mRNA_H-elongata_contig13736.2628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13736.2628.1
Unique NamemRNA_H-elongata_contig13736.2628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 9.060e-28
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   16 ALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            A+V  Y +SSQM+ RL    GILK   L V+QDV+TRW S+++ +ER   L  AI+LHE  DNIAP+L++ DW VL+LIEP LRPFM+A  +LEGAKYVT
Sbjct:  198 AVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVT 297          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.560e-27
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            + L   LV  Y KSSQMA RL ++ GIL+   L V+QDV+TRW ST++ V R   L  AI+LHE +D + PLL+D DW VL+LIEP LRPFM+A  +LEGA+YVT
Sbjct:  157 LGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVT 261          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.920e-20
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            +AL   +VT Y  SSQ +DRLE+M  I++     VVQDV+TRW ST++S+ R   LR  I  HER+D+I PLL + DW VL+++EP  +PF+ +    E +K VT
Sbjct:  166 LALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVT 270          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.720e-20
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            +AL   +VT Y  SSQ +DRLE++  I++    +VVQDV+TRW ST+ S+ R   LR  I  HE +D+  PLL + DW VL+L+E  L+PFM A   LE +K VT
Sbjct:  122 LALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVT 226          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI000C143D9D (zinc finger BED domain-containing protein 1-like n=1 Tax=Spodoptera litura TaxID=69820 RepID=UPI000C143D9D)

HSP 1 Score: 70.1 bits (170), Expect = 8.330e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERL-DNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            +VT Y KS+  A+RL K          H++QDV TRWNSTF  + R  +L++A++    L D   P LT +DW + + +   LRPF E    + G KY+T
Sbjct:  305 IVTHYKKSTVSAERLAKYQLQQNIQPKHLIQDVDTRWNSTFYMLSRFVELKEAVRSTMALIDRDLPQLTAEDWSMFEELIVVLRPFEELTKSMSGEKYLT 404          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A7E5WZM1_TRINI (zinc finger BED domain-containing protein 1-like n=1 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5WZM1_TRINI)

HSP 1 Score: 66.2 bits (160), Expect = 1.870e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNI-APLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            +V  Y +S+  ++RL K     +    H++QDV+TRWNSTF  V R  +L++A++    L N   P++T+D+W  L  +   LRPF E  + +    Y+T
Sbjct:  312 IVAHYKRSTVSSERLSKYQVQQQQTPKHLIQDVETRWNSTFYMVRRFIELQEAVRSTLALVNKNLPVITNDEWSTLSQLCQILRPFEEVTSMMSAQNYLT 411          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI001EEB5596 (zinc finger BED domain-containing protein 4-like n=6 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB5596)

HSP 1 Score: 65.5 bits (158), Expect = 2.790e-10
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNI-APLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            +VT + +S+   ++L      +      ++Q+V TRWNSTF  V R  +L+DA++    L N   P+L++++WG+ K +   LRPF E  +++ G +YVT
Sbjct:    9 IVTFFKRSTNATEKLLISQKNMGLEPKKLIQEVSTRWNSTFYMVSRFVELQDAVKTTIALINKNLPVLSEEEWGLCKELSTILRPFEEVTSQISGERYVT 108          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI001F9F4A45 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9F4A45)

HSP 1 Score: 65.5 bits (158), Expect = 2.930e-10
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGA 303
            + T +  S+   D L  +   L   +L + Q+  TRWNSTF  +ER  Q+++++ ++   +N  PLLT ++W ++K +   LRPF E   EL  A
Sbjct:   17 IATHFHHSNSAQDELANIQKRLLQKTLKIKQECTTRWNSTFHMLERILQVKESVCIYASTNNKIPLLTSEEWMIIKKLSGVLRPFDELTKELSSA 111          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI001EE9F9CC (uncharacterized protein LOC124373333 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9F9CC)

