSRMK KQV L+HAQQLFAQERETV  AYPGDVIGINNPGHFAIGDTIFTGS KIRFPGIPSFSPECF YMRNPNPSKYKNYRKGLDQ+L        RER+DDGNGNPILAAVGTLQFD
Sbjct:   36 PVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYAGNHINLLDTPGHQ--------DFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTNTVHLFERAARTKKATDMPEIDLHDPKLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMG---------------------------------------------VQHSRMKGKQVTLAHAQQLFAQERETVLAAYPGDVIGINNPGHFAIGDTIFTGSNKIRFPGIPSFSPECFAYMRNPNPSKYKNYRKGLDQML--------RERSDDGNGNPILAAVGTLQFD 444          
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Match: A0A7S4QFI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QFI9_9STRA)

HSP 1 Score: 704 bits (1818), Expect = 1.980e-248
Identity = 349/570 (61.23%), Postives = 436/570 (76.49%), Query Frame = 1
Query:   73 AAPLEINRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYEGNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWPIGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDP-QLPELITQ-ELFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRTG----------------------ASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMK--KQVILSHAQQLFAQERETVQVAYPGDVIGINNPGHFAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLDEGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPGYKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQEELPQLELVPWSHPPDVE 1704
            A   EI+RRRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR +A+QR   SD+MEMEK+RGISI+STV++FDY+G  +N+LDTPGHQ        DFSEDTYR LAAADNAVML+DAAKGLEPQTRKLFEVC++R+LP+FTFVNKMDRPAL P+E++DQIE EFG+   P+LWPIG+G+RFKGVLDR T+ VHL+ + +++    +V E+ L+D  +L ELI   EL            EL+ PLD+ER++  +QSP+FFGSAMTNFGV+LFL +F  +G KP  R                            + P++ EFTGF+FK QANLDP+HRDRLAYVR+VSG YEKGMKV HSR K  K+  L+ AQ LF   R++++VAYPGDVIGINNPG+FAIGDT+FTG+ K+ FPGIPSFSPE F Y+RNPNPS YK+++KG+DQLL EGAVQ LR+RNDDG G  ILAAVG LQF+VVQ R+++EYGV+++LEP+ GY  ARWA+GGWDA+++A K GKLFGI   QD++ RPVLLFRN+WK A++  E   LEL+PWS PP  +
Sbjct:   62 APQTEIDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRATASDFMEMEKERGISISSTVMNFDYQGLRVNILDTPGHQ--------DFSEDTYRALAAADNAVMLLDAAKGLEPQTRKLFEVCRMRQLPLFTFVNKMDRPALTPYEIMDQIEEEFGLETHPILWPIGDGDRFKGVLDRLTNIVHLYSKPTKRGAKAEVVEVPLEDEAKLKELIDDDELXXXXXXXXXXXVELMNPLDLERIMAADQSPLFFGSAMTNFGVQLFLDKFCDMGTKPLGRNASKRADGXXXXXXXXXXXXXXXXXTELVPPEHEEFTGFVFKTQANLDPKHRDRLAYVRIVSGTYEKGMKVGHSRSKASKKYNLAQAQALFGNSRDSIEVAYPGDVIGINNPGNFAIGDTLFTGNAKVAFPGIPSFSPEKFAYIRNPNPSTYKSFQKGIDQLLAEGAVQALRQRNDDGGGPLILAAVGQLQFEVVQARLENEYGVESVLEPM-GYTMARWADGGWDAVDKADKDGKLFGIMIVQDRWKRPVLLFRNDWKAASVAAEEKYLELLPWSRPPSFD 622          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13793.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC91_ECTSI0.000e+087.48PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A836C6V6_9STRA3.090e-29873.83PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A6S9HEF4_HETAK2.960e-28771.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B5YM78_THAPS2.420e-25764.44Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
