mRNA_H-elongata_contig13688.2598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13688.2598.1
Unique NamemRNA_H-elongata_contig13688.2598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: D7FHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW9_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 3.850e-146
Identity = 298/621 (47.99%), Postives = 351/621 (56.52%), Query Frame = 1
Query:    1 GHSRHAEVAKNLPQNASVYIVAPHELFVANLIPMTFFLLLLAFTDGTSRTAEVLPRSAVAQQAITERVLALDTTAVESYVYDSSLPAFRRCLAPFLGRRRFIATSVGCAVWSVPLGS--MGTRQRFQTSCQKASERKSFDGKLSVRRDHDCPVRRVTEPKPRTRRYK------PG-------------------ERNHPMTRSRGL--LEWNGKRENVHTSESRGG--GNGDSDSAERETERVG------MIDMMVSG--------------------------GAAAFDVTPQIATARRQAARVLATRDLGQAEKDRSALDEMAAEMRSRK--------------------------LKQNIGAEFFPLPTA----EAPTTRPCACARFIGEVGPAPKERGYWFQKENVEDVRARVDALCGDIYRRWRHG-YSPEPEGQD-QDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAKDASKRKGEYLVPPAP 1578
            G +RH  VA  LP+NA+VYIVAPHE FV NLIPMTFFLLLLAFTDGT+RTAEVLPR A+AQ AI   VL LD   VESYVYDSSLP F+R      G R+    S      S   G      R                                V E   R RR +      PG                   ERN+      G   L W   R+  +    RGG  G G  +   RE +  G      + D+ V G                          G AA       +TA R  ++     +      D +A+D+ A    SR+                           ++  G EFFPLPT     + P TRPCACAR+IGE G AP ERGYWF++E VE+ RAR+DALCGD+YRR + G ++ E EG D ++  R+   RLVIYQR+ +RRLLS++  V++   LLG  WE+V IVHDNA EPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWK+GYAPLA+EWGVRHE+IMSRPVSWEKRLALFFVP +RCM+SI CRKWSR ADVRLEEHHLR+IA+AAK ASKRK E+L P AP
Sbjct:   68 GSNRHIHVAPKLPRNATVYIVAPHEEFVPNLIPMTFFLLLLAFTDGTARTAEVLPRRALAQLAIAGDVLVLDNNGVESYVYDSSLPVFQRTQRYQPGERQATRPSRKLTKLSGDSGEDEESPRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAE---RHRRRQLLHGQAPGGSRAADTSNASSGNHLRVLERNYNWEDGEGTRRLAWAPLRDGENGGGVRGGDGGWGREEPVGREAKVYGDGDASVVFDVDVRGEHTGEPTVGGEVAARRALGVAESLAAGMAAGQQLDHGSTAYRDDSQAARAAEASTTAADPNAIDQAAGASLSRRGEAGAQQHERRDDARRAEYQYAARAEAEEVEGPEFFPLPTLAGQRQQPRTRPCACARYIGEFGAAPVERGYWFREEKVENTRARIDALCGDVYRRRQEGRHAAEKEGGDGRESSRKRRQRLVIYQRNDNRRLLSLDDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKRKREFLPPLAP 685          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A6H5L8P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P6_9PHAE)

HSP 1 Score: 438 bits (1126), Expect = 5.940e-137
Identity = 299/671 (44.56%), Postives = 346/671 (51.56%), Query Frame = 1
Query:    7 SRHAEVAKNLPQNASVYIVAPHELFVANLIPMTFFLLLLAFTDGTSRTAEVLPRSAVAQQAITERVLALDTTAVESYVYDSSLPAFRRC-----------------------------------------------------------------------LAPFLGRRRFI---------------ATSV---------------GCAVWSVPLGS-------MGTRQRFQTSCQKASERKSFD-GKLSVRRDHDCPVRRVTEPKPRTRRYKPGERNHPMTRSRGLLEW------NGKRENVHTSESRGGGNGDSDSAERETERVGMIDMMVSGGAAAFDVTPQIATARRQAARVLATRDLGQAEKDRSALDEMAAEMRSRKLKQNI--------------------------GAEFFPLPTA----EAPTTRPCACARFIGEVGPAPKERGYWFQKENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMR--LVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAKDASKRKGEYLVPPAP 1578
