mRNA_H-elongata_contig13666.2585.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13666.2585.1
Unique NamemRNA_H-elongata_contig13666.2585.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A6H5KGX8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.040e-24
Identity = 66/166 (39.76%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 PKCARCSGFGHVESTCSSDATVL--VME--PDDDSAEDRAF--VACETGKCSMTFDYEGGNGELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSK--ISTAGYGDLVVAFRNNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQGSVVEKNKVTL 474
            P+C + +G+GH E  C+ +  VL  VM    DDDSA D+AF  VA   GKC +      G  EL + V+QY+AD+ ATC M   A+   NYR+C+  +    G K  +   GYGD+VV  ++   WV + + N  +VP   YN LSLT+LA++G     +K  +TL
Sbjct:  371 PRCGKRAGWGHNEDKCTREEAVLAQVMSYVSDDDSATDQAFCVVAQPPGKCGIVDLGLVGVEELGQDVMQYVADTAATCSMFRCANAFVNYRECNGWVRGIGGDKAPVPLLGYGDVVVVLKSEGGWVPLPIPNAVHVPEAPYNLLSLTTLAEEGHKYSGQKGGLTL 536          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A6S7H2J3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H2J3_PARCT)

HSP 1 Score: 61.6 bits (148), Expect = 4.160e-8
Identity = 44/166 (26.51%), Postives = 72/166 (43.37%), Query Frame = 1
Query:    1 PKCARCSGFGHVESTCSSDATVLVMEPDDDSAE--------DRAFVACETGKCSMTFDYEGGN-------GELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQP--LSLANGSKISTAGYGDLVVAFR--NNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQ 441
            PKC  C  FGH++  C     +  ++ D D +E         +A  A ++ +   + D + G          ++ +   +I DSGATCHM  D           +P  ++L +G  +   G G +       N  K     LQ+V YVP LSYN +S++   + G+
Sbjct:  218 PKCYHCGKFGHIKRNCRE---LNSLKHDGDKSEFNEGIDNKHKANTAAKSRRTDSSSDSDEGGLMVNHAFSSVNGRTNTWIIDSGATCHMCNDVSQFVKLHNLEKPEDVTLGDGHVVKATGRGVVKTKIESPNGRKGKSCVLQDVLYVPSLSYNLVSVSKATKSGK 380          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A6H5K905_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K905_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.590e-8
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   22 GFGHVESTCSSDATVLVM----EPDDDSAEDRAF--VACETGKCSMTFDYEGGNGELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSK--ISTAGYGDLVVAFRN 342
            G+G+ +  C++   VL      + D DS E++AF  VA   G+C        G  E  + V+QY+AD+ ATC M   A+   NYR+C   +    G K  I   GYGD++V  R+
Sbjct:  150 GWGYTKDKCATQEVVLAQVVYCDSDMDSVENQAFCPVAGFQGECGTANVDLVGATEHGQDVMQYVADTAATCSMFRCANAFVNYRECGGWVKGTGGDKAPIPLLGYGDVIVVLRS 264          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A026WX30_OOCBI (Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WX30_OOCBI)

HSP 1 Score: 60.8 bits (146), Expect = 7.370e-8
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQGSVVEKN 462
            +  DSGA+ HMTP  + LT++++  +P+++  G+ I   G GD+ +   +  KW    L+ V YVP L  N  S++S+A K    +++K+
Sbjct:  145 WYLDSGASEHMTPRKEWLTDFKRIKKPVTIG-GTTIDATGIGDIKLETFDGKKWKPCVLKKVLYVPNLKLNLFSVSSIADKDCKIIIDKD 233          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UPN0_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPN0_SALR5)

HSP 1 Score: 58.9 bits (141), Expect = 2.010e-7
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
            ++ADSGAT H+T DA  LTNY   +Q +++AN   ++  G GD V+     +     + L+NV +VP + YN L+L  + +  +G+ V
Sbjct:   94 WLADSGATAHITSDASLLTNYIAVTQHVTVANNQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 181          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UP05_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UP05_SALR5)

HSP 1 Score: 59.3 bits (142), Expect = 2.700e-7
Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  166 GELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
            G + +Q+  ++ADSGAT H+T DA  LTNY   +Q +++AN   ++  G GD V+     +     + L+NV +VP + YN L+L  + +  +G+ +
Sbjct:   14 GPVSQQL--WLADSGATAHITSDASLLTNYIAVTQHVTVANNQAVTVIGKGDAVLRVTGTDGVPGTITLKNVLHVPDIKYNLLALNLVTRARRGASI 108          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UNK2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNK2_SALR5)

HSP 1 Score: 58.9 bits (141), Expect = 3.590e-7
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
            ++ADSGAT H+T DA  LTNY   +Q +++AN   ++  G GD V+     +     + L+NV +VP + YN L+L  + +  +G+ V
Sbjct:   83 WLADSGATAHITSDASLLTNYIAVTQHVTVANNQTVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNILALNLVTRARRGASV 170          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2TWR2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWR2_SALR5)

HSP 1 Score: 58.5 bits (140), Expect = 3.670e-7
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
            ++ADSGAT H+T DA  LTNY   +Q +++AN   ++  G GD V+     +     + L+NV +VP + YN L+L  + +  +G+ V
Sbjct:   96 WLADSGATAHITNDASLLTNYIAVTQHVTVANSQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 183          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UPN1_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPN1_SALR5)

HSP 1 Score: 58.9 bits (141), Expect = 3.680e-7
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
            ++ADSGAT H+T DA  LTNY   +Q +++AN   ++  G GD V+     +     + L+NV +VP + YN L+L  + +  +G+ V
Sbjct:  428 WLADSGATAHITSDASLLTNYIAVTQHVTVANNQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 515          
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UN34_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UN34_SALR5)