HSP 1 Score: 63.9 bits (154), Expect = 6.470e-10
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  103 VVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNI-APLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            ++Q+V TRWNSTF  V R  +L+DA++    L N   P+L++++WG+ K +   LRPF E  +++ G +YVT
Sbjct:    8 LIQEVSTRWNSTFYMVSRFVELQDAVKTTIALINKNLPVLSEEEWGLCKELSTILRPFEEVTSQISGERYVT 79          
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: X1X0J3_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X0J3_ACYPI)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-9
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   19 LVTPYPKSSQMADRLE--KMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQ-LHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
            +VT + KSS+   +L   + S   KAP   ++QD+ TRWNST+  ++R  +L DAI+     LDN    L+ D+W + K +   LRPF EA   + G+KY+T
Sbjct:  292 IVTHFRKSSRANHKLNMYQTSNGSKAPK-KLMQDISTRWNSTYYMLDRFVELEDAIRGTLGLLDNPPQTLSADEWKITKELIQVLRPFEEATKAVSGSKYMT 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE9.060e-2858.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI2.560e-2756.19Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JJV8_9PHAE2.920e-2046.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE6.720e-2047.62Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI000C143D9D8.330e-1239.00zinc finger BED domain-containing protein 1-like n... [more]
A0A7E5WZM1_TRINI1.870e-1035.00zinc finger BED domain-containing protein 1-like n... [more]
UPI001EEB55962.790e-1034.00zinc finger BED domain-containing protein 4-like n... [more]
UPI001F9F4A452.930e-1033.68Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI001EE9F9CC6.470e-1041.67uncharacterized protein LOC124373333 n=1 Tax=Homal... [more]
X1X0J3_ACYPI2.200e-939.22BED-type domain-containing protein n=1 Tax=Acyrtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13736contigH-elongata_contig13736:6428..6745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue6.6e-24
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.766324-CDS-H-elongata_contig13736:6427..67451622929815.766324-CDS-H-elongata_contig13736:6427..6745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13736 6428..6745 +
1691679168.3754637-CDS-H-elongata_contig13736:6427..67451691679168.3754637-CDS-H-elongata_contig13736:6427..6745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13736 6428..6745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13736.2628.1prot_H-elongata_contig13736.2628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13736 6428..6745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13736.2628.1

>prot_H-elongata_contig13736.2628.1 ID=prot_H-elongata_contig13736.2628.1|Name=mRNA_H-elongata_contig13736.2628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSV
ERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEG
AKYVT*
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mRNA from alignment at H-elongata_contig13736:6428..6745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13736.2628.1 ID=mRNA_H-elongata_contig13736.2628.1|Name=mRNA_H-elongata_contig13736.2628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig13736:6428..6745+ (Himanthalia elongata Himel1 dioecious)
ATGGCACTCCAACCGGCACTCGTTACCCCGTACCCCAAATCAAGTCAAAT GGCTGACCGCCTCGAAAAGATGTCCGGGATACTCAAGGCGCCTTCGCTGC ATGTGGTGCAGGATGTGCAAACAAGGTGGAACTCAACGTTTAGTTCGGTA GAGCGTACAAGGCAACTGCGTGACGCAATCCAACTGCACGAGCGCCTCGA CAACATAGCACCACTGCTGACAGATGACGACTGGGGAGTGCTGAAGTTGA TCGAGCCTTTTCTTCGACCTTTCATGGAGGCACATACGGAGTTGGAGGGC GCAAAATACGTCACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig13736:6428..6745+

>mRNA_H-elongata_contig13736.2628.1 ID=mRNA_H-elongata_contig13736.2628.1|Name=mRNA_H-elongata_contig13736.2628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig13736:6428..6745+ (Himanthalia elongata Himel1 dioecious)
ATGGCACTCCAACCGGCACTCGTTACCCCGTACCCCAAATCAAGTCAAAT
GGCTGACCGCCTCGAAAAGATGTCCGGGATACTCAAGGCGCCTTCGCTGC
ATGTGGTGCAGGATGTGCAAACAAGGTGGAACTCAACGTTTAGTTCGGTA
GAGCGTACAAGGCAACTGCGTGACGCAATCCAACTGCACGAGCGCCTCGA
CAACATAGCACCACTGCTGACAGATGACGACTGGGGAGTGCTGAAGTTGA
TCGAGCCTTTTCTTCGACCTTTCATGGAGGCACATACGGAGTTGGAGGGC
GCAAAATACGTCACATAAATGGCACTCCAACCGGCACTCGTTACCCCGTA
CCCCAAATCAAGTCAAATGGCTGACCGCCTCGAAAAGATGTCCGGGATAC
TCAAGGCGCCTTCGCTGCATGTGGTGCAGGATGTGCAAACAAGGTGGAAC
TCAACGTTTAGTTCGGTAGAGCGTACAAGGCAACTGCGTGACGCAATCCA
ACTGCACGAGCGCCTCGACAACATAGCACCACTGCTGACAGATGACGACT
GGGGAGTGCTGAAGTTGATCGAGCCTTTTCTTCGACCTTTCATGGAGGCA
CATACGGAGTTGGAGGGCGCAAAATACGTCACATAA
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