B7G1B1_PHATC1.310e-25663.06Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2L692_9STRA8.990e-25463.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2FZH2_9STRA2.460e-25364.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KM76_FISSO6.930e-25262.77Peptide chain release factor 3 n=2 Tax=Fistulifera... [more]
A0A6H5KH59_9PHAE1.420e-25078.09Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4QFI9_9STRA1.980e-24861.23Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13793contigH-elongata_contig13793:1388..6130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score987.6
Seed ortholog evalue2.4e-285
Seed eggNOG ortholog2880.D8LC91
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0480@1,KOG0465@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPRF3, plastid translation release factor RF3
Ec32 orthologEc-14_005650.1
Exons12
Model size1707
Cds size1707
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13793.2659.1prot_H-elongata_contig13793.2659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13793 1388..6130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.8837419-CDS-H-elongata_contig13793:1387..15731622929818.8837419-CDS-H-elongata_contig13793:1387..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 1388..1573 +
1691679169.8497717-CDS-H-elongata_contig13793:1387..15731691679169.8497717-CDS-H-elongata_contig13793:1387..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 1388..1573 +
1622929818.8968387-CDS-H-elongata_contig13793:1938..21151622929818.8968387-CDS-H-elongata_contig13793:1938..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 1939..2115 +
1691679169.8706007-CDS-H-elongata_contig13793:1938..21151691679169.8706007-CDS-H-elongata_contig13793:1938..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 1939..2115 +
1622929818.915049-CDS-H-elongata_contig13793:2435..25401622929818.915049-CDS-H-elongata_contig13793:2435..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 2436..2540 +
1691679169.8805168-CDS-H-elongata_contig13793:2435..25401691679169.8805168-CDS-H-elongata_contig13793:2435..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 2436..2540 +
1622929818.9262047-CDS-H-elongata_contig13793:2728..28841622929818.9262047-CDS-H-elongata_contig13793:2728..2884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 2729..2884 +
