mRNA_H-elongata_contig137289.2623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137289.2623.1
Unique NamemRNA_H-elongata_contig137289.2623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.570e-26
Identity = 52/123 (42.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVA-PEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            P+T +     +Y   WEAA+++E++GHD+T TFT +   PEG   + +KW FSWK NE G ++  K R+VARGFSQ   ++F  + +  PS++S++ +  VA E  +++ HWDVKQA++ A L
Sbjct:  265 PMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKL 387          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.100e-25
Identity = 50/123 (40.65%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVA-PEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            P+T +     +Y   WEAAM++E++GHD+T TFT +   PEG   + +KW  SWK +E G ++  K R+VARGFSQ   ++F  + +  PS++S++ +   A E  +++ HWDVKQA++ A L
Sbjct:  108 PMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKL 230          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A0K8TZB9_BACLA (Copia protein n=3 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8TZB9_BACLA)

HSP 1 Score: 104 bits (260), Expect = 1.530e-23
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   52 WEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            WE A+QDEL  H E  T++ +  P+  N+V  KW F+ K +E G ++R K RLVARGF+Q Y  ++DETFAP    SS  ++  ++N+Y  +M H DVK AF+   L
Sbjct:  858 WEKAIQDELQSHSENNTWSLVAKPDKKNIVDCKWVFTIKQDECGNLVRYKARLVARGFTQEYLTDYDETFAPVARISSFRLMLALSNQYGLKMHHMDVKTAFLNGVL 964          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: UPI001C059F6C (hypothetical protein n=1 Tax=Gluconobacter sp. P5B12 TaxID=2762618 RepID=UPI001C059F6C)

HSP 1 Score: 98.6 bits (244), Expect = 2.780e-23
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            S WE A+  ELN H    T+T    PE  N+V ++W FS K NE+G  +R K RLVARGF+Q Y+++++ETFAP    SS   I  +  +Y  ++   DVK AF+   L
Sbjct:   36 SSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLXIQYNLKVHQMDVKTAFLNGTL 144          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A034VP82_BACDO (Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP82_BACDO)

HSP 1 Score: 101 bits (252), Expect = 1.830e-22
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            +LWE A+QDELN H    T+  +  P   N+V  KW FS K +E G +L+ K RLVARGF+Q Y +++DETFAP    SS   +   +N+Y   + H DVK AF+   L
Sbjct:  868 TLWEEAIQDELNSHFVNNTWCLVQRPMDKNIVDCKWVFSLKQDENGNLLKYKARLVARGFTQEYMMDYDETFAPVARISSFRFLLAFSNQYNLLIHHMDVKTAFLYGTL 976          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: COPIA_DROME (Copia protein n=6 Tax=cellular organisms TaxID=131567 RepID=COPIA_DROME)

HSP 1 Score: 99.0 bits (245), Expect = 1.610e-21
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            S WE A+  ELN H    T+T    PE  N+V ++W FS K NE+G  +R K RLVARGF+Q Y+++++ETFAP    SS   I  +  +Y  ++   DVK AF+   L
Sbjct:  904 SSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTL 1012          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD)

HSP 1 Score: 96.7 bits (239), Expect = 1.040e-20
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVAPEG--SNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            P T++ A+    W LWE A+Q EL  H+  +T+T +  P+   +NVVS KW F+ K    G + + K RLVARGF+Q Y  ++DETF+P   ++++ I+ G+A  +  ++ HWD   AF+   L
Sbjct:  953 PATLKQARMRADWPLWEGAIQAELKSHESNKTWTLVDHPQNKATNVVSCKWVFAIKKKADGSLDKYKARLVARGFTQRYGYDYDETFSPVVKATTLRILIGLAAAFDWKIVHWDAVTAFLNGRL 1076          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A6V7KQP7_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7KQP7_9HYME)

HSP 1 Score: 95.9 bits (237), Expect = 1.790e-20
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   52 WEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            WE A++ E++     ET++ +  P G N+V  KW FS K +E GQ+ + K RLVARGFSQ Y  ++DETFAP    +S   I   AN++   + H DVK AF+  NL
Sbjct:  511 WEEAIKAEIDSLLINETWSLVPKPPGKNIVDCKWIFSIKTDEHGQLAKYKARLVARGFSQEYLTDYDETFAPVARIASFRFILAFANQFNLLIHHMDVKMAFLNGNL 617          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA)

HSP 1 Score: 95.5 bits (236), Expect = 2.590e-20
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVAPEG--SNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANLH 375
            P T++ A+    W LWE A+Q EL  H+  +T+T +  P+   +NVVS KW F+ K    G + + K RLVARGF+Q Y  ++DETF+P   ++++ I+ G+A  +  ++ HWD   AF+  + +
Sbjct:  954 PATLKQARMRADWPLWEGAIQAELKSHESNKTWTLVDHPQNKATNVVSCKWVFAIKKKADGSLDKYKARLVARGFTQRYGYDYDETFSPVVKATTLRILIGLAAAFDWKIVHWDAVTAFLNEDAY 1078          
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A194PHT8_PAPXU (Copia protein n=2 Tax=Papilio TaxID=7145 RepID=A0A194PHT8_PAPXU)