            SRH  VA  LPQNA+VYIVAPHELFV NLIPMTFFLLLLAFTDGT+RTAEVLPR A+AQ AI   VLALD   VESYVYDSSLP F+R                                                                        +A    RR+ +               ATS                G   W+ PLG         G    +        E K +D G  SV  D D       EP        P        R  G+ E        G++ +  ++  R  G  D    +R + R       +   AA    T +I TAR   +      +      D +A+D+ A    SR+ K                             G EFFPLPT     + P TRPCACAR+IGE G AP ERGYWF++E VE+ RAR+DALCGD+YRR                         LVIYQR+ DRRLLS++  V++   LLG  WE+V IVHDNA EPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWK+GYAPLA+EWGVRHE+IMSRPVSWEKRLALFFVP +RCM+SI CRKWSR ADVRLEEHHLR+IA+AAK ASKRK E+L PPAP
Sbjct:  101 SRHTHVAPKLPQNATVYIVAPHELFVPNLIPMTFFLLLLAFTDGTARTAEVLPRRALAQLAIAGDVLALDNNGVESYVYDSSLPVFQRTQRYQPGEREAARPSRKLTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQRYRRRQLLHGQAPGGSGAADTSNATSGNHLRLPERNYNWEDNGRLAWA-PLGDGENGGEVTGGEGGWGREEPVGREAKVYDDGDASVVFDFDVGGDHTGEP--------PVGGEIAARRVLGVAESLAAGMAAGQQLDQGSTAYRDAGRTDGSGRDRSSLRYNRGPPELDNAAA----TSRILTARLDDSPAARAAEASTTAADPNAIDQAAGASVSRRRKAGAQQHGRRDDARRAEYQYAARAEAEEVEGPEFFPLPTLAGQRQQPRTRPCACARYIGEFGAAPVERGYWFREEKVENTRARIDALCGDVYRRXXXXXXXXXXXXXXXXXXXXXXXXXLVIYQRNHDRRLLSLDDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKRKREFLSPPAP 758          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A7S2HI54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HI54_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.380e-44
Identity = 100/263 (38.02%), Postives = 140/263 (53.23%), Query Frame = 1
Query:  871 PCACARFIGEVGPAPKERGYWFQKEN-VEDVRARVDALC------GDIYRR----------------------------WRHGYSPEPEGQ-----DQDLGRRSGM-RLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIM-SRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAK 1533
            PC+CA+FIGE G AP ERGYWF+  + V   R R+  LC      GDI +                             W  G+     G        D   R  M +L+IYQRD+DRRL   E +   L + LG  W +  ++H   L+PC L+ +L   D+LLTPHGFQS+LL+F+  G+ + EVFP+KYWK GY P A E+G+ H +   SR  SW K +AL  +  +RCM SI CR ++R  +V +++  L K+ + A+
Sbjct:   27 PCSCAKFIGEFGGAPIERGYWFESSHAVNATRERIRKLCSWFPSTGDIRQPQEDPQFATVTTSLSSDQSILSHDFLNQLWYRGHRGAVSGDKATRTSHDSPPRQPMHQLIIYQRDRDRRLELHEVLRKNLRKRLGKTWNVTVVMHKENLDPCGLWEELRVTDLLLTPHGFQSILLIFMRRGSALFEVFPFKYWKIGYRPFANEYGLWHGWSQNSRATSWVKNVALSLISQERCMHSIDCRLYARQDNVYIDDSSLLKVVKLAR 289          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A7S3XXH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXH4_HETAK)

HSP 1 Score: 176 bits (445), Expect = 5.240e-43
Identity = 92/224 (41.07%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  874 CACARFIGEVGPAPKERGYWFQKEN-VEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGM---RLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAK 1533
            CACARF+GE GPAP ERGYWF  +  V   R R+  +C   +     G  P P  +  +          ++V+YQR+++R+    E +V  L E LG +WEL  ++H     PC +Y     AD+  T HGFQ++ +LF+PPG  + EVFPYKYWK GYAPL RE G+ H + MS P     R  L  VP   C  S  CR ++R ADV + E  LR++  ++K
