mRNA_H-elongata_contig13670.2590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13670.2590.1
Unique NamemRNA_H-elongata_contig13670.2590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13670.2590.1 vs. uniprot
Match: A0A6H5KTR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTR9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.670e-15
Identity = 149/272 (54.78%), Postives = 168/272 (61.76%), Query Frame = 2
Query:  347 APKGQVLAGSGGLTDLLGIGAADSXXXXXXXXXXXXXARDGSI----SSSSKAGKIKSTAPPPNEKGLPEGFFDEDVEPPQVVVGAGGRSDKDEASTGR---QSDAAEGFGPKRAAELAXXXXXXXXXXXXXXXERLAALKAAGAVQAVAVAAISPAEVGDVGAAGEEEGEA---APKGSALPEGFFDDPEVDAKSRGVDLKAKKKQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLAVLMNKFESVGHKRRR 1132
            AP+GQV A   GLT LLGIGA DS XXXXXXXXXXXX          + ++              +GLP GFFDED+                         Q+     FG +RAAELA  XXXXXXXXX    E+LAA++AAG +   A  A   A                  AP GSALPEGFFDDPE+DAKSRGVDLKA+KK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLA+LMNK ES+  ++R+
Sbjct:  125 APRGQVQAEGVGLTGLLGIGAGDSSXXXXXXXXXXXXXXXXXXRHPGTDAAPVSXXXXXXXXXXPEGLPAGFFDEDLAXXXXXXXXXXXXXXXXXXXXXXRPQAPPVGRFGAERAAELAAEXXXXXXXXXLREAEKLAAMRAAGLLVVAADGATGGAAADXXXXXXXXXXXXXXXAPNGSALPEGFFDDPEMDAKSRGVDLKAEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLALLMNKSESIITRKRK 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13670.2590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTR9_9PHAE4.670e-1554.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13670contigH-elongata_contig13670:2830..6479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7FPG5
KEGG koko:K13104
EggNOG OGs2D068@1,2SCZH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004850.1
Exons6
Model size1631
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13670.2590.1prot_H-elongata_contig13670.2590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13670 2939..6256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.8328228-UTR-H-elongata_contig13670:2829..29381622929811.8328228-UTR-H-elongata_contig13670:2829..2938Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13670 2830..2938 -
1691679166.8842835-UTR-H-elongata_contig13670:2829..29381691679166.8842835-UTR-H-elongata_contig13670:2829..2938Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13670 2830..2938 -
1622929811.9831762-UTR-H-elongata_contig13670:6256..64791622929811.9831762-UTR-H-elongata_contig13670:6256..6479Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13670 6257..6479 -