HSP 1 Score: 95.5 bits (236), Expect = 2.590e-20
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
            S WE A+ DEL  H   +T+T +  P+G N+V  KW F+ K +E G+  R K RLVARGFSQ Y  ++DETFAP    ++   +   A ++   + H DVK AF+   L
Sbjct:  613 SQWEGAINDELKSHAINKTWTLVPRPQGKNIVDCKWIFTVKNDEFGKPSRYKARLVARGFSQQYLTDYDETFAPVARIATFRFLMSFAIQHNLLVHHMDVKTAFLNGKL 721          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ24_9PHAE1.570e-2642.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRB0_9PHAE3.100e-2540.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0K8TZB9_BACLA1.530e-2344.86Copia protein n=3 Tax=Bactrocera latifrons TaxID=1... [more]
UPI001C059F6C2.780e-2343.12hypothetical protein n=1 Tax=Gluconobacter sp. P5B... [more]
A0A034VP82_BACDO1.830e-2244.95Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27... [more]
COPIA_DROME1.610e-2143.12Copia protein n=6 Tax=cellular organisms TaxID=131... [more]
Q2EPY7_USTMD1.040e-2038.71Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2... [more]
A0A6V7KQP7_9HYME1.790e-2043.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A0D1DPX6_USTMA2.590e-2037.60Retrotransposon HobS hobase n=1 Tax=Ustilago maydi... [more]
A0A194PHT8_PAPXU2.590e-2042.20Copia protein n=2 Tax=Papilio TaxID=7145 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137289contigH-elongata_contig137289:1124..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score96.3
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog5270.UM01393P0
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.413995-CDS-H-elongata_contig137289:1123..15131622929815.413995-CDS-H-elongata_contig137289:1123..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137289 1124..1513 +
1691679168.2353005-CDS-H-elongata_contig137289:1123..15131691679168.2353005-CDS-H-elongata_contig137289:1123..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137289 1124..1513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137289.2623.1prot_H-elongata_contig137289.2623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137289 1124..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137289.2623.1

>prot_H-elongata_contig137289.2623.1 ID=prot_H-elongata_contig137289.2623.1|Name=mRNA_H-elongata_contig137289.2623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
TTPLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAK
WSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIA
GVANEYRRQMRHWDVKQAFVRANLHLTFS*
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mRNA from alignment at H-elongata_contig137289:1124..1513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137289.2623.1 ID=mRNA_H-elongata_contig137289.2623.1|Name=mRNA_H-elongata_contig137289.2623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig137289:1124..1513+ (Himanthalia elongata Himel1 dioecious)
ACTACGCCGTTGACAGTTCAGACTGCGCAGCGTTTCGAGTACTGGTCGCT GTGGGAGGCCGCAATGCAGGACGAATTGAATGGTCACGATGAAACGGAGA CTTTCACACCCATGGTTGCCCCGGAAGGGTCGAACGTTGTATCGGCCAAA TGGAGTTTTAGTTGGAAGGCCAATGAAATCGGGCAAGTTCTTAGGACCAA GGTGAGGCTTGTTGCTCGCGGATTTAGTCAATCATACAAGGTTAACTTCG ATGAGACATTTGCCCCGACTCCCTCTTCTTCGTCTGTTGAGATAATAGCG GGAGTAGCTAACGAGTATCGCCGCCAGATGCGACACTGGGATGTGAAGCA GGCATTTGTGAGAGCAAATTTACACTTGACATTTTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig137289:1124..1513+

>mRNA_H-elongata_contig137289.2623.1 ID=mRNA_H-elongata_contig137289.2623.1|Name=mRNA_H-elongata_contig137289.2623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig137289:1124..1513+ (Himanthalia elongata Himel1 dioecious)
ACTACGCCGTTGACAGTTCAGACTGCGCAGCGTTTCGAGTACTGGTCGCT
GTGGGAGGCCGCAATGCAGGACGAATTGAATGGTCACGATGAAACGGAGA
CTTTCACACCCATGGTTGCCCCGGAAGGGTCGAACGTTGTATCGGCCAAA
TGGAGTTTTAGTTGGAAGGCCAATGAAATCGGGCAAGTTCTTAGGACCAA
GGTGAGGCTTGTTGCTCGCGGATTTAGTCAATCATACAAGGTTAACTTCG
ATGAGACATTTGCCCCGACTCCCTCTTCTTCGTCTGTTGAGATAATAGCG
GGAGTAGCTAACGAGTATCGCCGCCAGATGCGACACTGGGATGTGAAGCA
GGCATTTGTGAGAGCAAATTTACACTTGACATTTTCATGAACTACGCCGT
TGACAGTTCAGACTGCGCAGCGTTTCGAGTACTGGTCGCTGTGGGAGGCC
GCAATGCAGGACGAATTGAATGGTCACGATGAAACGGAGACTTTCACACC
CATGGTTGCCCCGGAAGGGTCGAACGTTGTATCGGCCAAATGGAGTTTTA
GTTGGAAGGCCAATGAAATCGGGCAAGTTCTTAGGACCAAGGTGAGGCTT
GTTGCTCGCGGATTTAGTCAATCATACAAGGTTAACTTCGATGAGACATT
TGCCCCGACTCCCTCTTCTTCGTCTGTTGAGATAATAGCGGGAGTAGCTA
ACGAGTATCGCCGCCAGATGCGACACTGGGATGTGAAGCAGGCATTTGTG
AGAGCAAATTTACACTTGACATTTTCATGA
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