Sbjct:  232 CACARFLGEFGPAPVERGYWFGGDREVRAARGRMAVMCD--HESGAAGGRPLPADEAAEAAXXXXPPKHKMVVYQRNRNRKFQRFEAMVEALEEQLGPEWELEVLLHSTDRHPCAMYESFHAADVFYTAHGFQTIAVLFMPPGGLVYEVFPYKYWKVGYAPLVREVGLTHHWAMSPPAGPVHRALLAAVPLSVCSLSYRCRLFARDADVVVGEAALRRVVVSSK 453          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A7S3GPP9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GPP9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.170e-34
Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1
Query:  880 CARFIGEVGPA--PKERGYWFQKENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSML-GELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKI 1518
            CAR++G +G      +RG+WF   N  D+ +  D L        R     +P+   Q   ++   ++V+YQRD  R+L + E  V+ML  +L  SDW++  ++H  +  PC L   L + D+LLTPHGFQSMLLLFLP    + E+FP KY+K GY P   E+GV H   MS    + ++L L +V S  CM S  CR ++R  DV L +H +  +
Sbjct:   37 CARYMGSIGGTWPTVQRGHWFP--NPGDIESFRDTL--------RTACPADPQLLKQ-TAKKKKYKMVLYQRDLSRKLANQEEAVAMLRSKLSESDWDIEILMHKTSRSPCTLMHHLYNTDILLTPHGFQSMLLLFLPRPGLMFEIFPEKYYKRGYGPFGAEYGVTHGGTMSPSTGYYQQLVLPYVSSAYCMESKFCRGFARNQDVILTKHGVNNL 241          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.610e-34
Identity = 82/220 (37.27%), Postives = 123/220 (55.91%), Query Frame = 1
Query:  862 TTRPCACARFIGEVGPAPKERGYWFQK-ENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKI 1518
            + R   C +++  VG +  +R  WF   E+   +R  +DA C   + R + G   E EG           RL++YQRD++R++L  + +V  L E LG  W +  ++HD+   PC L   L   D+LLTPHGFQSML LF+ PG+ + EVFP KY+K GYAP+A    VRH Y MSR +     +   +  ++ CM+   CR ++R +DV L+E  L ++
Sbjct:  200 SAREPVCVKYLDTVGESVVQRSEWFPSPEDAASLRRAIDAYCPLSFLRSQEG---EEEGV---------RRLLLYQRDQNRQILHADKVVEDLQERLGGGWIVNMMMHDSDRHPCVLVETLAGVDVLLTPHGFQSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGLDVRHAYSMSRAL--RPMMGHSYPSTETCMKWYLCRWYARSSDVELDEESLERL 405          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A6H5JWT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.650e-31
Identity = 86/242 (35.54%), Postives = 122/242 (50.41%), Query Frame = 1
Query:  853 EAPTTRPCACARFIGEVGPAPKERGYWFQK-ENVEDVRARVDALC--------------GDIYRRWRHGYSPEPEGQDQDLGRRSGMR-LVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAA 1530
            E  T R   C +++  VG       +WF   E+    R  ++  C              GD +RR         EG   + G   G+R L++YQRD+ RR+ +   ++  L E LG DW +  ++HD   +PC L   +   D+LLTPHGFQSML LFL PGA + EVFP+KY+   YA +    GVRH + MSR   +  R A     ++ CMR   CR +SR  DV +EE  L ++ + A
Sbjct:  288 ECDTPREPVCVKYLNTVGRKKVSTEHWFPSPEDARSFRTAINTFCPMPFLRGAEEAGAGGDRHRR--------VEGDGWEGGGEGGVRRLLLYQRDQCRRIKNAAQVMEDLRERLGGDWLVEEMIHDADRQPCELVKTVGGVDVLLTPHGFQSMLGLFLRPGALLFEVFPHKYFWGQYAAMVEGLGVRHAWSMSRSGRFFMRFA--HPTTETCMRYKRCRAYSRNTDVEIEEQDLERLVKLA 519          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A482RTA3_9ARCH (DUF563 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTA3_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 2.360e-27
