mRNA_H-elongata_contig13736.2628.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 115 bits (287), Expect = 9.060e-28 Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 16 ALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
A+V Y +SSQM+ RL GILK L V+QDV+TRW S+++ +ER L AI+LHE DNIAP+L++ DW VL+LIEP LRPFM+A +LEGAKYVT
Sbjct: 198 AVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVT 297
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 114 bits (284), Expect = 2.560e-27 Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 1 MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+ L LV Y KSSQMA RL ++ GIL+ L V+QDV+TRW ST++ V R L AI+LHE +D + PLL+D DW VL+LIEP LRPFM+A +LEGA+YVT
Sbjct: 157 LGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVT 261
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.920e-20 Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 1 MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+AL +VT Y SSQ +DRLE+M I++ VVQDV+TRW ST++S+ R LR I HER+D+I PLL + DW VL+++EP +PF+ + E +K VT
Sbjct: 166 LALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVT 270
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 6.720e-20 Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 1 MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+AL +VT Y SSQ +DRLE++ I++ +VVQDV+TRW ST+ S+ R LR I HE +D+ PLL + DW VL+L+E L+PFM A LE +K VT
Sbjct: 122 LALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVT 226
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI000C143D9D (zinc finger BED domain-containing protein 1-like n=1 Tax=Spodoptera litura TaxID=69820 RepID=UPI000C143D9D) HSP 1 Score: 70.1 bits (170), Expect = 8.330e-12 Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERL-DNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+VT Y KS+ A+RL K H++QDV TRWNSTF + R +L++A++ L D P LT +DW + + + LRPF E + G KY+T
Sbjct: 305 IVTHYKKSTVSAERLAKYQLQQNIQPKHLIQDVDTRWNSTFYMLSRFVELKEAVRSTMALIDRDLPQLTAEDWSMFEELIVVLRPFEELTKSMSGEKYLT 404
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: A0A7E5WZM1_TRINI (zinc finger BED domain-containing protein 1-like n=1 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5WZM1_TRINI) HSP 1 Score: 66.2 bits (160), Expect = 1.870e-10 Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNI-APLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+V Y +S+ ++RL K + H++QDV+TRWNSTF V R +L++A++ L N P++T+D+W L + LRPF E + + Y+T
Sbjct: 312 IVAHYKRSTVSSERLSKYQVQQQQTPKHLIQDVETRWNSTFYMVRRFIELQEAVRSTLALVNKNLPVITNDEWSTLSQLCQILRPFEEVTSMMSAQNYLT 411
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI001EEB5596 (zinc finger BED domain-containing protein 4-like n=6 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB5596) HSP 1 Score: 65.5 bits (158), Expect = 2.790e-10 Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query: 19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNI-APLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+VT + +S+ ++L + ++Q+V TRWNSTF V R +L+DA++ L N P+L++++WG+ K + LRPF E +++ G +YVT
Sbjct: 9 IVTFFKRSTNATEKLLISQKNMGLEPKKLIQEVSTRWNSTFYMVSRFVELQDAVKTTIALINKNLPVLSEEEWGLCKELSTILRPFEEVTSQISGERYVT 108
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI001F9F4A45 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9F4A45) HSP 1 Score: 65.5 bits (158), Expect = 2.930e-10 Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 19 LVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGA 303
+ T + S+ D L + L +L + Q+ TRWNSTF +ER Q+++++ ++ +N PLLT ++W ++K + LRPF E EL A
Sbjct: 17 IATHFHHSNSAQDELANIQKRLLQKTLKIKQECTTRWNSTFHMLERILQVKESVCIYASTNNKIPLLTSEEWMIIKKLSGVLRPFDELTKELSSA 111
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: UPI001EE9F9CC (uncharacterized protein LOC124373333 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9F9CC) HSP 1 Score: 63.9 bits (154), Expect = 6.470e-10 Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 103 VVQDVQTRWNSTFSSVERTRQLRDAIQLHERLDNI-APLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
++Q+V TRWNSTF V R +L+DA++ L N P+L++++WG+ K + LRPF E +++ G +YVT
Sbjct: 8 LIQEVSTRWNSTFYMVSRFVELQDAVKTTIALINKNLPVLSEEEWGLCKELSTILRPFEEVTSQISGERYVT 79
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Match: X1X0J3_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X0J3_ACYPI) HSP 1 Score: 63.2 bits (152), Expect = 2.200e-9 Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 19 LVTPYPKSSQMADRLE--KMSGILKAPSLHVVQDVQTRWNSTFSSVERTRQLRDAIQ-LHERLDNIAPLLTDDDWGVLKLIEPFLRPFMEAHTELEGAKYVT 315
+VT + KSS+ +L + S KAP ++QD+ TRWNST+ ++R +L DAI+ LDN L+ D+W + K + LRPF EA + G+KY+T
Sbjct: 292 IVTHFRKSSRANHKLNMYQTSNGSKAPK-KLMQDISTRWNSTYYMLDRFVELEDAIRGTLGLLDNPPQTLSADEWKITKELIQVLRPFEEATKAVSGSKYMT 392 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13736.2628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13736.2628.1 >prot_H-elongata_contig13736.2628.1 ID=prot_H-elongata_contig13736.2628.1|Name=mRNA_H-elongata_contig13736.2628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MALQPALVTPYPKSSQMADRLEKMSGILKAPSLHVVQDVQTRWNSTFSSVback to top mRNA from alignment at H-elongata_contig13736:6428..6745+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13736.2628.1 ID=mRNA_H-elongata_contig13736.2628.1|Name=mRNA_H-elongata_contig13736.2628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig13736:6428..6745+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13736:6428..6745+ >mRNA_H-elongata_contig13736.2628.1 ID=mRNA_H-elongata_contig13736.2628.1|Name=mRNA_H-elongata_contig13736.2628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig13736:6428..6745+ (Himanthalia elongata Himel1 dioecious)back to top |