mRNA_H-elongata_contig13768.2647.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A6H5KVC1_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVC1_9PHAE) HSP 1 Score: 468 bits (1204), Expect = 5.630e-163 Identity = 243/338 (71.89%), Postives = 281/338 (83.14%), Query Frame = 1
Query: 25 SGVVRCR-HLLACPSAAAPRLACPRYRYPGQLFVALSGASLYNVRSFSGEASGGEISKRKQFKQITVDPKIIRHLDALGLGMEKKKVERGRKIRLYERGVVSSAAPGPTSSTSIPKTFDHPTWAVKKLLSVTRLDQIPPFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLERASVSETPGETRSLDFFRLGRGKRAKLILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLYDPKGLSPLGKYRPPKIQVLLTKCDLVKRIDLARRVSLVRQQLDEVSRRQTNLPTMMLSALKGRGLTELQRELAALDP 1035
SG RCR ++ P RL+C R P ++ SG++ VR FS E +G EISKR+QFKQI VD K++RHLDALGLGMEKKK+ERGRK+RLY RG VSSA PG T + + P+TFDHPTWAVK+L V++L++IPP LPEVA+VGRSNVGKSTLLNAL+G+KKHP +RASVSETPGETR+LDFF++G+GKRAK+I+ADMPGYGFAYA + QR DWKGLMMAYLRGRG PLKR+MLLLDARHGFKK DIEFL LLYDPKG SPLGKYRPPKIQ+LLTKCDLVKRIDLARRV VRQQL+EVSRRQTNL M LSALKG G+ ELQ+ELA+LDP
Sbjct: 4 SGFGRCRPRQVSAPGGL--RLSC---RQPLGAWMGRSGSTA--VRVFSTEPAGPEISKRQQFKQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKPRTFDHPTWAVKQLSPVSKLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNLSVMTLSALKGAGMVELQKELASLDP 334
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A835ZG72_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG72_9STRA) HSP 1 Score: 287 bits (735), Expect = 1.580e-89 Identity = 156/305 (51.15%), Postives = 213/305 (69.84%), Query Frame = 1
Query: 145 YNVRSFSGEASGGE---ISKRKQFKQITVDPKIIRHLDALGLGMEKKKVERGRKIRLYERGVVSSAAPGPTSSTSIPKTFDHPTWAVKKLLSVTRLDQIPPFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLERASVSETPGETRSLDFFRLGRGKRAKLILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLY-----DPKGLSPLGKYRPPKIQVLLTKCDLVKRIDLARRVSLVRQQLDEVSRRQTNLPTMMLSALKGRGLTELQRELAALDP 1035
++ + S + GE IS R F+ + +D K++ +LD+ LG E K RK L E+G+ + P S+ KTFD PTWAVKK+ S +++IPP + LPEVA VGRSNVGKSTLLNALLG+K HPL RA+ S PGETRS+DFFRLG+G +A+L+L D PG+GFA+A++ + + + ++ YLRGRG LKR+ +LLDARHGFK D+ FL+ LY D G +PLG Y+PPK+QV+LTKCDLV+R +LARRVS VR +L +V+ R+T LP +M+SAL+ + + +LQ+ELA L P
Sbjct: 60 FDASAGSSDDPSGEPATISNRAAFRALPIDNKVLAYLDSRDLGRELPKRASKRKRVLIEKGLHDLHSVTPESAAL--KTFDVPTWAVKKVASAQSVEEIPPPSE-LPEVAFVGRSNVGKSTLLNALLGLKGHPLVRAATSMRPGETRSIDFFRLGKGSKAQLLLVDTPGFGFAFAKEEESERFIATLLQYLRGRGALLKRVCMLLDARHGFKANDVAFLQRLYARKGQDGLGRNPLGPYKPPKLQVILTKCDLVQRRELARRVSQVRARLSDVTPRETYLPVLMVSALRDQAVEDLQKELAGLVP 361
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A7S2GV24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV24_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.290e-50 Identity = 97/197 (49.24%), Postives = 131/197 (66.50%), Query Frame = 1
Query: 457 EVAIVGRSNVGKSTLLNALLGMKKHPLERASVSETPGETRSLDFFRLGRGKRAKLILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLYDPKGL--SPLGKY---RPPKIQVLLTKCDLVKRIDLARRVSLVRQQL-DEVSRRQTNLPTMMLSALKGRGLTELQRELAAL 1029
