mRNA_H-elongata_contig13688.2598.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: D7FHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW9_ECTSI) HSP 1 Score: 459 bits (1182), Expect = 3.850e-146 Identity = 298/621 (47.99%), Postives = 351/621 (56.52%), Query Frame = 1
Query: 1 GHSRHAEVAKNLPQNASVYIVAPHELFVANLIPMTFFLLLLAFTDGTSRTAEVLPRSAVAQQAITERVLALDTTAVESYVYDSSLPAFRRCLAPFLGRRRFIATSVGCAVWSVPLGS--MGTRQRFQTSCQKASERKSFDGKLSVRRDHDCPVRRVTEPKPRTRRYK------PG-------------------ERNHPMTRSRGL--LEWNGKRENVHTSESRGG--GNGDSDSAERETERVG------MIDMMVSG--------------------------GAAAFDVTPQIATARRQAARVLATRDLGQAEKDRSALDEMAAEMRSRK--------------------------LKQNIGAEFFPLPTA----EAPTTRPCACARFIGEVGPAPKERGYWFQKENVEDVRARVDALCGDIYRRWRHG-YSPEPEGQD-QDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAKDASKRKGEYLVPPAP 1578
G +RH VA LP+NA+VYIVAPHE FV NLIPMTFFLLLLAFTDGT+RTAEVLPR A+AQ AI VL LD VESYVYDSSLP F+R G R+ S S G R V E R RR + PG ERN+ G L W R+ + RGG G G + RE + G + D+ V G G AA +TA R ++ + D +A+D+ A SR+ ++ G EFFPLPT + P TRPCACAR+IGE G AP ERGYWF++E VE+ RAR+DALCGD+YRR + G ++ E EG D ++ R+ RLVIYQR+ +RRLLS++ V++ LLG WE+V IVHDNA EPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWK+GYAPLA+EWGVRHE+IMSRPVSWEKRLALFFVP +RCM+SI CRKWSR ADVRLEEHHLR+IA+AAK ASKRK E+L P AP
Sbjct: 68 GSNRHIHVAPKLPRNATVYIVAPHEEFVPNLIPMTFFLLLLAFTDGTARTAEVLPRRALAQLAIAGDVLVLDNNGVESYVYDSSLPVFQRTQRYQPGERQATRPSRKLTKLSGDSGEDEESPRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAE---RHRRRQLLHGQAPGGSRAADTSNASSGNHLRVLERNYNWEDGEGTRRLAWAPLRDGENGGGVRGGDGGWGREEPVGREAKVYGDGDASVVFDVDVRGEHTGEPTVGGEVAARRALGVAESLAAGMAAGQQLDHGSTAYRDDSQAARAAEASTTAADPNAIDQAAGASLSRRGEAGAQQHERRDDARRAEYQYAARAEAEEVEGPEFFPLPTLAGQRQQPRTRPCACARYIGEFGAAPVERGYWFREEKVENTRARIDALCGDVYRRRQEGRHAAEKEGGDGRESSRKRRQRLVIYQRNDNRRLLSLDDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKRKREFLPPLAP 685
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A6H5L8P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P6_9PHAE) HSP 1 Score: 438 bits (1126), Expect = 5.940e-137 Identity = 299/671 (44.56%), Postives = 346/671 (51.56%), Query Frame = 1
Query: 7 SRHAEVAKNLPQNASVYIVAPHELFVANLIPMTFFLLLLAFTDGTSRTAEVLPRSAVAQQAITERVLALDTTAVESYVYDSSLPAFRRC-----------------------------------------------------------------------LAPFLGRRRFI---------------ATSV---------------GCAVWSVPLGS-------MGTRQRFQTSCQKASERKSFD-GKLSVRRDHDCPVRRVTEPKPRTRRYKPGERNHPMTRSRGLLEW------NGKRENVHTSESRGGGNGDSDSAERETERVGMIDMMVSGGAAAFDVTPQIATARRQAARVLATRDLGQAEKDRSALDEMAAEMRSRKLKQNI--------------------------GAEFFPLPTA----EAPTTRPCACARFIGEVGPAPKERGYWFQKENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMR--LVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAKDASKRKGEYLVPPAP 1578
SRH VA LPQNA+VYIVAPHELFV NLIPMTFFLLLLAFTDGT+RTAEVLPR A+AQ AI VLALD VESYVYDSSLP F+R +A RR+ + ATS G W+ PLG G + E K +D G SV D D EP P R G+ E G++ + ++ R G D +R + R + AA T +I TAR + + D +A+D+ A SR+ K G EFFPLPT + P TRPCACAR+IGE G AP ERGYWF++E VE+ RAR+DALCGD+YRR LVIYQR+ DRRLLS++ V++ LLG WE+V IVHDNA EPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWK+GYAPLA+EWGVRHE+IMSRPVSWEKRLALFFVP +RCM+SI CRKWSR ADVRLEEHHLR+IA+AAK ASKRK E+L PPAP
Sbjct: 101 SRHTHVAPKLPQNATVYIVAPHELFVPNLIPMTFFLLLLAFTDGTARTAEVLPRRALAQLAIAGDVLALDNNGVESYVYDSSLPVFQRTQRYQPGEREAARPSRKLTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQRYRRRQLLHGQAPGGSGAADTSNATSGNHLRLPERNYNWEDNGRLAWA-PLGDGENGGEVTGGEGGWGREEPVGREAKVYDDGDASVVFDFDVGGDHTGEP--------PVGGEIAARRVLGVAESLAAGMAAGQQLDQGSTAYRDAGRTDGSGRDRSSLRYNRGPPELDNAAA----TSRILTARLDDSPAARAAEASTTAADPNAIDQAAGASVSRRRKAGAQQHGRRDDARRAEYQYAARAEAEEVEGPEFFPLPTLAGQRQQPRTRPCACARYIGEFGAAPVERGYWFREEKVENTRARIDALCGDVYRRXXXXXXXXXXXXXXXXXXXXXXXXXLVIYQRNHDRRLLSLDDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKRKREFLSPPAP 758
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A7S2HI54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HI54_9STRA) HSP 1 Score: 175 bits (443), Expect = 1.380e-44 Identity = 100/263 (38.02%), Postives = 140/263 (53.23%), Query Frame = 1
Query: 871 PCACARFIGEVGPAPKERGYWFQKEN-VEDVRARVDALC------GDIYRR----------------------------WRHGYSPEPEGQ-----DQDLGRRSGM-RLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIM-SRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAK 1533
PC+CA+FIGE G AP ERGYWF+ + V R R+ LC GDI + W G+ G D R M +L+IYQRD+DRRL E + L + LG W + ++H L+PC L+ +L D+LLTPHGFQS+LL+F+ G+ + EVFP+KYWK GY P A E+G+ H + SR SW K +AL + +RCM SI CR ++R +V +++ L K+ + A+
Sbjct: 27 PCSCAKFIGEFGGAPIERGYWFESSHAVNATRERIRKLCSWFPSTGDIRQPQEDPQFATVTTSLSSDQSILSHDFLNQLWYRGHRGAVSGDKATRTSHDSPPRQPMHQLIIYQRDRDRRLELHEVLRKNLRKRLGKTWNVTVVMHKENLDPCGLWEELRVTDLLLTPHGFQSILLIFMRRGSALFEVFPFKYWKIGYRPFANEYGLWHGWSQNSRATSWVKNVALSLISQERCMHSIDCRLYARQDNVYIDDSSLLKVVKLAR 289
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A7S3XXH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXH4_HETAK) HSP 1 Score: 176 bits (445), Expect = 5.240e-43 Identity = 92/224 (41.07%), Postives = 126/224 (56.25%), Query Frame = 1
Query: 874 CACARFIGEVGPAPKERGYWFQKEN-VEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGM---RLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAAK 1533
CACARF+GE GPAP ERGYWF + V R R+ +C + G P P + + ++V+YQR+++R+ E +V L E LG +WEL ++H PC +Y AD+ T HGFQ++ +LF+PPG + EVFPYKYWK GYAPL RE G+ H + MS P R L VP C S CR ++R ADV + E LR++ ++K
Sbjct: 232 CACARFLGEFGPAPVERGYWFGGDREVRAARGRMAVMCD--HESGAAGGRPLPADEAAEAAXXXXPPKHKMVVYQRNRNRKFQRFEAMVEALEEQLGPEWELEVLLHSTDRHPCAMYESFHAADVFYTAHGFQTIAVLFMPPGGLVYEVFPYKYWKVGYAPLVREVGLTHHWAMSPPAGPVHRALLAAVPLSVCSLSYRCRLFARDADVVVGEAALRRVVVSSK 453
