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Homology
BLAST of mRNA_H-elongata_contig13670.2590.1 vs. uniprot
Match: A0A6H5KTR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTR9_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 4.670e-15 Identity = 149/272 (54.78%), Postives = 168/272 (61.76%), Query Frame = 2
Query: 347 APKGQVLAGSGGLTDLLGIGAADSXXXXXXXXXXXXXARDGSI----SSSSKAGKIKSTAPPPNEKGLPEGFFDEDVEPPQVVVGAGGRSDKDEASTGR---QSDAAEGFGPKRAAELAXXXXXXXXXXXXXXXERLAALKAAGAVQAVAVAAISPAEVGDVGAAGEEEGEA---APKGSALPEGFFDDPEVDAKSRGVDLKAKKKQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLAVLMNKFESVGHKRRR 1132
AP+GQV A GLT LLGIGA DS XXXXXXXXXXXX + ++ +GLP GFFDED+ Q+ FG +RAAELA XXXXXXXXX E+LAA++AAG + A A A AP GSALPEGFFDDPE+DAKSRGVDLKA+KK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLA+LMNK ES+ ++R+
Sbjct: 125 APRGQVQAEGVGLTGLLGIGAGDSSXXXXXXXXXXXXXXXXXXRHPGTDAAPVSXXXXXXXXXXPEGLPAGFFDEDLAXXXXXXXXXXXXXXXXXXXXXXRPQAPPVGRFGAERAAELAAEXXXXXXXXXLREAEKLAAMRAAGLLVVAADGATGGAAADXXXXXXXXXXXXXXXAPNGSALPEGFFDDPEMDAKSRGVDLKAEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLALLMNKSESIITRKRK 396
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 104.0 |
| Seed ortholog evalue | 1.8e-19 |
| Seed eggNOG ortholog | 2880.D7FPG5 |
| KEGG ko | ko:K13104 |
| EggNOG OGs | 2D068@1,2SCZH@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03041 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-14_004850.1 |
| Exons | 6 |
| Model size | 1631 |
| Cds size | 1299 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929811.8328228-UTR-H-elongata_contig13670:2829..2938 | 1622929811.8328228-UTR-H-elongata_contig13670:2829..2938 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13670 2830..2938 - |
| 1691679166.8842835-UTR-H-elongata_contig13670:2829..2938 | 1691679166.8842835-UTR-H-elongata_contig13670:2829..2938 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13670 2830..2938 - |
| 1622929811.9831762-UTR-H-elongata_contig13670:6256..6479 | 1622929811.9831762-UTR-H-elongata_contig13670:6256..6479 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13670 6257..6479 - |
| 1691679166.9455469-UTR-H-elongata_contig13670:6256..6479 | 1691679166.9455469-UTR-H-elongata_contig13670:6256..6479 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13670 6257..6479 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929811.8658195-CDS-H-elongata_contig13670:2938..3395 | 1622929811.8658195-CDS-H-elongata_contig13670:2938..3395 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 2939..3395 - |