E+A+VGRSNVGKS+LLN +L + P +A PG T+ L F+ R L L D+PGY FAY + + + W LM+ YLR RG LKR+ LLLDARHG K +D +FL LLY+P+ + P G++ PPK+QV+LTKCDLV R DL RR+ VR+++ DE+ R L +M+SA +G+G+ ELQRELA+L
Sbjct: 40 EIALVGRSNVGKSSLLNTVLNISASPKNKAPTGTRPGVTQKLHFY--AAATRKPLTLVDVPGYSFAYEDQERIEAWNDLMLKYLRHRGPSLKRVCLLLDARHGLKVIDRQFLRLLYEPRPIVDPPPGEHVLWDPPKLQVILTKCDLVDRFDLVRRIQRVREEMSDELPSRAGRLQAIMVSAREGKGIMELQRELASL 234
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: B7FQ16_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ16_PHATC) HSP 1 Score: 159 bits (402), Expect = 7.840e-42 Identity = 123/358 (34.36%), Postives = 175/358 (48.88%), Query Frame = 1
Query: 151 VRSFSGEASGGEISKRKQFKQITVDPKIIRHLDALGLGMEKKKVERGRKIRLYERGVVSSAAPGPTSSTSI------------PKTFDHPTWAVKKLLSVTRLDQ-IPPFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLE--------------------RASVSETPGETRSLDFFRLG-RGKRAK-------LILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIP-LKRIMLLLDARHGFKKLDIEFLELLYDPK----------GLSPLGKYRPPKIQVLLTKCDLVKRIDLARRVSLVRQQLDEVSRRQ-TNLPTMMLSALKG------------RGLTELQRELAAL 1029
R FS ++S R+ FK++ V P I ++ +G+G+ ++ ++ + E G G + P F + VK + +V LD P +PE+ + GRSNVGKSTLLNALL KH +A+ S+ PGETR++ F++L R +R L L D+PGYGFAYA++ ++ LM YL RG LKR++LL+DARHG KK D++FL L + G PP IQ++LTKCDLV R DLARRV+ VR QL + R+ + LP M++SA G G+ ELQ+E+ AL
Sbjct: 8 TRIFSSSVIDAKVSNRRSFKELAVHPSIHNYIQLIGVGIPPRRSKKKSQRIAIEPGRFRDRRGGRAMNPEATEDQKRERHWKPPPPFGPKAFPVKVVGNVATLDDHYPANHKNIPEIVLAGRSNVGKSTLLNALLYGNKHADAVVRQRVRGKTPESVKQPKGMKATTSDKPGETRAITFYQLAARLERENGVFYDHALRLVDLPGYGFAYAKEEAARRYRALMADYLLKRGNKYLKRVLLLIDARHGMKKADVDFLMDLQEHSRHLQENSRLDGKRKKNAQLPP-IQLVLTKCDLVTRADLARRVAQVRSQLSDCFIREPSQLPVMLVSARAGVGYNNVVGDKARGGVLELQKEIVAL 364
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A7S1VXG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXG1_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.260e-41 Identity = 110/257 (42.80%), Postives = 142/257 (55.25%), Query Frame = 1
Query: 424 DQIPPFEDRLPEVAIVGRSNVGKSTLLNALL--GMKKHPLER------------------ASVSETPGETRSLDFFRLG----------RGKRAK----LILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLYDP------KGLSPLGKYRPPKIQVLLTKCDLVKRIDLARRVSLVRQQL-DEVSRRQTNLPTMMLSALKGRG------------LTELQRELAALDP 1035
+++P L EVA+ GRSNVGKSTLLNALL P ER A +S+ PGETR + ++L +GK+ K L+LAD+PGYGFA+A + + +W LM YL RG LKR++LL+DARHG K D EFL L + +G +P P IQ++LTKCDLV + DLARRV VRQQL D + R ++LP M++SA G G + ELQRELAAL P
Sbjct: 263 EELPKSSKGLSEVALAGRSNVGKSTLLNALLYGNQLGKPQERQYRRGKTPENAKLPKGVKAVMSDKPGETRRITLYQLSSEIIKPPKDEQGKKHKEKMSLLLADLPGYGFAFASEEKYKEWHDLMRHYLLDRGKSLKRVLLLIDARHGMKNADFEFLSSLQESLKSTSKEGATPKNVRELPPIQIVLTKCDLVTQDDLARRVVQVRQQLSDNLLREPSSLPVMLVSAKAGLGYNNIRGGIARGGVLELQRELAALVP 519
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A1Z5JKA0_FISSO (GTP-binding protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKA0_FISSO) HSP 1 Score: 156 bits (394), Expect = 2.170e-41 Identity = 106/290 (36.55%), Postives = 159/290 (54.83%), Query Frame = 1