1691679169.887725-CDS-H-elongata_contig13793:2728..28841691679169.887725-CDS-H-elongata_contig13793:2728..2884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 2729..2884 +
1622929818.94406-CDS-H-elongata_contig13793:3295..34621622929818.94406-CDS-H-elongata_contig13793:3295..3462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 3296..3462 +
1691679169.8958871-CDS-H-elongata_contig13793:3295..34621691679169.8958871-CDS-H-elongata_contig13793:3295..3462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 3296..3462 +
1622929818.9606762-CDS-H-elongata_contig13793:3617..37651622929818.9606762-CDS-H-elongata_contig13793:3617..3765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 3618..3765 +
1691679169.9040453-CDS-H-elongata_contig13793:3617..37651691679169.9040453-CDS-H-elongata_contig13793:3617..3765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 3618..3765 +
1622929818.9754298-CDS-H-elongata_contig13793:4213..43481622929818.9754298-CDS-H-elongata_contig13793:4213..4348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 4214..4348 +
1691679169.9122686-CDS-H-elongata_contig13793:4213..43481691679169.9122686-CDS-H-elongata_contig13793:4213..4348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 4214..4348 +
1622929818.9951088-CDS-H-elongata_contig13793:4569..46501622929818.9951088-CDS-H-elongata_contig13793:4569..4650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 4570..4650 +
1691679169.9228368-CDS-H-elongata_contig13793:4569..46501691679169.9228368-CDS-H-elongata_contig13793:4569..4650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 4570..4650 +
1622929819.0104735-CDS-H-elongata_contig13793:4925..51111622929819.0104735-CDS-H-elongata_contig13793:4925..5111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 4926..5111 +
1691679169.930215-CDS-H-elongata_contig13793:4925..51111691679169.930215-CDS-H-elongata_contig13793:4925..5111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 4926..5111 +
1622929819.0275776-CDS-H-elongata_contig13793:5314..54111622929819.0275776-CDS-H-elongata_contig13793:5314..5411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 5315..5411 +
1691679169.9454832-CDS-H-elongata_contig13793:5314..54111691679169.9454832-CDS-H-elongata_contig13793:5314..5411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 5315..5411 +
1622929819.040634-CDS-H-elongata_contig13793:5658..57741622929819.040634-CDS-H-elongata_contig13793:5658..5774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 5659..5774 +