Identity = 59/141 (41.84%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 1069 RLVIYQRDKDRRLLSMEGIVSMLGELL-GSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADV 1488
            +LVIYQRD  R+LL  + ++ ML   L  S WE+  ++H     PC L+       +LLTPHGFQSMLLL +PP + + EVFP++Y+K  Y+P   E GV H  +MS P  W   L + +V +  C ++  CR  +R  DV
Sbjct:   13 KLVIYQRDLSRKLLKQDNVLQMLHSRLDNSKWEVEVVMHIPDRSPCTLHPLFAQTTLLLTPHGFQSMLLLLMPPSSLLFEVFPFRYYKPAYSPFGAEMGVHHGGVMSPPTYWLYGLLMQYVTTPWCTQTKMCRVNARDQDV 153          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.430e-26
Identity = 66/149 (44.30%), Postives = 96/149 (64.43%), Query Frame = 1
Query: 1069 RLVIYQRDKDRRLLSMEGIVSMLGELLGS-DWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPS-DRCMRSISCRKWSRGADVRLEEHHL 1509
            +LVIYQRD+DR+LL  E ++  L   LG   W +  I+HD+   PC L  +L  AD+LLT HGFQSML LF+ PG+ + EV+P+KY+K GYAP+A+  G+R+ Y  S P+      A +  PS ++CM+   CR++ R +DV + E  +
Sbjct:  302 KLVIYQRDRDRKLLKTEELMDELWIRLGHLGWAVKEIIHDDERHPCELVQELAGADILLTAHGFQSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPPLL---PFAFWSWPSVEQCMKWYVCRRYMRSSDVVITEDSI 447          
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: D8LD62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD62_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.600e-26
Identity = 65/167 (38.92%), Postives = 98/167 (58.68%), Query Frame = 1
Query:  853 EAPTTRPCACARFIGEVGPAPKERGYWFQK-ENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLA 1350
            E  + R   C +++  VG +  +R  WF   E+   +R  +DA C   + R     S E EG+++ +      R+++YQRD++R++L  + +V  L E LG  W +  ++HD+   PC L   L   D+LLTPHGFQSML LF+ PG+ + EVFP KY+K GYAP+A
Sbjct:  212 EETSAREPVCVKYLDTVGESVVQRSEWFPSPEDAASLRRAIDAYCPLSFLR-----SEEGEGEEEGV-----RRVLLYQRDQNRQILHADKVVEDLQERLGGGWIVDMMMHDSDRHPCELVETLAGVDVLLTPHGFQSMLGLFMRPGSLLFEVFPQKYFKAGYAPMA 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FHW9_ECTSI3.850e-14647.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8P6_9PHAE5.940e-13744.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2HI54_9STRA1.380e-4438.02Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XXH4_HETAK5.240e-4341.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GPP9_9STRA4.170e-3437.96Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5K1S1_9PHAE4.610e-3437.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWT6_9PHAE8.650e-3135.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RTA3_9ARCH2.360e-2741.84DUF563 domain-containing protein (Fragment) n=1 Ta... [more]
D7FGW3_ECTSI1.430e-2644.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD62_ECTSI2.600e-2638.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13688contigH-elongata_contig13688:1341..5587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D7FGW3
EggNOG OGs2C9EE@1,2SQH4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionGlycosyltransferase AER61, uncharacterised
Ec32 orthologEc-12_006190.1