1691679166.9455469-UTR-H-elongata_contig13670:6256..64791691679166.9455469-UTR-H-elongata_contig13670:6256..6479Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13670 6257..6479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.8658195-CDS-H-elongata_contig13670:2938..33951622929811.8658195-CDS-H-elongata_contig13670:2938..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 2939..3395 -
1691679166.8935525-CDS-H-elongata_contig13670:2938..33951691679166.8935525-CDS-H-elongata_contig13670:2938..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 2939..3395 -
1622929811.8893702-CDS-H-elongata_contig13670:3798..38631622929811.8893702-CDS-H-elongata_contig13670:3798..3863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 3799..3863 -
1691679166.901921-CDS-H-elongata_contig13670:3798..38631691679166.901921-CDS-H-elongata_contig13670:3798..3863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 3799..3863 -
1622929811.905976-CDS-H-elongata_contig13670:4193..42481622929811.905976-CDS-H-elongata_contig13670:4193..4248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 4194..4248 -
1691679166.9108775-CDS-H-elongata_contig13670:4193..42481691679166.9108775-CDS-H-elongata_contig13670:4193..4248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 4194..4248 -
1622929811.924278-CDS-H-elongata_contig13670:4689..52451622929811.924278-CDS-H-elongata_contig13670:4689..5245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 4690..5245 -
1691679166.9214926-CDS-H-elongata_contig13670:4689..52451691679166.9214926-CDS-H-elongata_contig13670:4689..5245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 4690..5245 -
1622929811.9433448-CDS-H-elongata_contig13670:5650..57171622929811.9433448-CDS-H-elongata_contig13670:5650..5717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 5651..5717 -
1691679166.9303987-CDS-H-elongata_contig13670:5650..57171691679166.9303987-CDS-H-elongata_contig13670:5650..5717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 5651..5717 -
1622929811.9645247-CDS-H-elongata_contig13670:6157..62561622929811.9645247-CDS-H-elongata_contig13670:6157..6256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 6158..6256 -
1691679166.9378943-CDS-H-elongata_contig13670:6157..62561691679166.9378943-CDS-H-elongata_contig13670:6157..6256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13670 6158..6256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13670.2590.1

>prot_H-elongata_contig13670.2590.1 ID=prot_H-elongata_contig13670.2590.1|Name=mRNA_H-elongata_contig13670.2590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=433bp