1691679169.9555352-CDS-H-elongata_contig13793:5658..57741691679169.9555352-CDS-H-elongata_contig13793:5658..5774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 5659..5774 +
1622929819.0559175-CDS-H-elongata_contig13793:5977..61301622929819.0559175-CDS-H-elongata_contig13793:5977..6130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 5978..6130 +
1691679169.9650571-CDS-H-elongata_contig13793:5977..61301691679169.9650571-CDS-H-elongata_contig13793:5977..6130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13793 5978..6130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13793.2659.1

>prot_H-elongata_contig13793.2659.1 ID=prot_H-elongata_contig13793.2659.1|Name=mRNA_H-elongata_contig13793.2659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=569bp
MATVQVCDTEPDAPSTPSKGGQWAAAPLEINRRRNFAIISHPDAGKTTLT
EKLLLYGGAIQEAGAVRSRADQRKATSDWMEMEKQRGISITSTVLSFDYE
GNHINLLDTPGHQASTTAAAPDFSEDTYRTLAAADNAVMLVDAAKGLEPQ
TRKLFEVCKLRELPIFTFVNKMDRPALNPFELLDQIEREFGMRMAPVLWP
IGEGERFKGVLDRETSTVHLFERASRKSKATDVAELTLDDPQLPELITQE
LFEQLIEDAEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRF
LTIGQKPASRRTGASTIAPDYNEFTGFIFKLQANLDPRHRDRLAYVRVVS
GRYEKGMKVQHSRMKKQVILSHAQQLFAQERETVQVAYPGDVIGINNPGH
FAIGDTIFTGSTKIRFPGIPSFSPECFTYMRNPNPSKYKNYRKGLDQLLD
EGAVQVLRERNDDGNGNPILAAVGTLQFDVVQHRMKDEYGVDTILEPLPG
YKTARWAEGGWDAINEATKAGKLFGIFFAQDKFGRPVLLFRNEWKLANIQ
EELPQLELVPWSHPPDVE*
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mRNA from alignment at H-elongata_contig13793:1388..6130+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13793.2659.1 ID=mRNA_H-elongata_contig13793.2659.1|Name=mRNA_H-elongata_contig13793.2659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4743bp|location=Sequence derived from alignment at H-elongata_contig13793:1388..6130+ (Himanthalia elongata Himel1 dioecious)
ATGGCGACCGTTCAGGTGTGTGATACCGAACCAGATGCGCCAAGTACGCC GAGCAAGGGAGGACAGTGGGCGGCGGCACCCCTCGAGATCAACAGGCGTC GAAATTTTGCTATAATTTCTCATCCCGATGCCGGAAAAACAACACTGACA GAGAAGCTTTTGCTTTACGGTGGAGCTATCCAAGAGGTACGTTCGATTGT TTCAGGTGACTCACCGTTGGTCAAGGATGTATAGACCCAGTCTACAGTAT ACTTCGATGATGCCCGAGGATATTGGATATTACAGTATCATTAGTCATCC TCATCCTCAGCCGTACAAGTAGTAAGAGAGTAACCGCAGATGGTAAGGCA TCGCAAGTTAAATGGTACAATCAAAATTGACTGCATAACTATCGCTCATG GAATCTTCCATGAAGTCTCATACGGCGGCAATCTGTTAATAGAAATGTCG TATTATGATGTCGCTGCCTCGATCCAAGAATGATTCAGCCCTCTATCCCT CCCTCTCTCGACGATGATGATGATGGTACTCTTTCATGATGTCGTGCACA GGCAGGAGCTGTTCGGTCACGAGCTGATCAACGTAAAGCAACATCAGACT GGATGGAGATGGAGAAGCAGAGAGGCATATCTATTACCTCCACTGTTCTA TCCTTCGACTATGAAGGGAACCACATCAATTTATTGGATACCCCAGGTCA TCAGGCCAGTACCACGGCTGCAGCTCCTGTTGTCTAGGACGTTTGGTGAT TGTAATTTGGTGACCGTGAGCTGTGTCGAACCCTGTCCTTTCGTGCGGCG TCCGATTCCGTGATCAACCCTTATGTTAAGGTCACCCTCGCGCAGAACAA