Query: 148 NVRSFSGEASGGEISKRKQFKQITVDPKIIRHLDALGLGMEKKKVERGRKIRLYERGVVSSAAPGPTSSTSIPKTFD---HPTWAVKKLLSVTRLDQ---IPPFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLE----------------------RASVSETPGETRSLDFFRLGRGKRA--KLILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLYDP---KGLSPLGKYRPPKIQVLLTKCDLVKRIDLARRVSLV 918
++ SF+ + + G+ S+++QF+ VDP I++++ ++G+G+ ++ + R + S A PTS +P F P + + +V LD+ PP PE+A++GRSNVGKSTLLN LL ++ +A S PGET+ + F+ L G+ + +L L D+PGYGFAYA + + L+ ++L+ R LKRI+LL+DARHG KK DI+FL LL D K + K P IQV+LTKCDLV + DLARRV L+
Sbjct: 26 HLLSFTTDTAVGK-SQKQQFRDTPVDPSILKYITSVGVGIPPRRRKNRRNDNTPDE---VSNANNPTSW-KVPLPFGPNASPVRVIASVSAVNTLDENMGFPPVHKERPEIALIGRSNVGKSTLLNTLLYANRNENRQQEGGRAGRRSRIQTIELPRGIKAVTSNKPGETKHVTFYHLSSGEDSTCRLCLVDLPGYGFAYASEETKKTVDELIFSFLKQRQGHLKRILLLIDARHGMKKADIDFLTLLEDELVYKDSANNKKKTLPPIQVVLTKCDLVHQADLARRVRLM 310
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A7S1ZZ98_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ98_TRICV) HSP 1 Score: 159 bits (402), Expect = 6.190e-41 Identity = 112/265 (42.26%), Postives = 143/265 (53.96%), Query Frame = 1
Query: 424 DQIPPFEDRLPEVAIVGRSNVGKSTLLNALL-----------------------GMKKHPLERASVSETPGETRSLDFFRLG-----------RGKRAK--LILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLYDP------KGLSPLGK------YRPPKIQVLLTKCDLVKRIDLARRVSLVRQQLDEVSRRQ-TNLPTMMLSALKG------------RGLTELQRELAALDP 1035
D +P LPEVA+ GRSNVGKSTLLNALL MK E+A VS+ PGET+ + ++L R ++K L+LAD+PGYGFAYA + + W LM YL RG LKRI+LL+DARHGFK D FLE L + KG K + P IQ++LTKCDL K+ DLARRV V++QL + +RQ ++LP M++SA G G+ +LQRELAAL P
Sbjct: 229 DDMPRSSSGLPEVALAGRSNVGKSTLLNALLYGNQPSRDGHSVERMYQRGKTPERMKLPRGEKAKVSDKPGETQDITLYQLSSDMVFLNKEGQRENKSKMSLVLADLPGYGFAYASENKATTWSELMKHYLLRRGESLKRILLLIDARHGFKNADYAFLETLQNALKEGQKKGAHVSSKQQCGLEFDLPPIQIVLTKCDLCKQDDLARRVVQVKEQLSKSLKRQPSSLPVMLVSAKTGVGYNNIRRGKARGGMLQLQRELAALVP 493
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A1Z5J7J0_FISSO (GTP-binding protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7J0_FISSO) HSP 1 Score: 155 bits (391), Expect = 7.100e-41 Identity = 103/274 (37.59%), Postives = 149/274 (54.38%), Query Frame = 1
Query: 190 SKRKQFKQITVDPKIIRHLDALGLGMEKKKVERGRKIRLYERGVVSSAAPGPTSSTSIPKTFDHPTWAVKKLLSVTRLDQI------PPFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLE----------------------RASVSETPGETRSLDFFRLGRGKRA--KLILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELLYDP---KGLSPLGKYRPPKIQVLLTKCDLVKRIDLARRVS 912
S+R+QF+ VDP I++++ ++G+G+ R RK R + G A PTS +P F V+ + SV+ ++ + PP PE+A +GRSNVGKSTLLN LL ++ +A S PGET+ + F+ L G+ + +L L D+PGYGFAYA + + L+ ++L+ R LKRI+LL+DARHG KK DI+FL +L D K + + K P IQV+LTKCDLV + +LARR S
Sbjct: 41 SQRQQFRDTPVDPSILKYITSIGVGIP----PRRRKNRRND-GTTDENANNPTSW-KVPLPFGPNALPVRVIASVSAVNTLDENMGFPPVHKERPEIAFIGRSNVGKSTLLNTLLYANRNENRAADGGRAGRRSRIQTIELPKGIKAVTSNKPGETKQVTFYHLSSGEDSTCRLCLVDLPGYGFAYASEETKKTVDDLIFSFLKQRQGHLKRILLLIDARHGMKKADIDFLTMLEDELVYKDSANIKKKTLPPIQVVLTKCDLVHQGELARRCS 308