| 1691679166.8935525-CDS-H-elongata_contig13670:2938..3395 | 1691679166.8935525-CDS-H-elongata_contig13670:2938..3395 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 2939..3395 - |
| 1622929811.8893702-CDS-H-elongata_contig13670:3798..3863 | 1622929811.8893702-CDS-H-elongata_contig13670:3798..3863 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 3799..3863 - |
| 1691679166.901921-CDS-H-elongata_contig13670:3798..3863 | 1691679166.901921-CDS-H-elongata_contig13670:3798..3863 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 3799..3863 - |
| 1622929811.905976-CDS-H-elongata_contig13670:4193..4248 | 1622929811.905976-CDS-H-elongata_contig13670:4193..4248 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 4194..4248 - |
| 1691679166.9108775-CDS-H-elongata_contig13670:4193..4248 | 1691679166.9108775-CDS-H-elongata_contig13670:4193..4248 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 4194..4248 - |
| 1622929811.924278-CDS-H-elongata_contig13670:4689..5245 | 1622929811.924278-CDS-H-elongata_contig13670:4689..5245 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 4690..5245 - |
| 1691679166.9214926-CDS-H-elongata_contig13670:4689..5245 | 1691679166.9214926-CDS-H-elongata_contig13670:4689..5245 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 4690..5245 - |
| 1622929811.9433448-CDS-H-elongata_contig13670:5650..5717 | 1622929811.9433448-CDS-H-elongata_contig13670:5650..5717 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 5651..5717 - |
| 1691679166.9303987-CDS-H-elongata_contig13670:5650..5717 | 1691679166.9303987-CDS-H-elongata_contig13670:5650..5717 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 5651..5717 - |
| 1622929811.9645247-CDS-H-elongata_contig13670:6157..6256 | 1622929811.9645247-CDS-H-elongata_contig13670:6157..6256 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 6158..6256 - |
| 1691679166.9378943-CDS-H-elongata_contig13670:6157..6256 | 1691679166.9378943-CDS-H-elongata_contig13670:6157..6256 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13670 6158..6256 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13670.2590.1 >prot_H-elongata_contig13670.2590.1 ID=prot_H-elongata_contig13670.2590.1|Name=mRNA_H-elongata_contig13670.2590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=433bp