GTTGGGGAGTTCTGTAGACTAAGGCACTACGATAAACAGCTAATATCTTG TTGTGGATTTAAGAATGCGTCAGTATCGATATTTTGACGTGTGAGCATGA CCTAAAACTGGCTTTTGAGATCCTTCTAGATATCTCGGAAGGCAAACATT AAATCTGGCGTCTTCGACCACACACTCATTCGCTGCGTTTTCACACAGGA TTTCTCTGAAGACACATACCGCACCCTCGCTGCCGCTGACAACGCGGTCA TGCTCGTCGATGCCGCCAAGGGACTAGAGCCGCAAACGCGCAAACTGTTC GAGGTATTTTACCGGTCAAATTTGAATTCTTGGACACGATGAAGTCATAC TTTCCCGTGAGTATTTCATGCGTGTTTGGCGTCGATGGGATGTGATGGGA TGGCGTTTCGTCTATACCTCTCGGTCCTCTAATTCGATTACTCAGTCGCC AAGTTGATTACTCACGATGTGCAGCTTCTACATCCCCTCAGGTCTGCAAG CTCAGGGAACTCCCTATTTTTACGTTCGTCAACAAGATGGACCGCCCCGC GCTTAATCCTTTCGAGCTTCTGGATCAGATTGAGCGAGAGTTTGGCATGC GCATGGCCCCCGTGCTTTGGCCGATCGGAGAGGGAGAGCGGTTCAAGGTG TGCTTGAAGCAGCGTTGTTATATCGCAGTCGTTTTCTAACCGTGAGGTCA GCCAAACGTTTTATCACTAAATGGTGTAATTTTTCCCCACATGATATGTT TGATATCCTACGATGAAGCACGCGTCCGCAATGGGCAAAACGAAACCATA TTCCTGCTGCTGAAAGCTGTTTCACGTCATGAAGGGGAATGCTGCTAAAG CCGGGGGAGGTAACGCGTGGAATCTTACCCAGCTTCAAGTTTGATCACGG CGCGTCGGATAGAGCTATTATTGTTTGCGTGTGAAGGAGGGCAGAAGCTC AACCACGGGAAAAACCTGCGTGATGTGGTAACTCTCATGTACGTTGCTTC TGGTTTGGGGACTATGCAGGCACCAGTACTTATTTCTCGCAATCTGATTG AAAAACAGGGAGTACTTGATCGGGAAACAAGCACTGTTCATCTTTTCGAG CGGGCCAGCCGCAAATCGAAAGCGACAGATGTTGCTGAGCTGACCCTGGA CGACCCACAGCTGCCGGAGCTGATAACGCAAGAACTCTTTGAACAGTTGA TAGAGGATGCGGAGATGCTCGACGAGTAAGTACGTGTCTCCTCTTGTGGT GACTGAAATCCTCGAGTATTTCAATCATGTTCGTATTCGTCTAGCATCCA ATCTGATGTTGCTGTTGCTCAATAACGCTTCACGATGGTGACACATTGAC CATCGGCCGTGATGCCTAAACAACTGGTAGGCTCGTGGAACCTCTCGACA TGGAGCGCGTCCTCACCGGCGAACAAAGTCCCATGTTTTTTGGGTCGGCC ATGACCAACTTTGGCGTTGAGCTCTTTCTCAAGCGGTTCCTCACCATAGG ACAAAAACCTGCATCCAGACGAACAGGGGTGAGCTGACCTTCCGGCAGCG AATTCTCCGCTTCCTGCCCCGTTCCAGTCTCTTGAATCTCTTATACCACA CACTATTAATAGTAACACAAGAAAGCTAACACTTCCCCCAGATATGAGTG TTCGCGATGATTTTTTTCGGTAACTAGGTACAGTAAATACGGAAACAAGC AACAACTACAATCACAGCGGATTTCGGATTTCGGAAGTGTTGCTATTGCA CAATTCGCATTAATTAATGCTATATGTTGTAGGTACCATGACACCCAAGG TACGCAGTATCTTGACTTTACATATATATATATATATATATAAGCTGTAA TCGCTGTTATCAACGGCTAGCGTTCCGAGTCACCCACCAAATCGTTTCCT CCTAAAATATGACAAGTACTTGTGGAGGCGACGCGTGCGATTTACCGTGG CCGGACCGCCTATCTGACTCTGACAGGCGTCTACAATCGCTCCAGACTAC AATGAGTTTACGGGCTTTATTTTCAAGCTCCAAGCTAACCTCGATCCGCG TCACCGGGACCGCCTGGCGTACGTTCGAGTGGTTTCGGGTCGATACGAAA AGGGGATGAAGGTGATTAACTGCGTGCCAAAGCTCGCGTAACTTCAAGGG CCACCCTTTTGTGGGGCTGCCCGCTGCACCTTCGTGACCACCCCAGCCAT TAAACAGTATCGCCACTTTTATGCCCAGCTGGTCCGTTTCAACCTCGCGA ATCTTTTATGGCTGAACACCGTGAAGCTACGTACCCACCGGTCGAATGGG TGTACTTCATGTCTCTCTTCTGAGATGCCCAGGTGCAACACAGTCGAATG AAGAAGCAAGTTATCCTCTCCCATGCTCAGCAACTGTTCGCACAGGAGCG GGAGACGGTGCAGGTAATTATTCTGATCTACGGAGATTTCAATGTATTGT AGAGTGGGTAGTGGCGTTCATCGTCCATGGGCCGTTCATCAGTCGGGCAA TCATGCACGTAGCACGCGGAGATGGTACCAATGCTCAATTTTTCCGAAGA