MLALLVAKKAGNGTGQKTARCVSPPKVQVQRVKAAPTTGSAAPKGQVLAG
SGGLTDLLGIGAADSSSDDDEEKNNGGKARDGSISSSSKAGKIKSTAPPP
NEKGLPEGFFDEDVEPPQVVVGAGGRSDKDEASTGRQSDAAEGFGPKRAA
ELAAEAAAEAEADAARDAERLAALKAAGAVQAVAVAAISPAEVGDVGAAG
EEEGEAAPKGSALPEGFFDDPEVDAKSRGVDLKAKKKQEEQSDWKEFMSF
AEEVKKVEKEEEQEEEAVEEDKEQYEELEQATMMGRLAVLMNKFESVGHK
RRRPSSSSGGNRETGDPVESGSPSSGSNLSNKADIGKGGDARQLEGMDKE
EMAWQSSSARKSSKRKDVEMSVEKTVTAMREVAVASAPMDAAAADIASML
KGRKRKQQEELEEAFAGEYVPMDPLNWRARGR*
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mRNA from alignment at H-elongata_contig13670:2830..6479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13670.2590.1 ID=mRNA_H-elongata_contig13670.2590.1|Name=mRNA_H-elongata_contig13670.2590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3650bp|location=Sequence derived from alignment at H-elongata_contig13670:2830..6479- (Himanthalia elongata Himel1 dioecious)
AGCTGGAGAGCACCCGTGTTAAACCAACGCAGCAATGCAATCCACTTGAA AATATACTAGGAAAAAACAGAGGGGAGGAGGGGGGGGGATATTATGAAAT AAAAAGTTATCGAGCGAACGACCCCCACCCCCACGCCGAGAGGTACTCCA AAGTCGACCCAGGATATACACGGACTCGCTCCCGCCCTCCTTGTGATGCT TGTGTCGAACTACCCAACACAAGATGTTAGCGCTGCTGGTGGCGAAGAAG GCGGGGAACGGCACGGGTCAAAAGACGGCACGCTGTGTGTCGCCACCCAA GGTCCAAGTCCAAAGAGTTAAGGTGTGTGTGTGTGTGTATTAAATTGTAC GTTTGTATTTGTGTATGTATTTATTAAATTGCACATAACCGCGCAATCCG GTCCTGTAATTCTAGTCATTCTTGACTATTAATACTCTAGCATTGGTCCT CCCAGTGTGTTGGTATGTCTCTGTGTCAGGGAGACATGTCTATTACTAAC GCTTTGATGTTTACGAGTATGGAGGGCTTTGCTGCCTGTATCGGCGGAAA GTGACCCGTGCCGAGGCGCAATCAAAACCTTACACTGATGTTTACACTAC TGCTGTACTCAATATCGTCAACCACTGGTAGTTAATGTCGACCACTTCCA CGGTACAGTTCGTTGTAGACAAAATGCTGCTAATGCTGCTGCTGTTGCCA TACCATAATCTGCCAACATTCTCACACTCGTGTGCGTGGTACGACCCCTG TCCGCTGACTAGGCCGCACCAACAACAGGCTCGGCCGCTCCGAAGGGGCA AGTCCTGGCTGGAAGCGGCGGACTTACAGGCGAGACAAACTTATAAAGCT TATTTATTTGTATACTATATATTAGAATATTAGAATATTAGAATATTAGG TATAGCGGGTACCGCACATGTGTTTGCTTGCTCAGCTACCGCGCCGTTCG ACACAGGCATGTTTGTTCTCTGGTGAGCGTATCGTCCCCCCCATGTCATT TGTTTAATATCTGGTACAGTTTTCGACGGGGTGCTAGCTGGTCGCGTAGT TGCACCGCACGAATACCCGCCCCTCCCTCCCGCCTGCCTGCCCGACCTCC GCGGGCCTTTTCTAGACCGACCGACTACTTGGGCCAACGCTATAGAGGAC AATAATCAGTAAATCATCTACCCTGTTCTGCAATATAACCTGGTCGTATG TTCTGCAATATAACCGAGTTCGTCGTCCCACCAGATCTCTTAGGTATTGG TGCTGCTGATAGCAGCAGCGACGATGACGAGGAGAAAAACAACGGTGGTA AGGCCAGAGATGGCAGCATCAGCAGCAGCAGCAAAGCGGGGAAAATAAAG TCCACCGCCCCACCACCAAACGAGAAGGGCTTGCCTGAAGGTTTCTTCGA CGAGGACGTCGAGCCACCTCAAGTCGTGGTCGGGGCGGGGGGACGTAGTG ATAAGGATGAGGCGAGCACAGGCAGACAAAGCGATGCGGCCGAGGGTTTT GGACCCAAGCGAGCGGCAGAGCTCGCCGCCGAGGCTGCCGCGGAGGCAGA GGCGGATGCAGCCCGCGACGCGGAGAGACTGGCTGCGTTGAAGGCAGCGG GCGCGGTTCAAGCCGTTGCTGTCGCTGCGATCTCTCCTGCAGAAGTGGGC