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A812TAA1_SYMMI (EngB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TAA1_SYMMI) HSP 1 Score: 151 bits (381), Expect = 2.890e-40 Identity = 91/221 (41.18%), Postives = 131/221 (59.28%), Query Frame = 1
Query: 436 PFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLERASVSETPGETRSLDFFRLGRGKRAK---LILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFL------------ELLYDPKG--------LSPLGKYRPPKIQVLLTKCDLVKRIDLARRVSLVRQQLDEVSRRQTNLPTMMLSALKGRGLTELQRELAAL 1029
P PEVAI+GRSN GKSTL+N+LLG +RA VS PGET++L F+ L + ++K L + DMPGYGF++ + + L +Y+R RG LKR++L++DARHG K+ D L ++ DP K+Q++LTKCDLV+R+DLARR++ VR Q+ + + +LP MM+SA KG G+ ELQ+EL++L
Sbjct: 18 PMLGECPEVAIIGRSNAGKSTLVNSLLGYDSSYTKRAPVSSKPGETQALQFYVLRKQYKSKQPALGIVDMPGYGFSFTSEKEAQRCFTLNSSYIRLRGKNLKRVLLVVDARHGLKRTDFRCLHDLMSNTFRDAGDITTDPSADFDVKFDHSKKSANDATWKLQIILTKCDLVERLDLARRIAAVRDQV-RANFFEDDLPVMMVSAAKGLGIVELQKELSSL 237
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Match: A0A7R9YFZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ8_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.120e-37 Identity = 90/218 (41.28%), Postives = 123/218 (56.42%), Query Frame = 1
Query: 211 QITVDPKIIRHLDALGLGMEKKKVERGRKIRLYERGVVSS--------------AAPGPTSSTSIPKTF------DHPTWAVKKLLSVTRLDQIPPFEDRLPEVAIVGRSNVGKSTLLNALLGMKKHPLERASVSETPGETRSLDFFRLG-RGKRAKLILADMPGYGFAYAQKAQRDDWKGLMMAYLRGRGIPLKRIMLLLDARHGFKKLDIEFLELL 801
Q+ +I +L+ GLG K R +R+ +RG V S AA + +PK D W +++ VT ++IP +DRLPEV I+GRSNVGKSTLLNA+L K HPL RA S+ PG TR+LDF+ +G + +R ++ L D PGYGFAY + + W L + +L+G L+R++LLLDARHGFK D FLE L
Sbjct: 44 QVRSRAQIEAYLETRGLGRIKGDRSRSGALRIAKRGRVKSGKIKGARNQVTAVEAALLRKAELKVPKEVSEYFSRDGARWNTRRIAHVTSEEEIPAPKDRLPEVMIIGRSNVGKSTLLNAILDTKGHPLRRAETSDKPGLTRTLDFYSVGGKRQRPRMALIDAPGYGFAYGKTVELLKWHHLTLRFLQGNRPSLRRLLLLLDARHGFKAADKNFLEAL 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13768.2647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13768.2647.1 >prot_H-elongata_contig13768.2647.1 ID=prot_H-elongata_contig13768.2647.1|Name=mRNA_H-elongata_contig13768.2647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp MNLAVLARSGVVRCRHLLACPSAAAPRLACPRYRYPGQLFVALSGASLYNback to top mRNA from alignment at H-elongata_contig13768:2656..7252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13768.2647.1 ID=mRNA_H-elongata_contig13768.2647.1|Name=mRNA_H-elongata_contig13768.2647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4597bp|location=Sequence derived from alignment at H-elongata_contig13768:2656..7252- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13768:2656..7252- >mRNA_H-elongata_contig13768.2647.1 ID=mRNA_H-elongata_contig13768.2647.1|Name=mRNA_H-elongata_contig13768.2647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig13768:2656..7252- (Himanthalia elongata Himel1 dioecious)back to top |