Exons5
Model size2910
Cds size1515
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.7663403-UTR-H-elongata_contig13688:1340..14391622929812.7663403-UTR-H-elongata_contig13688:1340..1439Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13688 1341..1439 +
1691679167.1916077-UTR-H-elongata_contig13688:1340..14391691679167.1916077-UTR-H-elongata_contig13688:1340..1439Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13688 1341..1439 +
1622929812.9625635-UTR-H-elongata_contig13688:4291..55871622929812.9625635-UTR-H-elongata_contig13688:4291..5587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13688 4292..5587 +
1691679167.2495902-UTR-H-elongata_contig13688:4291..55871691679167.2495902-UTR-H-elongata_contig13688:4291..5587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13688 4292..5587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.7849154-CDS-H-elongata_contig13688:1439..16131622929812.7849154-CDS-H-elongata_contig13688:1439..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 1440..1613 +
1691679167.207311-CDS-H-elongata_contig13688:1439..16131691679167.207311-CDS-H-elongata_contig13688:1439..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 1440..1613 +
1622929812.806201-CDS-H-elongata_contig13688:1810..25881622929812.806201-CDS-H-elongata_contig13688:1810..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 1811..2588 +
1691679167.218141-CDS-H-elongata_contig13688:1810..25881691679167.218141-CDS-H-elongata_contig13688:1810..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 1811..2588 +
1622929812.8192444-CDS-H-elongata_contig13688:2875..30771622929812.8192444-CDS-H-elongata_contig13688:2875..3077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 2876..3077 +
1691679167.226227-CDS-H-elongata_contig13688:2875..30771691679167.226227-CDS-H-elongata_contig13688:2875..3077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 2876..3077 +
1622929812.9013484-CDS-H-elongata_contig13688:3508..36891622929812.9013484-CDS-H-elongata_contig13688:3508..3689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 3509..3689 +
1691679167.234297-CDS-H-elongata_contig13688:3508..36891691679167.234297-CDS-H-elongata_contig13688:3508..3689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 3509..3689 +
1622929812.9463136-CDS-H-elongata_contig13688:4111..42911622929812.9463136-CDS-H-elongata_contig13688:4111..4291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 4112..4291 +
1691679167.241984-CDS-H-elongata_contig13688:4111..42911691679167.241984-CDS-H-elongata_contig13688:4111..4291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13688 4112..4291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13688.2598.1prot_H-elongata_contig13688.2598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13688 1440..4291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13688.2598.1

>prot_H-elongata_contig13688.2598.1 ID=prot_H-elongata_contig13688.2598.1|Name=mRNA_H-elongata_contig13688.2598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=505bp