GATGTGGGCGCGGCTGGAGAAGAGGAAGGGGAGGCGGCGCCAAAAGGATC TGCTCTCCCGGAGGGATTCTTTGATGATCCGGAAGTGGACGCCAAGTCCC GCGGGGTGGACCTCAAGGCCAAGAAAAAACAAGAGGAGCAGTAAGTCGGC GTCGGATCCTTCTGGATTCACGTCGATGTTTGTTTACCTTGCTTGTAGAG GTTGGTTGACCGATTGCGAGAGGACGCTTCAGCTTGCTGGCACCTGGCGA ACTTTCTCGCGCATTTACCGAATAATGCTCGTCTTCCGTTCCGCGCCTTC GAGTCCAGGCGCACAACGAGGTCTGCTTATGTCGTCCGTTTTTGTGTGCT TCCTCGCGTATAACACCGAGTTTCGGCGACTCTCATCTTGTAAACATGAA TTAATAACTTGCACCGAGATTCTTAAAGGTGTTTTCTTTTGCTGGTTGAT ATTTGGTCGACATGTCCACATCGAATCGGCGCACACACGCCTCTCTTTTG CCACGATACGGAGCATCCCTCGTGGACCGTCGACCCTCAAATTATGTATT TTCCCCGTGGTGTCCCTGCCTCGCCGGGCAGGAGCGATTGGAAGGAATTT ATGTCCTTCGCCGAAGAGGTCAAAAAGGTCGAGAAGGTGAGGCGCGCGCG CCCTAGCTCGAGGAGCTGGATTAAAAACTGTGCGTGTGTGTGTTATATCT TGAAAGGACATCGTGGAGGTAAGCGTCTTGAGTGGTTGATTGATCTTATC AAGGGGGGGGGGGGTTATAAACGGTCGTGGCCGTTGTGTTGCAAACTCCC TTCGCGTAAGGAGGGCAATATGACACGCCTCCTCTACTGCCGGTGCCGCC ACTATCGATACGGTTTAGCAATGCTGCCCGGTGTGTTTACTCCATTTTCC GGTGTCGAGCGCTTCGCGCCGAACTCAGCACCTAACCTAGAACATGTTTT GATTTTTCCCGTCCAGGAGGAGGAGCAAGAAGAGGAGGCCGTCGAGGAAG ACAAGGAACAGTACGAAGAGTTAGAACAAGCGTAAGTGGCGCTTCCCCCC GGACGCCGCCGTCCGTAACAAAACTTTTTGTACGGAACTGATTGTTCTGA AGATCTTTCAGCAACACCCCGTGCTTGCGGTGTAGTGTCTTGGCGTCGCT GTAGTACCGTTTAGGCCGTAGGCGCACGGATGATCGGTTCGGTCTCCTGC GCAAAGAGGCTGGGTCTCCCCTGTACTCAACAAGTTGGTCTGAAAAAGGT CGATGCGCTGTCGCAACATCTGTGCGCCCAGTTATGCCCTCTTTGTCGTG TAGCCGTTGCATCTTCTTCGAGCAGCAACTCTCTGCGTGGTAGTCGTATT TTGCTGCAGACAACGTCCCTTATTCCTTGTGCGGCTTTGACGAAAAACGA ACGCATGCTTGCTCCGCCCGACGCCGACGTGAAGTACCATGATGGGACGA CTAGCGGTGCTCATGAACAAGTTCGAGAGCGTCGGCCACAAGCGCAGGCG TCCGTCGTCGTCATCGGGGGGGAACAGAGAAACGGGAGATCCGGTGGAGA GTGGAAGCCCCAGCAGCGGCAGCAACCTCAGCAACAAAGCCGACATCGGC AAGGGAGGCGACGCGCGCCAACTCGAGGGAATGGATAAGGAAGAAATGGC GTGGCAGTCTTCTTCGGCAAGAAAAAGTAGCAAGAGGAAAGATGTTGAAA TGTCGGTCGAGAAAACGGTTACGGCAATGCGCGAGGTGGCGGTGGCATCG GCGCCAATGGATGCGGCGGCGGCAGATATCGCGAGCATGCTGAAGGGGCG AAAGCGCAAGCAACAGGAGGAATTGGAGGAGGCGTTTGCCGGGGAGTACG TGCCAATGGACCCGCTGAACTGGCGAGCGAGGGGGCGGTGATTATTTACG TGATTTGCTTGGTTCGTGACTCTTTTAGGACCATTAATTACTGCTGCGTG ATTAATTTCTGCTGAAGCATTTCGTCAGCGTAACTCGCCGAGATTGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig13670:2830..6479-

>mRNA_H-elongata_contig13670.2590.1 ID=mRNA_H-elongata_contig13670.2590.1|Name=mRNA_H-elongata_contig13670.2590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2598bp|location=Sequence derived from alignment at H-elongata_contig13670:2830..6479- (Himanthalia elongata Himel1 dioecious)
ATGTTAGCGCTGCTGGTGGCGAAGAAGGCGGGGAACGGCACGGGTCAAAA
GACGGCACGCTGTGTGTCGCCACCCAAGGTCCAAGTCCAAAGAGTTAAGA
TGTTAGCGCTGCTGGTGGCGAAGAAGGCGGGGAACGGCACGGGTCAAAAG
