mRNA_H-elongata_contig137289.2623.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.570e-26 Identity = 52/123 (42.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVA-PEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
P+T + +Y WEAA+++E++GHD+T TFT + PEG + +KW FSWK NE G ++ K R+VARGFSQ ++F + + PS++S++ + VA E +++ HWDVKQA++ A L
Sbjct: 265 PMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKL 387
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.100e-25 Identity = 50/123 (40.65%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVA-PEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
P+T + +Y WEAAM++E++GHD+T TFT + PEG + +KW SWK +E G ++ K R+VARGFSQ ++F + + PS++S++ + A E +++ HWDVKQA++ A L
Sbjct: 108 PMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKL 230
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A0K8TZB9_BACLA (Copia protein n=3 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8TZB9_BACLA) HSP 1 Score: 104 bits (260), Expect = 1.530e-23 Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 52 WEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
WE A+QDEL H E T++ + P+ N+V KW F+ K +E G ++R K RLVARGF+Q Y ++DETFAP SS ++ ++N+Y +M H DVK AF+ L
Sbjct: 858 WEKAIQDELQSHSENNTWSLVAKPDKKNIVDCKWVFTIKQDECGNLVRYKARLVARGFTQEYLTDYDETFAPVARISSFRLMLALSNQYGLKMHHMDVKTAFLNGVL 964
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: UPI001C059F6C (hypothetical protein n=1 Tax=Gluconobacter sp. P5B12 TaxID=2762618 RepID=UPI001C059F6C) HSP 1 Score: 98.6 bits (244), Expect = 2.780e-23 Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
S WE A+ ELN H T+T PE N+V ++W FS K NE+G +R K RLVARGF+Q Y+++++ETFAP SS I + +Y ++ DVK AF+ L
Sbjct: 36 SSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLXIQYNLKVHQMDVKTAFLNGTL 144
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A034VP82_BACDO (Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP82_BACDO) HSP 1 Score: 101 bits (252), Expect = 1.830e-22 Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
+LWE A+QDELN H T+ + P N+V KW FS K +E G +L+ K RLVARGF+Q Y +++DETFAP SS + +N+Y + H DVK AF+ L
Sbjct: 868 TLWEEAIQDELNSHFVNNTWCLVQRPMDKNIVDCKWVFSLKQDENGNLLKYKARLVARGFTQEYMMDYDETFAPVARISSFRFLLAFSNQYNLLIHHMDVKTAFLYGTL 976
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: COPIA_DROME (Copia protein n=6 Tax=cellular organisms TaxID=131567 RepID=COPIA_DROME) HSP 1 Score: 99.0 bits (245), Expect = 1.610e-21 Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
S WE A+ ELN H T+T PE N+V ++W FS K NE+G +R K RLVARGF+Q Y+++++ETFAP SS I + +Y ++ DVK AF+ L
Sbjct: 904 SSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTL 1012
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD) HSP 1 Score: 96.7 bits (239), Expect = 1.040e-20 Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVAPEG--SNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
P T++ A+ W LWE A+Q EL H+ +T+T + P+ +NVVS KW F+ K G + + K RLVARGF+Q Y ++DETF+P ++++ I+ G+A + ++ HWD AF+ L
Sbjct: 953 PATLKQARMRADWPLWEGAIQAELKSHESNKTWTLVDHPQNKATNVVSCKWVFAIKKKADGSLDKYKARLVARGFTQRYGYDYDETFSPVVKATTLRILIGLAAAFDWKIVHWDAVTAFLNGRL 1076
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A6V7KQP7_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7KQP7_9HYME) HSP 1 Score: 95.9 bits (237), Expect = 1.790e-20 Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 52 WEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
WE A++ E++ ET++ + P G N+V KW FS K +E GQ+ + K RLVARGFSQ Y ++DETFAP +S I AN++ + H DVK AF+ NL
Sbjct: 511 WEEAIKAEIDSLLINETWSLVPKPPGKNIVDCKWIFSIKTDEHGQLAKYKARLVARGFSQEYLTDYDETFAPVARIASFRFILAFANQFNLLIHHMDVKMAFLNGNL 617
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA) HSP 1 Score: 95.5 bits (236), Expect = 2.590e-20 Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 7 PLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVAPEG--SNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANLH 375
P T++ A+ W LWE A+Q EL H+ +T+T + P+ +NVVS KW F+ K G + + K RLVARGF+Q Y ++DETF+P ++++ I+ G+A + ++ HWD AF+ + +
Sbjct: 954 PATLKQARMRADWPLWEGAIQAELKSHESNKTWTLVDHPQNKATNVVSCKWVFAIKKKADGSLDKYKARLVARGFTQRYGYDYDETFSPVVKATTLRILIGLAAAFDWKIVHWDAVTAFLNEDAY 1078
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Match: A0A194PHT8_PAPXU (Copia protein n=2 Tax=Papilio TaxID=7145 RepID=A0A194PHT8_PAPXU) HSP 1 Score: 95.5 bits (236), Expect = 2.590e-20 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 46 SLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKWSFSWKANEIGQVLRTKVRLVARGFSQSYKVNFDETFAPTPSSSSVEIIAGVANEYRRQMRHWDVKQAFVRANL 372
S WE A+ DEL H +T+T + P+G N+V KW F+ K +E G+ R K RLVARGFSQ Y ++DETFAP ++ + A ++ + H DVK AF+ L
Sbjct: 613 SQWEGAINDELKSHAINKTWTLVPRPQGKNIVDCKWIFTVKNDEFGKPSRYKARLVARGFSQQYLTDYDETFAPVARIATFRFLMSFAIQHNLLVHHMDVKTAFLNGKL 721 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137289.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137289.2623.1 >prot_H-elongata_contig137289.2623.1 ID=prot_H-elongata_contig137289.2623.1|Name=mRNA_H-elongata_contig137289.2623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp TTPLTVQTAQRFEYWSLWEAAMQDELNGHDETETFTPMVAPEGSNVVSAKback to top mRNA from alignment at H-elongata_contig137289:1124..1513+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137289.2623.1 ID=mRNA_H-elongata_contig137289.2623.1|Name=mRNA_H-elongata_contig137289.2623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig137289:1124..1513+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137289:1124..1513+ >mRNA_H-elongata_contig137289.2623.1 ID=mRNA_H-elongata_contig137289.2623.1|Name=mRNA_H-elongata_contig137289.2623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig137289:1124..1513+ (Himanthalia elongata Himel1 dioecious)back to top |