MTFFLLLLAFTDGTSRTAEVLPRSAVAQQAITERVLALDTTAVESYVYDS
SLPAFRRCLAPFLGRRRFIATSVGCAVWSVPLGSMGTRQRFQTSCQKASE
RKSFDGKLSVRRDHDCPVRRVTEPKPRTRRYKPGERNHPMTRSRGLLEWN
GKRENVHTSESRGGGNGDSDSAERETERVGMIDMMVSGGAAAFDVTPQIA
TARRQAARVLATRDLGQAEKDRSALDEMAAEMRSRKLKQNIGAEFFPLPT
AEAPTTRPCACARFIGEVGPAPKERGYWFQKENVEDVRARVDALCGDIYR
RWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELL
GSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATI
LEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMR
SISCRKWSRGADVRLEEHHLRKIARAAKDASKRKGEYLVPPAPVAPGSSE
RRRR*
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mRNA from alignment at H-elongata_contig13688:1341..5587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13688.2598.1 ID=mRNA_H-elongata_contig13688.2598.1|Name=mRNA_H-elongata_contig13688.2598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4247bp|location=Sequence derived from alignment at H-elongata_contig13688:1341..5587+ (Himanthalia elongata Himel1 dioecious)
GGTCACAGCCGACACGCGGAGGTGGCAAAGAATCTCCCCCAAAACGCCTC CGTCTACATCGTTGCGCCTCACGAGCTGTTTGTGGCGAACCTGATCCCCA TGACCTTTTTTTTGCTGCTTCTGGCCTTCACCGATGGCACGTCGCGGACG GCCGAGGTGTTGCCGCGCAGTGCGGTGGCACAGCAGGCGATCACTGAGAG AGTCCTAGCGCTTGATACCACCGCGGTGGAGTCTTACGTGTACGATAGCT CTCTCCCTGCGTTCCGAAGGTGCGTTAGGCCGCTGCAGCGCTTTTATTGG GACAAGGGTGTGTGAGGGGGGAAGAATCAAACTATGGGGCAACCATTTTT TACGACGTGTGCTCTCGCCTTCCTAGGCGTTTGACTCCTTGACGCTATTT TTGCGTGCGCTCATAATCCACAGGGAGATTCATTAACCCGAAGTTGTTGA GAGGGGGCTTGTCTATCAAGTTAGCGCCTTTTTTAGGGAGGCGGCGATTC ATCGCGACCAGCGTTGGCTGCGCTGTGTGGAGTGTTCCATTAGGGTCGAT GGGTACTCGTCAGCGATTTCAAACGAGTTGTCAAAAAGCTTCCGAGCGGA AATCCTTTGATGGAAAACTCTCTGTCCGAAGGGATCATGACTGTCCTGTC CGCCGCGTCACCGAACCGAAACCTAGGACAAGGCGATACAAGCCAGGGGA ACGGAACCACCCCATGACACGGTCCCGAGGGCTATTGGAGTGGAACGGCA AAAGGGAGAACGTACATACAAGCGAAAGTCGCGGGGGTGGTAACGGAGAC AGCGACAGTGCTGAGCGAGAGACCGAACGCGTGGGGATGATCGACATGAT GGTTTCCGGTGGCGCCGCTGCTTTTGATGTAACTCCCCAGATCGCCACAG CCCGACGACAAGCCGCGCGCGTTCTTGCGACTCGAGACCTTGGACAGGCA GAGAAGGACAGGTCGGCGCTGGATGAGATGGCAGCAGAGATGCGCAGCCG AAAGCTAAAGCAAAACATCGGGGCGGAGTTCTTTCCTCTGCCGACGGCGG AGGCGCCAACCACCCGGCCTTGTGCTTGTGCCCGTTTCATCGGCGAGGTT GGCCCGGCCCCGAAAGAACGAGGGTATTGGTTTCAGAAAGAAAACGTCGA GGACGTTCGGGCTCGGGTAGATGCGCTTTGCGGTGACATCTACCGGCGAT GGCGGCACGGTTACTCACCTGAGCCTGAGGGACAGGATCAGGATCTGGGT GGAGCAACGAAAAGCGGGTGCGCCGGGACGAAATCAATTCCGTTTTTGAC GTCGTGCATCGACTTTGGGTGTTTTAGAGTTTTCCACTTAGCGAGCTCGA GAGCGTTGGCCGAACATGAATTATATGGCTTGGGAATGTAACATAGCGCG TTACTTAAAAGCGCCTCATGCGTGCCTAAAGCGTTTTCATTATTTAAGTC GCCTCTCTTCTAAATTTCACTCTTCCTCTTCGTCGCGGGATAAACTTTCG CTTTAGTATGAGCGATGAGTTTTGGGGCCATGTAGGCAGGAGATCAGGAA TGCGGCTGGTGATCTATCAGAGGGATAAAGATCGACGTCTTTTGTCGATG GAAGGCATCGTGAGCATGCTTGGAGAGTTACTTGGGTCCGACTGGGAGCT GGTGACGATTGTACACGACAACGCGCTCGAGCCATGCTGGCTGTACTCGC AACTGATGGATGCCGACATGCTCCTTACTCCGCACGGGTGCGCGTCGCTA GACCCTTGATGCTTATCCGAGTTGCCATGCCGATTAACATGTATTTAGTG TCTGAACTGTGTCGACACTACTTCGCTCTGACGGTGGTGCCATTTCCAGT ATGCGGGAGGAGGCGTAGATTGGGGGGAGGGGGTGAAATTGAGTCCCGCG