ACGGCACGCTGTGTGTCGCCACCCAAGGTCCAAGTCCAAAGAGTTAAGGC
CGCACCAACAACAGGCTCGGCCGCTCCGAAGGGGCAAGTCCTGGCTGGAA
GCGGCGGACTTACAGGCCGCACCAACAACAGGCTCGGCCGCTCCGAAGGG
GCAAGTCCTGGCTGGAAGCGGCGGACTTACAGATCTCTTAGGTATTGGTG
CTGCTGATAGCAGCAGCGACGATGACGAGGAGAAAAACAACGGTGGTAAG
GCCAGAGATGGCAGCATCAGCAGCAGCAGCAAAGCGGGGAAAATAAAGTC
CACCGCCCCACCACCAAACGAGAAGGGCTTGCCTGAAGGTTTCTTCGACG
AGGACGTCGAGCCACCTCAAGTCGTGGTCGGGGCGGGGGGACGTAGTGAT
AAGGATGAGGCGAGCACAGGCAGACAAAGCGATGCGGCCGAGGGTTTTGG
ACCCAAGCGAGCGGCAGAGCTCGCCGCCGAGGCTGCCGCGGAGGCAGAGG
CGGATGCAGCCCGCGACGCGGAGAGACTGGCTGCGTTGAAGGCAGCGGGC
GCGGTTCAAGCCGTTGCTGTCGCTGCGATCTCTCCTGCAGAAGTGGGCGA
TGTGGGCGCGGCTGGAGAAGAGGAAGGGGAGGCGGCGCCAAAAGGATCTG
CTCTCCCGGAGGGATTCTTTGATGATCCGGAAGTGGACGCCAAGTCCCGC
GGGGTGGACCTCAAGGCCAAGAAAAAACAAGAGGAGCAATCTCTTAGGTA
TTGGTGCTGCTGATAGCAGCAGCGACGATGACGAGGAGAAAAACAACGGT
GGTAAGGCCAGAGATGGCAGCATCAGCAGCAGCAGCAAAGCGGGGAAAAT
AAAGTCCACCGCCCCACCACCAAACGAGAAGGGCTTGCCTGAAGGTTTCT
TCGACGAGGACGTCGAGCCACCTCAAGTCGTGGTCGGGGCGGGGGGACGT
AGTGATAAGGATGAGGCGAGCACAGGCAGACAAAGCGATGCGGCCGAGGG
TTTTGGACCCAAGCGAGCGGCAGAGCTCGCCGCCGAGGCTGCCGCGGAGG
CAGAGGCGGATGCAGCCCGCGACGCGGAGAGACTGGCTGCGTTGAAGGCA
GCGGGCGCGGTTCAAGCCGTTGCTGTCGCTGCGATCTCTCCTGCAGAAGT
GGGCGATGTGGGCGCGGCTGGAGAAGAGGAAGGGGAGGCGGCGCCAAAAG
GATCTGCTCTCCCGGAGGGATTCTTTGATGATCCGGAAGTGGACGCCAAG
TCCCGCGGGGTGGACCTCAAGGCCAAGAAAAAACAAGAGGAGCAGAGCGA
TTGGAAGGAATTTATGTCCTTCGCCGAAGAGGTCAAAAAGGTCGAGAAGG
AGCGATTGGAAGGAATTTATGTCCTTCGCCGAAGAGGTCAAAAAGGTCGA
GAAGGAGGAGGAGCAAGAAGAGGAGGCCGTCGAGGAAGACAAGGAACAGT
ACGAAGAGTTAGAACAAGCGAGGAGGAGCAAGAAGAGGAGGCCGTCGAGG
AAGACAAGGAACAGTACGAAGAGTTAGAACAAGCTACCATGATGGGACGA
CTAGCGGTGCTCATGAACAAGTTCGAGAGCGTCGGCCACAAGCGCAGGCG
TCCGTCGTCGTCATCGGGGGGGAACAGAGAAACGGGAGATCCGGTGGAGA
GTGGAAGCCCCAGCAGCGGCAGCAACCTCAGCAACAAAGCCGACATCGGC
AAGGGAGGCGACGCGCGCCAACTCGAGGGAATGGATAAGGAAGAAATGGC
GTGGCAGTCTTCTTCGGCAAGAAAAAGTAGCAAGAGGAAAGATGTTGAAA
TGTCGGTCGAGAAAACGGTTACGGCAATGCGCGAGGTGGCGGTGGCATCG
GCGCCAATGGATGCGGCGGCGGCAGATATCGCGAGCATGCTGAAGGGGCG
AAAGCGCAAGCAACAGGAGGAATTGGAGGAGGCGTTTGCCGGGGAGTACG
TGCCAATGGACCCGCTGAACTGGCGAGCGAGGGGGCGGTGATACCATGAT
GGGACGACTAGCGGTGCTCATGAACAAGTTCGAGAGCGTCGGCCACAAGC
GCAGGCGTCCGTCGTCGTCATCGGGGGGGAACAGAGAAACGGGAGATCCG
GTGGAGAGTGGAAGCCCCAGCAGCGGCAGCAACCTCAGCAACAAAGCCGA
CATCGGCAAGGGAGGCGACGCGCGCCAACTCGAGGGAATGGATAAGGAAG
AAATGGCGTGGCAGTCTTCTTCGGCAAGAAAAAGTAGCAAGAGGAAAGAT
GTTGAAATGTCGGTCGAGAAAACGGTTACGGCAATGCGCGAGGTGGCGGT
GGCATCGGCGCCAATGGATGCGGCGGCGGCAGATATCGCGAGCATGCTGA
AGGGGCGAAAGCGCAAGCAACAGGAGGAATTGGAGGAGGCGTTTGCCGGG
GAGTACGTGCCAATGGACCCGCTGAACTGGCGAGCGAGGGGGCGGTGA
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