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A7S3GPP9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GPP9_9STRA) HSP 1 Score: 142 bits (359), Expect = 4.170e-34 Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1
Query: 880 CARFIGEVGPA--PKERGYWFQKENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSML-GELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKI 1518
CAR++G +G +RG+WF N D+ + D L R +P+ Q ++ ++V+YQRD R+L + E V+ML +L SDW++ ++H + PC L L + D+LLTPHGFQSMLLLFLP + E+FP KY+K GY P E+GV H MS + ++L L +V S CM S CR ++R DV L +H + +
Sbjct: 37 CARYMGSIGGTWPTVQRGHWFP--NPGDIESFRDTL--------RTACPADPQLLKQ-TAKKKKYKMVLYQRDLSRKLANQEEAVAMLRSKLSESDWDIEILMHKTSRSPCTLMHHLYNTDILLTPHGFQSMLLLFLPRPGLMFEIFPEKYYKRGYGPFGAEYGVTHGGTMSPSTGYYQQLVLPYVSSAYCMESKFCRGFARNQDVILTKHGVNNL 241
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE) HSP 1 Score: 146 bits (369), Expect = 4.610e-34 Identity = 82/220 (37.27%), Postives = 123/220 (55.91%), Query Frame = 1
Query: 862 TTRPCACARFIGEVGPAPKERGYWFQK-ENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKI 1518
+ R C +++ VG + +R WF E+ +R +DA C + R + G E EG RL++YQRD++R++L + +V L E LG W + ++HD+ PC L L D+LLTPHGFQSML LF+ PG+ + EVFP KY+K GYAP+A VRH Y MSR + + + ++ CM+ CR ++R +DV L+E L ++
Sbjct: 200 SAREPVCVKYLDTVGESVVQRSEWFPSPEDAASLRRAIDAYCPLSFLRSQEG---EEEGV---------RRLLLYQRDQNRQILHADKVVEDLQERLGGGWIVNMMMHDSDRHPCVLVETLAGVDVLLTPHGFQSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGLDVRHAYSMSRAL--RPMMGHSYPSTETCMKWYLCRWYARSSDVELDEESLERL 405
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A6H5JWT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT6_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.650e-31 Identity = 86/242 (35.54%), Postives = 122/242 (50.41%), Query Frame = 1
Query: 853 EAPTTRPCACARFIGEVGPAPKERGYWFQK-ENVEDVRARVDALC--------------GDIYRRWRHGYSPEPEGQDQDLGRRSGMR-LVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADVRLEEHHLRKIARAA 1530
E T R C +++ VG +WF E+ R ++ C GD +RR EG + G G+R L++YQRD+ RR+ + ++ L E LG DW + ++HD +PC L + D+LLTPHGFQSML LFL PGA + EVFP+KY+ YA + GVRH + MSR + R A ++ CMR CR +SR DV +EE L ++ + A
Sbjct: 288 ECDTPREPVCVKYLNTVGRKKVSTEHWFPSPEDARSFRTAINTFCPMPFLRGAEEAGAGGDRHRR--------VEGDGWEGGGEGGVRRLLLYQRDQCRRIKNAAQVMEDLRERLGGDWLVEEMIHDADRQPCELVKTVGGVDVLLTPHGFQSMLGLFLRPGALLFEVFPHKYFWGQYAAMVEGLGVRHAWSMSRSGRFFMRFA--HPTTETCMRYKRCRAYSRNTDVEIEEQDLERLVKLA 519
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: A0A482RTA3_9ARCH (DUF563 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTA3_9ARCH) HSP 1 Score: 119 bits (297), Expect = 2.360e-27 Identity = 59/141 (41.84%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 1069 RLVIYQRDKDRRLLSMEGIVSMLGELL-GSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPSDRCMRSISCRKWSRGADV 1488