GAGTCAGTTGGATATACGTTGTGCCTAGTGTACCCTGACCCGCGCGAGAT GCTACGACGAGGTGGTCGCCTCAAGTAAGGTGACATGCCTCGCCATTTCG AGACTTTTTGATGTTTTGAGGTTGCGTTCCATATGCAGGTGGCTTACCCA GGAGACGTGATCGGAATCAACAACCCTGGCCACTTCGCCATCGGCGATAC CATCTTCACAGGTAGCACAAAAATACGCTTCCCTGGTATCCCATCCTTCA GCCCGGAATGCTTCACCTACATGAGAAATCCCAACCCCAGCAAATACAAG AACTACAGGAAAGGTCTCGACCAGGTGATTTAAGACTCTGGTAGTGACAG TAAACAAACCTCGAAAATCATTCGCTGGAGACTTTCCAGTATTTGTGGGG TGTAATCCGGTATATTCCCAGACATTCCGAGGTCTCCTTGGCACTTGAAG CTATCGCTATAAGAATGAGATGTGTATTTGGCCGGACATATTGGGTGTGT ATCCCTTTAACGTGTTTTCGCACGCAGCTGCTCGACGAAGGCGCCGTTCA AGTTCTGCGCGAGCGAAACGATGACGGAAATGGCAACCCTATCTTGGCTG CGGTCGGCACCCTCCAATTCGACGGTAACTTAGTTTCCCACTCGGAAGCT TGCCACAAGTTATCACTTCTCAGCTCTCGAGTTCCTTCCAGTCAATTTTT GTCACATACCGTCGTAGCAAATAGCTAGTAATATATTAGCAGTATAATAG TAGCGGTATGACTACCCGTACCGTACCGCATGAACAAACCATAGGCAGCT AGCTGACAGTTGTACCCCGTGTAATTATGTTTCGATCCCCCGGAATTACA CCTCCAACACGTTTTCCACAGTTGTACAGCACCGGATGAAGGACGAGTAC GGCGTAGACACGATCCTGGAACCATTGCCCGGATATAAGACGGCGCGCTG GGCCGAGGGGGGCTGGGATGCAATCAACGAGGCAACGGTACGTTAAGCGT TGCATCATTTTGAGGGGTGTTATTTTCTAGATCACTCAGGTGACTCATGT GGCCGATCCTTTTTATTCGATAGTGTGATTTTTCTTCTGCGCTGCGTGAA GCCGGCATAGATAGATAGATAGATAGCCTAGGGTAATCTTTCACTTTTCA TTTTCCGCTTGTGCGATGCTCAAATTTTCCTTCCGTGCAGAAAGCGGGAA AGCTATTCGGAATATTTTTCGCACAGGACAAGTTTGGGCGCCCTGTTCTC CTTTTCCGCAACGAGTGGAAGCTAGCCAACATTCAGGAGGAGCTCCCTCA GCTTGAGCTCGTGCCTTGGTCGCACCCTCCTGACGTGGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13793:1388..6130+

>mRNA_H-elongata_contig13793.2659.1 ID=mRNA_H-elongata_contig13793.2659.1|Name=mRNA_H-elongata_contig13793.2659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3414bp|location=Sequence derived from alignment at H-elongata_contig13793:1388..6130+ (Himanthalia elongata Himel1 dioecious)
ATGGCGACCGTTCAGGTGTGTGATACCGAACCAGATGCGCCAAGTACGCC
GAGCAAGGGAGGACAGTGGGCGGCGGCACCCCTCGAGATCAACAGGCGTC
GAAATTTTGCTATAATTTCTCATCCCGATGCCGGAAAAACAACACTGACA
GAGAAGCTTTTGCTTTACGGTGGAGCTATCCAAGAGATGGCGACCGTTCA
GGTGTGTGATACCGAACCAGATGCGCCAAGTACGCCGAGCAAGGGAGGAC
AGTGGGCGGCGGCACCCCTCGAGATCAACAGGCGTCGAAATTTTGCTATA
ATTTCTCATCCCGATGCCGGAAAAACAACACTGACAGAGAAGCTTTTGCT
TTACGGTGGAGCTATCCAAGAGGCAGGAGCTGTTCGGTCACGAGCTGATC
AACGTAAAGCAACATCAGACTGGATGGAGATGGAGAAGCAGAGAGGCATA
TCTATTACCTCCACTGTTCTATCCTTCGACTATGAAGGGAACCACATCAA
TTTATTGGATACCCCAGGTCATCAGGCCAGTACCACGGCTGCAGCTCCTG
CAGGAGCTGTTCGGTCACGAGCTGATCAACGTAAAGCAACATCAGACTGG
ATGGAGATGGAGAAGCAGAGAGGCATATCTATTACCTCCACTGTTCTATC
CTTCGACTATGAAGGGAACCACATCAATTTATTGGATACCCCAGGTCATC
AGGCCAGTACCACGGCTGCAGCTCCTGATTTCTCTGAAGACACATACCGC
ACCCTCGCTGCCGCTGACAACGCGGTCATGCTCGTCGATGCCGCCAAGGG
ACTAGAGCCGCAAACGCGCAAACTGTTCGAGGATTTCTCTGAAGACACAT
ACCGCACCCTCGCTGCCGCTGACAACGCGGTCATGCTCGTCGATGCCGCC