GGGGCAACTAAACTTCTGAAGGTCCACAAGTCATGTCTCCCGCTTACTTC GCCTTCCTACGTACGCTGTGCTTCCCCCCCACCCCCAGACTCCATCCCCA GCCGCCGCCTTCATTGTGCTGGAAATTACCTCCCCGCCCAGGGGCAAAAC TCCGAAAGGTGGAACCTCTTAAAGAAAAAAAGGCAGAGGGGGGGGGGGGC AGGTGGGTGGCTGTGGACAGTATTTTTCCTAATAAGCATATTTCGCTTTC TCCTTGGCGCGCGCGCAGATTCCAGTCGATGCTTCTCTTGTTTCTTCCCC CGGGGGCAACCATCCTCGAGGTATTTCCGTATAAATACTGGAAAGATGGC TACGCGCCACTGGCGCGAGAATGGGGGGTGCGACACGAGTATATCATGTC TCGGCCGGTTTCTTGGGAGAAGCGACTGGCGCTATTCTTTGTACCTTCGG TGAGTGGACGCGTTCCTCGTTTATCGCGCGCCATTTTTTAGACGGTGTCC CGCGCTCGGAAGGCAGTGCGCCGCTTTAAAAGCTCATGATCGGGTCATGC TTCCGGTTCGTCATCCCTTCCTGCAGCGAGATGTGCGGTAGTGCGGACTA TCGTATAAATCTTGCCTGTTTTCTGCGACGGTTGTAAAATTTATCGTCAC CCTCCGCGGTAAACATTCTGGCCACGAAAAATATTTCCTATATTTTCCTC CCATCTCAATAGTCACCTCAACGGGCGTGCAAACCTCTATGTAGTTCTCA ATGAGCAGTAGCTAACAACCTCTTTAATTGGCCCCTGAGGAACCTCGAAT CGAAATTCTACTCGAGGCATGTCATAACGCTTGTAATCCTTAGGGTTATG GTTGCGGTGCCCAAACGGCAGGATCGCTGCATGAGGAGCATTAGCTGTCG CAAGTGGAGCCGCGGTGCTGATGTTCGGCTAGAAGAGCACCATCTTCGAA AAATTGCAAGAGCCGCCAAGGACGCCTCCAAGCGCAAAGGGGAGTATCTC GTGCCACCGGCGCCAGTTGCCCCTGGGAGCTCTGAGCGGCGAAGGCGGTG ACTTGTAAGGGCTTCATTCTGTACCGTCTGTCTATAGACAAATGAGTGGT TGCAAGGATGTGACCTTTAGAAGGATTGCCGTTCCTGTGGACACTTCCTG TGAATCACGAGAGAGAACGCATCGGTGTGTGTCCTTGGTGGTTTTTTGCA CGTGTTACGTATTTGTACGTCGGTCGGTATCGTTTAAGCGACTCCTTTAG ATCTTAAGGTCTTTAGCGGAAATGGAAACCAGGTGTGTGGTGTGTCGAAA TGAAAAGAAAAAAGAAAAACTTGCGCAGGTCTAAGAGGGAACAATATTAA TTGTGAAATCTTCGAGGAAGGCGGCCGAATTATTTTGCAGGCGTGCGCCG TGATCATGCATTTTTCTTGAACGTTCATTTTTATTTTATTTTTTTTCATG AGTGGTGATAATTTTGTCTTGTAAATATCGTCGTCGTATGGTGATAGAGT GCGAGGGCTCCTCCGTCCTCAGCTGCAGTACGCCTGCTGCCCTGTTTTTT TCTTGCGGGTGCGCTTGTACCTTTATACCTTTATTTGATGTCGCATGGGC TCCGCGTTTGTAGCCGGGCCCTATTGATCGAGTTTCATCCTCCCCTTTTA GTGTTGTGCGTGCGTGGGCTTGGTTCGTAATTGCTGCGTGATGGGTGTGT CCTTCTGCTGCCCACGCGAAGGCTTCCAACCTTGCGTGGTTTGGTGGTGG CGTATTTTCGTCTGTGTCTTTGTGACTGTTATGGGTATGTTTTTTTTCCG TGTTCGCATCTTGAGAATTTCTAGCGTATTTTGATTCCGTGAAAGAGTTT TAACCCCTATGGAACTCGGGTCTGTTTTTTACATTCTAAATGTATAATAA AAATTAAAATCCAGTTCCAAAAGAGTTGAGTGTATCCTGTGGCGAAGATT GAGTGGGCGGTGTTTAGAATTACTCCTCTACGTATTCTGAGACGTAAAAT AAATATAGGTGTGGTGGGAACGAGCAGGTGACGAGCCGTACCGATGTAAC CTCGCCATTGCCATTCAAGTGATGCTACATCTTGAGTGCCTGATTCAAGA CTTTTCGAGCACGGGACGGCCTCAGCCTTCCCCCTAGTCGATGGCAAAAT GTTTTACGCACAGCTGTTGAGTATACGACCTACCGCCGGAGAACACTCAA CTGTTGACACCCCCGTTTGAACAAAATCAGACAAAATAGTTGGAACGTTG GGATGGACAACTAACTTACTACCCTTCGTGCGTCCCTCTGCCCCCATACT TATTTGGCTAGTTTCATTGTCATCACGCCCCCTTTAGGGTTTCCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig13688:1341..5587+

>mRNA_H-elongata_contig13688.2598.1 ID=mRNA_H-elongata_contig13688.2598.1|Name=mRNA_H-elongata_contig13688.2598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3030bp|location=Sequence derived from alignment at H-elongata_contig13688:1341..5587+ (Himanthalia elongata Himel1 dioecious)
ATGACCTTTTTTTTGCTGCTTCTGGCCTTCACCGATGGCACGTCGCGGAC
GGCCGAGGTGTTGCCGCGCAGTGCGGTGGCACAGCAGGCGATCACTGAGA
GAGTCCTAGCGCTTGATACCACCGCGGTGGAGTCTTACGTGTACGATAGC
TCTCTCCCTGCGTTCCGAAGGTGCATGACCTTTTTTTTGCTGCTTCTGGC