MLALLVAKKAGNGTGQKTARCVSPPKVQVQRVKAAPTTGSAAPKGQVLAG SGGLTDLLGIGAADSSSDDDEEKNNGGKARDGSISSSSKAGKIKSTAPPP NEKGLPEGFFDEDVEPPQVVVGAGGRSDKDEASTGRQSDAAEGFGPKRAA ELAAEAAAEAEADAARDAERLAALKAAGAVQAVAVAAISPAEVGDVGAAG EEEGEAAPKGSALPEGFFDDPEVDAKSRGVDLKAKKKQEEQSDWKEFMSF AEEVKKVEKEEEQEEEAVEEDKEQYEELEQATMMGRLAVLMNKFESVGHK RRRPSSSSGGNRETGDPVESGSPSSGSNLSNKADIGKGGDARQLEGMDKE EMAWQSSSARKSSKRKDVEMSVEKTVTAMREVAVASAPMDAAAADIASML KGRKRKQQEELEEAFAGEYVPMDPLNWRARGR* back to topmRNA from alignment at H-elongata_contig13670:2830..6479- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig13670.2590.1 ID=mRNA_H-elongata_contig13670.2590.1|Name=mRNA_H-elongata_contig13670.2590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3650bp|location=Sequence derived from alignment at H-elongata_contig13670:2830..6479- (Himanthalia elongata Himel1 dioecious) AGCTGGAGAGCACCCGTGTTAAACCAACGCAGCAATGCAATCCACTTGAA
AATATACTAGGAAAAAACAGAGGGGAGGAGGGGGGGGGATATTATGAAAT
AAAAAGTTATCGAGCGAACGACCCCCACCCCCACGCCGAGAGGTACTCCA
AAGTCGACCCAGGATATACACGGACTCGCTCCCGCCCTCCTTGTGATGCT
TGTGTCGAACTACCCAACACAAGATGTTAGCGCTGCTGGTGGCGAAGAAG
GCGGGGAACGGCACGGGTCAAAAGACGGCACGCTGTGTGTCGCCACCCAA
GGTCCAAGTCCAAAGAGTTAAGGTGTGTGTGTGTGTGTATTAAATTGTAC
GTTTGTATTTGTGTATGTATTTATTAAATTGCACATAACCGCGCAATCCG
GTCCTGTAATTCTAGTCATTCTTGACTATTAATACTCTAGCATTGGTCCT
CCCAGTGTGTTGGTATGTCTCTGTGTCAGGGAGACATGTCTATTACTAAC
GCTTTGATGTTTACGAGTATGGAGGGCTTTGCTGCCTGTATCGGCGGAAA
GTGACCCGTGCCGAGGCGCAATCAAAACCTTACACTGATGTTTACACTAC
TGCTGTACTCAATATCGTCAACCACTGGTAGTTAATGTCGACCACTTCCA
CGGTACAGTTCGTTGTAGACAAAATGCTGCTAATGCTGCTGCTGTTGCCA
TACCATAATCTGCCAACATTCTCACACTCGTGTGCGTGGTACGACCCCTG
TCCGCTGACTAGGCCGCACCAACAACAGGCTCGGCCGCTCCGAAGGGGCA
AGTCCTGGCTGGAAGCGGCGGACTTACAGGCGAGACAAACTTATAAAGCT
TATTTATTTGTATACTATATATTAGAATATTAGAATATTAGAATATTAGG
TATAGCGGGTACCGCACATGTGTTTGCTTGCTCAGCTACCGCGCCGTTCG
ACACAGGCATGTTTGTTCTCTGGTGAGCGTATCGTCCCCCCCATGTCATT
TGTTTAATATCTGGTACAGTTTTCGACGGGGTGCTAGCTGGTCGCGTAGT
TGCACCGCACGAATACCCGCCCCTCCCTCCCGCCTGCCTGCCCGACCTCC
GCGGGCCTTTTCTAGACCGACCGACTACTTGGGCCAACGCTATAGAGGAC
AATAATCAGTAAATCATCTACCCTGTTCTGCAATATAACCTGGTCGTATG
TTCTGCAATATAACCGAGTTCGTCGTCCCACCAGATCTCTTAGGTATTGG
TGCTGCTGATAGCAGCAGCGACGATGACGAGGAGAAAAACAACGGTGGTA
AGGCCAGAGATGGCAGCATCAGCAGCAGCAGCAAAGCGGGGAAAATAAAG
TCCACCGCCCCACCACCAAACGAGAAGGGCTTGCCTGAAGGTTTCTTCGA
CGAGGACGTCGAGCCACCTCAAGTCGTGGTCGGGGCGGGGGGACGTAGTG
ATAAGGATGAGGCGAGCACAGGCAGACAAAGCGATGCGGCCGAGGGTTTT
GGACCCAAGCGAGCGGCAGAGCTCGCCGCCGAGGCTGCCGCGGAGGCAGA
GGCGGATGCAGCCCGCGACGCGGAGAGACTGGCTGCGTTGAAGGCAGCGG
GCGCGGTTCAAGCCGTTGCTGTCGCTGCGATCTCTCCTGCAGAAGTGGGC
GATGTGGGCGCGGCTGGAGAAGAGGAAGGGGAGGCGGCGCCAAAAGGATC
TGCTCTCCCGGAGGGATTCTTTGATGATCCGGAAGTGGACGCCAAGTCCC
GCGGGGTGGACCTCAAGGCCAAGAAAAAACAAGAGGAGCAGTAAGTCGGC