AAGGGACTAGAGCCGCAAACGCGCAAACTGTTCGAGGTCTGCAAGCTCAG
GGAACTCCCTATTTTTACGTTCGTCAACAAGATGGACCGCCCCGCGCTTA
ATCCTTTCGAGCTTCTGGATCAGATTGAGCGAGAGTTTGGCATGCGCATG
GCCCCCGTGCTTTGGCCGATCGGAGAGGGAGAGCGGTTCAAGGTCTGCAA
GCTCAGGGAACTCCCTATTTTTACGTTCGTCAACAAGATGGACCGCCCCG
CGCTTAATCCTTTCGAGCTTCTGGATCAGATTGAGCGAGAGTTTGGCATG
CGCATGGCCCCCGTGCTTTGGCCGATCGGAGAGGGAGAGCGGTTCAAGGG
AGTACTTGATCGGGAAACAAGCACTGTTCATCTTTTCGAGCGGGCCAGCC
GCAAATCGAAAGCGACAGATGTTGCTGAGCTGACCCTGGACGACCCACAG
CTGCCGGAGCTGATAACGCAAGAACTCTTTGAACAGTTGATAGAGGATGC
GGAGATGCTCGACGAGGAGTACTTGATCGGGAAACAAGCACTGTTCATCT
TTTCGAGCGGGCCAGCCGCAAATCGAAAGCGACAGATGTTGCTGAGCTGA
CCCTGGACGACCCACAGCTGCCGGAGCTGATAACGCAAGAACTCTTTGAA
CAGTTGATAGAGGATGCGGAGATGCTCGACGAGCTCGTGGAACCTCTCGA
CATGGAGCGCGTCCTCACCGGCGAACAAAGTCCCATGTTTTTTGGGTCGG
CCATGACCAACTTTGGCGTTGAGCTCTTTCTCAAGCGGTTCCTCACCATA
GGACAAAAACCTGCATCCAGACGAACAGGGGCTCGTGGAACCTCTCGACA
TGGAGCGCGTCCTCACCGGCGAACAAAGTCCCATGTTTTTTGGGTCGGCC
ATGACCAACTTTGGCGTTGAGCTCTTTCTCAAGCGGTTCCTCACCATAGG
ACAAAAACCTGCATCCAGACGAACAGGGGCGTCTACAATCGCTCCAGACT
ACAATGAGTTTACGGGCTTTATTTTCAAGCTCCAAGCTAACCTCGATCCG
CGTCACCGGGACCGCCTGGCGTACGTTCGAGTGGTTTCGGGTCGATACGA
AAAGGGGATGAAGGCGTCTACAATCGCTCCAGACTACAATGAGTTTACGG
GCTTTATTTTCAAGCTCCAAGCTAACCTCGATCCGCGTCACCGGGACCGC
CTGGCGTACGTTCGAGTGGTTTCGGGTCGATACGAAAAGGGGATGAAGGT
GCAACACAGTCGAATGAAGAAGCAAGTTATCCTCTCCCATGCTCAGCAAC
TGTTCGCACAGGAGCGGGAGACGGTGCAGGTGCAACACAGTCGAATGAAG
AAGCAAGTTATCCTCTCCCATGCTCAGCAACTGTTCGCACAGGAGCGGGA
GACGGTGCAGGTGGCTTACCCAGGAGACGTGATCGGAATCAACAACCCTG
GCCACTTCGCCATCGGCGATACCATCTTCACAGGTAGCACAAAAATACGC
TTCCCTGGTATCCCATCCTTCAGCCCGGAATGCTTCACCTACATGAGAAA
TCCCAACCCCAGCAAATACAAGAACTACAGGAAAGGTCTCGACCAGGTGG
CTTACCCAGGAGACGTGATCGGAATCAACAACCCTGGCCACTTCGCCATC
GGCGATACCATCTTCACAGGTAGCACAAAAATACGCTTCCCTGGTATCCC
ATCCTTCAGCCCGGAATGCTTCACCTACATGAGAAATCCCAACCCCAGCA
AATACAAGAACTACAGGAAAGGTCTCGACCAGCTGCTCGACGAAGGCGCC
GTTCAAGTTCTGCGCGAGCGAAACGATGACGGAAATGGCAACCCTATCTT
GGCTGCGGTCGGCACCCTCCAATTCGACGCTGCTCGACGAAGGCGCCGTT
CAAGTTCTGCGCGAGCGAAACGATGACGGAAATGGCAACCCTATCTTGGC
TGCGGTCGGCACCCTCCAATTCGACGTTGTACAGCACCGGATGAAGGACG
AGTACGGCGTAGACACGATCCTGGAACCATTGCCCGGATATAAGACGGCG
CGCTGGGCCGAGGGGGGCTGGGATGCAATCAACGAGGCAACGTTGTACAG
CACCGGATGAAGGACGAGTACGGCGTAGACACGATCCTGGAACCATTGCC
CGGATATAAGACGGCGCGCTGGGCCGAGGGGGGCTGGGATGCAATCAACG
AGGCAACGAAAGCGGGAAAGCTATTCGGAATATTTTTCGCACAGGACAAG
TTTGGGCGCCCTGTTCTCCTTTTCCGCAACGAGTGGAAGCTAGCCAACAT
TCAGGAGGAGCTCCCTCAGCTTGAGCTCGTGCCTTGGTCGCACCCTCCTG
ACGTGGAGTGAAAAGCGGGAAAGCTATTCGGAATATTTTTCGCACAGGAC
AAGTTTGGGCGCCCTGTTCTCCTTTTCCGCAACGAGTGGAAGCTAGCCAA
CATTCAGGAGGAGCTCCCTCAGCTTGAGCTCGTGCCTTGGTCGCACCCTC
CTGACGTGGAGTGA
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