HSP 1 Score: 58.9 bits (141), Expect = 3.760e-7
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
            ++ADSGAT H+T DA  LTNY   +Q +++AN   ++  G GD V+     +     + L+NV +VP + YN L+L  + +  +G+ V
Sbjct:   52 WLADSGATAHITSDASLLTNYIAVTQHVTVANSQAVTAIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGX8_9PHAE3.040e-2439.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6S7H2J3_PARCT4.160e-826.51Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6H5K905_9PHAE5.590e-834.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A026WX30_OOCBI7.370e-833.33Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173... [more]
F2UPN0_SALR52.010e-736.36Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
F2UP05_SALR52.700e-734.02Integrase catalytic domain-containing protein n=1 ... [more]
F2UNK2_SALR53.590e-736.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2TWR2_SALR53.670e-736.36Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
F2UPN1_SALR53.680e-736.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2UN34_SALR53.760e-736.36Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13666contigH-elongata_contig13666:6976..7452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.3394506-CDS-H-elongata_contig13666:6975..74521622929811.3394506-CDS-H-elongata_contig13666:6975..7452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13666 6976..7452 -
1691679166.7605343-CDS-H-elongata_contig13666:6975..74521691679166.7605343-CDS-H-elongata_contig13666:6975..7452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13666 6976..7452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13666.2585.1prot_H-elongata_contig13666.2585.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13666 6976..7452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13666.2585.1

>prot_H-elongata_contig13666.2585.1 ID=prot_H-elongata_contig13666.2585.1|Name=mRNA_H-elongata_contig13666.2585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
PKCARCSGFGHVESTCSSDATVLVMEPDDDSAEDRAFVACETGKCSMTFD
YEGGNGELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKI
STAGYGDLVVAFRNNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQGSV
VEKNKVTLQ
back to top

mRNA from alignment at H-elongata_contig13666:6976..7452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13666.2585.1 ID=mRNA_H-elongata_contig13666.2585.1|Name=mRNA_H-elongata_contig13666.2585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig13666:6976..7452- (Himanthalia elongata Himel1 dioecious)
CCCAAATGTGCTAGGTGTTCAGGTTTTGGCCACGTGGAGAGCACGTGTTC ATCAGACGCGACGGTACTGGTGATGGAGCCAGACGATGATTCGGCGGAAG ATCGGGCATTCGTGGCGTGTGAAACAGGCAAGTGCAGTATGACATTCGAT TATGAAGGCGGGAATGGGGAGCTGGACAAGCAGGTCGTGCAGTATATCGC TGACAGTGGTGCAACATGCCATATGACGCCAGACGCCGACGGTCTTACAA ACTATCGAAAGTGCAGCCAGCCACTAAGCCTGGCTAACGGTAGCAAAATC TCTACCGCAGGTTACGGTGACCTCGTCGTAGCCTTCCGCAATAACAACAA ATGGGTACGCGTAGAACTGCAGAACGTAGCGTACGTACCCATGTTGAGCT ACAACACCCTCTCCCTCACATCGCTGGCACAAAAAGGACAAGGGTCCGTT GTTGAGAAGAATAAAGTGACTCTCCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13666:6976..7452-

>mRNA_H-elongata_contig13666.2585.1 ID=mRNA_H-elongata_contig13666.2585.1|Name=mRNA_H-elongata_contig13666.2585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig13666:6976..7452- (Himanthalia elongata Himel1 dioecious)
CCCAAATGTGCTAGGTGTTCAGGTTTTGGCCACGTGGAGAGCACGTGTTC
ATCAGACGCGACGGTACTGGTGATGGAGCCAGACGATGATTCGGCGGAAG
ATCGGGCATTCGTGGCGTGTGAAACAGGCAAGTGCAGTATGACATTCGAT
TATGAAGGCGGGAATGGGGAGCTGGACAAGCAGGTCGTGCAGTATATCGC
TGACAGTGGTGCAACATGCCATATGACGCCAGACGCCGACGGTCTTACAA
ACTATCGAAAGTGCAGCCAGCCACTAAGCCTGGCTAACGGTAGCAAAATC
TCTACCGCAGGTTACGGTGACCTCGTCGTAGCCTTCCGCAATAACAACAA
ATGGGTACGCGTAGAACTGCAGAACGTAGCGTACGTACCCATGTTGAGCT
ACAACACCCTCTCCCTCACATCGCTGGCACAAAAAGGACAAGGGTCCGTT
GTTGAGAAGAATAAAGTGACTCTCCAGCCCAAATGTGCTAGGTGTTCAGG
TTTTGGCCACGTGGAGAGCACGTGTTCATCAGACGCGACGGTACTGGTGA
TGGAGCCAGACGATGATTCGGCGGAAGATCGGGCATTCGTGGCGTGTGAA
ACAGGCAAGTGCAGTATGACATTCGATTATGAAGGCGGGAATGGGGAGCT
GGACAAGCAGGTCGTGCAGTATATCGCTGACAGTGGTGCAACATGCCATA
TGACGCCAGACGCCGACGGTCTTACAAACTATCGAAAGTGCAGCCAGCCA
CTAAGCCTGGCTAACGGTAGCAAAATCTCTACCGCAGGTTACGGTGACCT
CGTCGTAGCCTTCCGCAATAACAACAAATGGGTACGCGTAGAACTGCAGA
ACGTAGCGTACGTACCCATGTTGAGCTACAACACCCTCTCCCTCACATCG
CTGGCACAAAAAGGACAAGGGTCCGTTGTTGAGAAGAATAAAGTGACTCT
CCAG
back to top