GTCGGATCCTTCTGGATTCACGTCGATGTTTGTTTACCTTGCTTGTAGAG
GTTGGTTGACCGATTGCGAGAGGACGCTTCAGCTTGCTGGCACCTGGCGA
ACTTTCTCGCGCATTTACCGAATAATGCTCGTCTTCCGTTCCGCGCCTTC
GAGTCCAGGCGCACAACGAGGTCTGCTTATGTCGTCCGTTTTTGTGTGCT
TCCTCGCGTATAACACCGAGTTTCGGCGACTCTCATCTTGTAAACATGAA
TTAATAACTTGCACCGAGATTCTTAAAGGTGTTTTCTTTTGCTGGTTGAT
ATTTGGTCGACATGTCCACATCGAATCGGCGCACACACGCCTCTCTTTTG
CCACGATACGGAGCATCCCTCGTGGACCGTCGACCCTCAAATTATGTATT
TTCCCCGTGGTGTCCCTGCCTCGCCGGGCAGGAGCGATTGGAAGGAATTT
ATGTCCTTCGCCGAAGAGGTCAAAAAGGTCGAGAAGGTGAGGCGCGCGCG
CCCTAGCTCGAGGAGCTGGATTAAAAACTGTGCGTGTGTGTGTTATATCT
TGAAAGGACATCGTGGAGGTAAGCGTCTTGAGTGGTTGATTGATCTTATC
AAGGGGGGGGGGGGTTATAAACGGTCGTGGCCGTTGTGTTGCAAACTCCC
TTCGCGTAAGGAGGGCAATATGACACGCCTCCTCTACTGCCGGTGCCGCC
ACTATCGATACGGTTTAGCAATGCTGCCCGGTGTGTTTACTCCATTTTCC
GGTGTCGAGCGCTTCGCGCCGAACTCAGCACCTAACCTAGAACATGTTTT
GATTTTTCCCGTCCAGGAGGAGGAGCAAGAAGAGGAGGCCGTCGAGGAAG
ACAAGGAACAGTACGAAGAGTTAGAACAAGCGTAAGTGGCGCTTCCCCCC
GGACGCCGCCGTCCGTAACAAAACTTTTTGTACGGAACTGATTGTTCTGA
AGATCTTTCAGCAACACCCCGTGCTTGCGGTGTAGTGTCTTGGCGTCGCT
GTAGTACCGTTTAGGCCGTAGGCGCACGGATGATCGGTTCGGTCTCCTGC
GCAAAGAGGCTGGGTCTCCCCTGTACTCAACAAGTTGGTCTGAAAAAGGT
CGATGCGCTGTCGCAACATCTGTGCGCCCAGTTATGCCCTCTTTGTCGTG
TAGCCGTTGCATCTTCTTCGAGCAGCAACTCTCTGCGTGGTAGTCGTATT
TTGCTGCAGACAACGTCCCTTATTCCTTGTGCGGCTTTGACGAAAAACGA
ACGCATGCTTGCTCCGCCCGACGCCGACGTGAAGTACCATGATGGGACGA
CTAGCGGTGCTCATGAACAAGTTCGAGAGCGTCGGCCACAAGCGCAGGCG
TCCGTCGTCGTCATCGGGGGGGAACAGAGAAACGGGAGATCCGGTGGAGA
GTGGAAGCCCCAGCAGCGGCAGCAACCTCAGCAACAAAGCCGACATCGGC
AAGGGAGGCGACGCGCGCCAACTCGAGGGAATGGATAAGGAAGAAATGGC
GTGGCAGTCTTCTTCGGCAAGAAAAAGTAGCAAGAGGAAAGATGTTGAAA
TGTCGGTCGAGAAAACGGTTACGGCAATGCGCGAGGTGGCGGTGGCATCG
GCGCCAATGGATGCGGCGGCGGCAGATATCGCGAGCATGCTGAAGGGGCG
AAAGCGCAAGCAACAGGAGGAATTGGAGGAGGCGTTTGCCGGGGAGTACG
TGCCAATGGACCCGCTGAACTGGCGAGCGAGGGGGCGGTGATTATTTACG
TGATTTGCTTGGTTCGTGACTCTTTTAGGACCATTAATTACTGCTGCGTG
ATTAATTTCTGCTGAAGCATTTCGTCAGCGTAACTCGCCGAGATTGGCGA
back to topCoding sequence (CDS) from alignment at H-elongata_contig13670:2830..6479- >mRNA_H-elongata_contig13670.2590.1 ID=mRNA_H-elongata_contig13670.2590.1|Name=mRNA_H-elongata_contig13670.2590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2598bp|location=Sequence derived from alignment at H-elongata_contig13670:2830..6479- (Himanthalia elongata Himel1 dioecious) ATGTTAGCGCTGCTGGTGGCGAAGAAGGCGGGGAACGGCACGGGTCAAAA GACGGCACGCTGTGTGTCGCCACCCAAGGTCCAAGTCCAAAGAGTTAAGA TGTTAGCGCTGCTGGTGGCGAAGAAGGCGGGGAACGGCACGGGTCAAAAG ACGGCACGCTGTGTGTCGCCACCCAAGGTCCAAGTCCAAAGAGTTAAGGC