+LVIYQRD R+LL + ++ ML L S WE+ ++H PC L+ +LLTPHGFQSMLLL +PP + + EVFP++Y+K Y+P E GV H +MS P W L + +V + C ++ CR +R DV
Sbjct: 13 KLVIYQRDLSRKLLKQDNVLQMLHSRLDNSKWEVEVVMHIPDRSPCTLHPLFAQTTLLLTPHGFQSMLLLLMPPSSLLFEVFPFRYYKPAYSPFGAEMGVHHGGVMSPPTYWLYGLLMQYVTTPWCTQTKMCRVNARDQDV 153
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.430e-26 Identity = 66/149 (44.30%), Postives = 96/149 (64.43%), Query Frame = 1
Query: 1069 RLVIYQRDKDRRLLSMEGIVSMLGELLGS-DWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLAREWGVRHEYIMSRPVSWEKRLALFFVPS-DRCMRSISCRKWSRGADVRLEEHHL 1509
+LVIYQRD+DR+LL E ++ L LG W + I+HD+ PC L +L AD+LLT HGFQSML LF+ PG+ + EV+P+KY+K GYAP+A+ G+R+ Y S P+ A + PS ++CM+ CR++ R +DV + E +
Sbjct: 302 KLVIYQRDRDRKLLKTEELMDELWIRLGHLGWAVKEIIHDDERHPCELVQELAGADILLTAHGFQSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPPLL---PFAFWSWPSVEQCMKWYVCRRYMRSSDVVITEDSI 447
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Match: D8LD62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD62_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.600e-26 Identity = 65/167 (38.92%), Postives = 98/167 (58.68%), Query Frame = 1
Query: 853 EAPTTRPCACARFIGEVGPAPKERGYWFQK-ENVEDVRARVDALCGDIYRRWRHGYSPEPEGQDQDLGRRSGMRLVIYQRDKDRRLLSMEGIVSMLGELLGSDWELVTIVHDNALEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKDGYAPLA 1350
E + R C +++ VG + +R WF E+ +R +DA C + R S E EG+++ + R+++YQRD++R++L + +V L E LG W + ++HD+ PC L L D+LLTPHGFQSML LF+ PG+ + EVFP KY+K GYAP+A
Sbjct: 212 EETSAREPVCVKYLDTVGESVVQRSEWFPSPEDAASLRRAIDAYCPLSFLR-----SEEGEGEEEGV-----RRVLLYQRDQNRQILHADKVVEDLQERLGGGWIVDMMMHDSDRHPCELVETLAGVDVLLTPHGFQSMLGLFMRPGSLLFEVFPQKYFKAGYAPMA 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13688.2598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13688.2598.1 >prot_H-elongata_contig13688.2598.1 ID=prot_H-elongata_contig13688.2598.1|Name=mRNA_H-elongata_contig13688.2598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=505bp MTFFLLLLAFTDGTSRTAEVLPRSAVAQQAITERVLALDTTAVESYVYDSback to top mRNA from alignment at H-elongata_contig13688:1341..5587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13688.2598.1 ID=mRNA_H-elongata_contig13688.2598.1|Name=mRNA_H-elongata_contig13688.2598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4247bp|location=Sequence derived from alignment at H-elongata_contig13688:1341..5587+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13688:1341..5587+ >mRNA_H-elongata_contig13688.2598.1 ID=mRNA_H-elongata_contig13688.2598.1|Name=mRNA_H-elongata_contig13688.2598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3030bp|location=Sequence derived from alignment at H-elongata_contig13688:1341..5587+ (Himanthalia elongata Himel1 dioecious)back to top |