mRNA_H-elongata_contig137220.2619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137220.2619.1
Unique NamemRNA_H-elongata_contig137220.2619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 7.040e-19
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQAA 156
            YGSVFEAAVD MFR S LT+ HKFLDIGCGIGSIVLQAAAWAGCQAA
Sbjct:  592 YGSVFEAAVDLMFRKSKLTANHKFLDIGCGIGSIVLQAAAWAGCQAA 638          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: A0A6H5KPQ4_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ4_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.580e-13
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   49 MFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQAA 156
            MFR S LT+ HKFLDIGCGIGSIVLQAAAWAGCQAA
Sbjct:    1 MFRNSKLTANHKFLDIGCGIGSIVLQAAAWAGCQAA 36          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: D7FU72_ECTSI (Histone-lysine N-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU72_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.360e-10
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 GMRLRYGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGC------------QAAVRL 165
            G + RYGS+   A D +FR+  LTS   FLDIG G+G IV QAAAWAGC            QAAVRL
Sbjct:   12 GRQGRYGSICAGAADFIFRICGLTSHDCFLDIGSGLGQIVTQAAAWAGCRSLGVEVVRDRHQAAVRL 78          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: A0A6H5KK39_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK39_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.930e-8
Identity = 32/62 (51.61%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGC------------QAAVRL 165
            YGS+   A D +FR+  LT    FLDIG G+G IV QAAAWAGC            QAAVRL
Sbjct:  373 YGSICAGAADFIFRICGLTCHDCFLDIGSGLGQIVTQAAAWAGCKSLGVEVVRDRHQAAVRL 434          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: W7TUH3_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUH3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.040e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 GMRLRYGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQA 153
            GMR  YG++    + +M R + +T + +FLDIG G+G++VLQ AA  GC A
Sbjct:  383 GMRTMYGAIRAPLIQEMIRFAGVTRQDRFLDIGSGLGTVVLQMAAVTGCHA 433          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: I1CNU1_RHIO9 (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CNU1_RHIO9)

HSP 1 Score: 53.5 bits (127), Expect = 7.740e-7
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQA 153
            YG +F + +D+  + + + S   F+D+GCGIG++VLQ AA  GC+A
Sbjct:  153 YGEIFPSLIDEFIKKTQINSNSVFMDLGCGIGNVVLQVAAQTGCKA 198          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: A0A1X2IYU1_9FUNG (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IYU1_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 5.320e-6
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQ 150
            YG +  + V++    +N+TS+  F+D+GCGIG++VLQ AA  GC+
Sbjct:  163 YGEINASLVNEFIAKTNITSKSVFMDLGCGIGNVVLQVAAQTGCE 207          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: A0A163M7B5_ABSGL (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163M7B5_ABSGL)

HSP 1 Score: 51.2 bits (121), Expect = 5.390e-6
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQ 150
            YG +  + V++    +N+TS+  F+D+GCGIG++VLQ AA  GC+
Sbjct:  290 YGEINASLVNEFITKTNMTSKSVFMDLGCGIGNVVLQVAAQTGCE 334          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: A0A1X2G876_9FUNG (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G876_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.350e-5
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQ 150
            YG +    V +    +N+TS+  F+D+GCGIG++VLQ AA  GC+
Sbjct:  125 YGEINAILVREFIEQTNITSKSVFMDLGCGIGNVVLQVAAQTGCE 169          
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Match: I1BTM3_RHIO9 (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BTM3_RHIO9)

HSP 1 Score: 50.1 bits (118), Expect = 1.390e-5
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   16 YGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQA 153
            YG +  + V +    +N+ S+  F+D+GCGIG++VLQ AA  GC+A
Sbjct:  819 YGEINPSLVKEFITKTNINSDSVFMDLGCGIGNVVLQVAAQTGCEA 864          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137220.2619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU81_ECTSI7.040e-1989.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPQ4_9PHAE8.580e-1388.89RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FU72_ECTSI8.360e-1052.24Histone-lysine N-methyltransferase n=1 Tax=Ectocar... [more]
A0A6H5KK39_9PHAE4.930e-851.61DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7TUH3_9STRA6.040e-745.10Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
I1CNU1_RHIO97.740e-743.48Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A1X2IYU1_9FUNG5.320e-644.44Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A163M7B5_ABSGL5.390e-644.44Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A1X2G876_9FUNG1.350e-544.44Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
I1BTM3_RHIO91.390e-543.48Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137220contigH-elongata_contig137220:140..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size168
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.09804-UTR-H-elongata_contig137220:139..1421622929815.09804-UTR-H-elongata_contig137220:139..142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137220 140..142 +
1691679168.1315975-UTR-H-elongata_contig137220:139..1421691679168.1315975-UTR-H-elongata_contig137220:139..142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137220 140..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.1221204-CDS-H-elongata_contig137220:142..3101622929815.1221204-CDS-H-elongata_contig137220:142..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137220 143..310 +
1691679168.1412506-CDS-H-elongata_contig137220:142..3101691679168.1412506-CDS-H-elongata_contig137220:142..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137220 143..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137220.2619.1prot_H-elongata_contig137220.2619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137220 143..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137220.2619.1

>prot_H-elongata_contig137220.2619.1 ID=prot_H-elongata_contig137220.2619.1|Name=mRNA_H-elongata_contig137220.2619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MRLRYGSVFEAAVDQMFRMSNLTSEHKFLDIGCGIGSIVLQAAAWAGCQA
AVRLL*
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mRNA from alignment at H-elongata_contig137220:140..310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137220.2619.1 ID=mRNA_H-elongata_contig137220.2619.1|Name=mRNA_H-elongata_contig137220.2619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig137220:140..310+ (Himanthalia elongata Himel1 dioecious)
GGAATGCGTTTAAGGTACGGATCGGTGTTCGAGGCTGCCGTGGACCAGAT GTTCCGAATGAGCAATCTCACCTCGGAGCACAAGTTCCTCGACATCGGGT GCGGCATAGGTTCCATCGTGCTGCAGGCTGCGGCTTGGGCGGGTTGTCAA GCAGCGGTGAGACTCTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig137220:140..310+

>mRNA_H-elongata_contig137220.2619.1 ID=mRNA_H-elongata_contig137220.2619.1|Name=mRNA_H-elongata_contig137220.2619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig137220:140..310+ (Himanthalia elongata Himel1 dioecious)
ATGCGTTTAAGGTACGGATCGGTGTTCGAGGCTGCCGTGGACCAGATGTT
CCGAATGAGCAATCTCACCTCGGAGCACAAGTTCCTCGACATCGGGTGCG
GCATAGGTTCCATCGTGCTGCAGGCTGCGGCTTGGGCGGGTTGTCAAGCA
GCGGTGAGACTCTTATAAATGCGTTTAAGGTACGGATCGGTGTTCGAGGC
TGCCGTGGACCAGATGTTCCGAATGAGCAATCTCACCTCGGAGCACAAGT
TCCTCGACATCGGGTGCGGCATAGGTTCCATCGTGCTGCAGGCTGCGGCT
TGGGCGGGTTGTCAAGCAGCGGTGAGACTCTTATAA
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