CGCACCAACAACAGGCTCGGCCGCTCCGAAGGGGCAAGTCCTGGCTGGAA GCGGCGGACTTACAGGCCGCACCAACAACAGGCTCGGCCGCTCCGAAGGG GCAAGTCCTGGCTGGAAGCGGCGGACTTACAGATCTCTTAGGTATTGGTG CTGCTGATAGCAGCAGCGACGATGACGAGGAGAAAAACAACGGTGGTAAG GCCAGAGATGGCAGCATCAGCAGCAGCAGCAAAGCGGGGAAAATAAAGTC CACCGCCCCACCACCAAACGAGAAGGGCTTGCCTGAAGGTTTCTTCGACG AGGACGTCGAGCCACCTCAAGTCGTGGTCGGGGCGGGGGGACGTAGTGAT AAGGATGAGGCGAGCACAGGCAGACAAAGCGATGCGGCCGAGGGTTTTGG ACCCAAGCGAGCGGCAGAGCTCGCCGCCGAGGCTGCCGCGGAGGCAGAGG CGGATGCAGCCCGCGACGCGGAGAGACTGGCTGCGTTGAAGGCAGCGGGC GCGGTTCAAGCCGTTGCTGTCGCTGCGATCTCTCCTGCAGAAGTGGGCGA TGTGGGCGCGGCTGGAGAAGAGGAAGGGGAGGCGGCGCCAAAAGGATCTG CTCTCCCGGAGGGATTCTTTGATGATCCGGAAGTGGACGCCAAGTCCCGC GGGGTGGACCTCAAGGCCAAGAAAAAACAAGAGGAGCAATCTCTTAGGTA TTGGTGCTGCTGATAGCAGCAGCGACGATGACGAGGAGAAAAACAACGGT GGTAAGGCCAGAGATGGCAGCATCAGCAGCAGCAGCAAAGCGGGGAAAAT AAAGTCCACCGCCCCACCACCAAACGAGAAGGGCTTGCCTGAAGGTTTCT TCGACGAGGACGTCGAGCCACCTCAAGTCGTGGTCGGGGCGGGGGGACGT AGTGATAAGGATGAGGCGAGCACAGGCAGACAAAGCGATGCGGCCGAGGG TTTTGGACCCAAGCGAGCGGCAGAGCTCGCCGCCGAGGCTGCCGCGGAGG CAGAGGCGGATGCAGCCCGCGACGCGGAGAGACTGGCTGCGTTGAAGGCA GCGGGCGCGGTTCAAGCCGTTGCTGTCGCTGCGATCTCTCCTGCAGAAGT GGGCGATGTGGGCGCGGCTGGAGAAGAGGAAGGGGAGGCGGCGCCAAAAG GATCTGCTCTCCCGGAGGGATTCTTTGATGATCCGGAAGTGGACGCCAAG TCCCGCGGGGTGGACCTCAAGGCCAAGAAAAAACAAGAGGAGCAGAGCGA TTGGAAGGAATTTATGTCCTTCGCCGAAGAGGTCAAAAAGGTCGAGAAGG AGCGATTGGAAGGAATTTATGTCCTTCGCCGAAGAGGTCAAAAAGGTCGA GAAGGAGGAGGAGCAAGAAGAGGAGGCCGTCGAGGAAGACAAGGAACAGT ACGAAGAGTTAGAACAAGCGAGGAGGAGCAAGAAGAGGAGGCCGTCGAGG AAGACAAGGAACAGTACGAAGAGTTAGAACAAGCTACCATGATGGGACGA CTAGCGGTGCTCATGAACAAGTTCGAGAGCGTCGGCCACAAGCGCAGGCG TCCGTCGTCGTCATCGGGGGGGAACAGAGAAACGGGAGATCCGGTGGAGA GTGGAAGCCCCAGCAGCGGCAGCAACCTCAGCAACAAAGCCGACATCGGC AAGGGAGGCGACGCGCGCCAACTCGAGGGAATGGATAAGGAAGAAATGGC GTGGCAGTCTTCTTCGGCAAGAAAAAGTAGCAAGAGGAAAGATGTTGAAA TGTCGGTCGAGAAAACGGTTACGGCAATGCGCGAGGTGGCGGTGGCATCG GCGCCAATGGATGCGGCGGCGGCAGATATCGCGAGCATGCTGAAGGGGCG AAAGCGCAAGCAACAGGAGGAATTGGAGGAGGCGTTTGCCGGGGAGTACG TGCCAATGGACCCGCTGAACTGGCGAGCGAGGGGGCGGTGATACCATGAT GGGACGACTAGCGGTGCTCATGAACAAGTTCGAGAGCGTCGGCCACAAGC GCAGGCGTCCGTCGTCGTCATCGGGGGGGAACAGAGAAACGGGAGATCCG GTGGAGAGTGGAAGCCCCAGCAGCGGCAGCAACCTCAGCAACAAAGCCGA CATCGGCAAGGGAGGCGACGCGCGCCAACTCGAGGGAATGGATAAGGAAG AAATGGCGTGGCAGTCTTCTTCGGCAAGAAAAAGTAGCAAGAGGAAAGAT GTTGAAATGTCGGTCGAGAAAACGGTTACGGCAATGCGCGAGGTGGCGGT GGCATCGGCGCCAATGGATGCGGCGGCGGCAGATATCGCGAGCATGCTGA AGGGGCGAAAGCGCAAGCAACAGGAGGAATTGGAGGAGGCGTTTGCCGGG GAGTACGTGCCAATGGACCCGCTGAACTGGCGAGCGAGGGGGCGGTGA back to top
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