CTTCACCGATGGCACGTCGCGGACGGCCGAGGTGTTGCCGCGCAGTGCGG
TGGCACAGCAGGCGATCACTGAGAGAGTCCTAGCGCTTGATACCACCGCG
GTGGAGTCTTACGTGTACGATAGCTCTCTCCCTGCGTTCCGAAGGTGCTT
AGCGCCTTTTTTAGGGAGGCGGCGATTCATCGCGACCAGCGTTGGCTGCG
CTGTGTGGAGTGTTCCATTAGGGTCGATGGGTACTCGTCAGCGATTTCAA
ACGAGTTGTCAAAAAGCTTCCGAGCGGAAATCCTTTGATGGAAAACTCTC
TGTCCGAAGGGATCATGACTGTCCTGTCCGCCGCGTCACCGAACCGAAAC
CTAGGACAAGGCGATACAAGCCAGGGGAACGGAACCACCCCATGACACGG
TCCCGAGGGCTATTGGAGTGGAACGGCAAAAGGGAGAACGTACATACAAG
CGAAAGTCGCGGGGGTGGTAACGGAGACAGCGACAGTGCTGAGCGAGAGA
CCGAACGCGTGGGGATGATCGACATGATGGTTTCCGGTGGCGCCGCTGCT
TTTGATGTAACTCCCCAGATCGCCACAGCCCGACGACAAGCCGCGCGCGT
TCTTGCGACTCGAGACCTTGGACAGGCAGAGAAGGACAGGTCGGCGCTGG
ATGAGATGGCAGCAGAGATGCGCAGCCGAAAGCTAAAGCAAAACATCGGG
GCGGAGTTCTTTCCTCTGCCGACGGCGGAGGCGCCAACCACCCGGCCTTG
TGCTTGTGCCCGTTTCATCGGCGAGGTTGGCCCGGCCCCGAAAGAACGAG
GGTATTGGTTTCAGAAAGAAAACGTCGAGGACGTTCGGGCTCGGGTAGAT
GCGCTTTGCGGTGACATCTACCGGCGATGGCGGCACGGTTACTCACCTGA
GCCTGAGGGACAGGATCAGGATCTGGTTAGCGCCTTTTTTAGGGAGGCGG
CGATTCATCGCGACCAGCGTTGGCTGCGCTGTGTGGAGTGTTCCATTAGG
GTCGATGGGTACTCGTCAGCGATTTCAAACGAGTTGTCAAAAAGCTTCCG
AGCGGAAATCCTTTGATGGAAAACTCTCTGTCCGAAGGGATCATGACTGT
CCTGTCCGCCGCGTCACCGAACCGAAACCTAGGACAAGGCGATACAAGCC
AGGGGAACGGAACCACCCCATGACACGGTCCCGAGGGCTATTGGAGTGGA
ACGGCAAAAGGGAGAACGTACATACAAGCGAAAGTCGCGGGGGTGGTAAC
GGAGACAGCGACAGTGCTGAGCGAGAGACCGAACGCGTGGGGATGATCGA
CATGATGGTTTCCGGTGGCGCCGCTGCTTTTGATGTAACTCCCCAGATCG
CCACAGCCCGACGACAAGCCGCGCGCGTTCTTGCGACTCGAGACCTTGGA
CAGGCAGAGAAGGACAGGTCGGCGCTGGATGAGATGGCAGCAGAGATGCG
CAGCCGAAAGCTAAAGCAAAACATCGGGGCGGAGTTCTTTCCTCTGCCGA
CGGCGGAGGCGCCAACCACCCGGCCTTGTGCTTGTGCCCGTTTCATCGGC
GAGGTTGGCCCGGCCCCGAAAGAACGAGGGTATTGGTTTCAGAAAGAAAA
CGTCGAGGACGTTCGGGCTCGGGTAGATGCGCTTTGCGGTGACATCTACC
GGCGATGGCGGCACGGTTACTCACCTGAGCCTGAGGGACAGGATCAGGAT
CTGGGCAGGAGATCAGGAATGCGGCTGGTGATCTATCAGAGGGATAAAGA
TCGACGTCTTTTGTCGATGGAAGGCATCGTGAGCATGCTTGGAGAGTTAC
TTGGGTCCGACTGGGAGCTGGTGACGATTGTACACGACAACGCGCTCGAG
CCATGCTGGCTGTACTCGCAACTGATGGATGCCGACATGCTCCTTACTCC
GCACGGGCAGGAGATCAGGAATGCGGCTGGTGATCTATCAGAGGGATAAA
GATCGACGTCTTTTGTCGATGGAAGGCATCGTGAGCATGCTTGGAGAGTT
ACTTGGGTCCGACTGGGAGCTGGTGACGATTGTACACGACAACGCGCTCG
AGCCATGCTGGCTGTACTCGCAACTGATGGATGCCGACATGCTCCTTACT
CCGCACGGATTCCAGTCGATGCTTCTCTTGTTTCTTCCCCCGGGGGCAAC
CATCCTCGAGGTATTTCCGTATAAATACTGGAAAGATGGCTACGCGCCAC
TGGCGCGAGAATGGGGGGTGCGACACGAGTATATCATGTCTCGGCCGGTT
TCTTGGGAGAAGCGACTGGCGCTATTCTTTGTACCTTCGATTCCAGTCGA
TGCTTCTCTTGTTTCTTCCCCCGGGGGCAACCATCCTCGAGGTATTTCCG
TATAAATACTGGAAAGATGGCTACGCGCCACTGGCGCGAGAATGGGGGGT
GCGACACGAGTATATCATGTCTCGGCCGGTTTCTTGGGAGAAGCGACTGG
CGCTATTCTTTGTACCTTCGGATCGCTGCATGAGGAGCATTAGCTGTCGC
AAGTGGAGCCGCGGTGCTGATGTTCGGCTAGAAGAGCACCATCTTCGAAA
AATTGCAAGAGCCGCCAAGGACGCCTCCAAGCGCAAAGGGGAGTATCTCG
TGCCACCGGCGCCAGTTGCCCCTGGGAGCTCTGAGCGGCGAAGGCGGTGA
GATCGCTGCATGAGGAGCATTAGCTGTCGCAAGTGGAGCCGCGGTGCTGA
TGTTCGGCTAGAAGAGCACCATCTTCGAAAAATTGCAAGAGCCGCCAAGG
ACGCCTCCAAGCGCAAAGGGGAGTATCTCGTGCCACCGGCGCCAGTTGCC
CCTGGGAGCTCTGAGCGGCGAAGGCGGTGA
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