mRNA_H-elongata_contig13666.2585.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A6H5KGX8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX8_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.040e-24 Identity = 66/166 (39.76%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 1 PKCARCSGFGHVESTCSSDATVL--VME--PDDDSAEDRAF--VACETGKCSMTFDYEGGNGELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSK--ISTAGYGDLVVAFRNNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQGSVVEKNKVTL 474
P+C + +G+GH E C+ + VL VM DDDSA D+AF VA GKC + G EL + V+QY+AD+ ATC M A+ NYR+C+ + G K + GYGD+VV ++ WV + + N +VP YN LSLT+LA++G +K +TL
Sbjct: 371 PRCGKRAGWGHNEDKCTREEAVLAQVMSYVSDDDSATDQAFCVVAQPPGKCGIVDLGLVGVEELGQDVMQYVADTAATCSMFRCANAFVNYRECNGWVRGIGGDKAPVPLLGYGDVVVVLKSEGGWVPLPIPNAVHVPEAPYNLLSLTTLAEEGHKYSGQKGGLTL 536
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A6S7H2J3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H2J3_PARCT) HSP 1 Score: 61.6 bits (148), Expect = 4.160e-8 Identity = 44/166 (26.51%), Postives = 72/166 (43.37%), Query Frame = 1
Query: 1 PKCARCSGFGHVESTCSSDATVLVMEPDDDSAE--------DRAFVACETGKCSMTFDYEGGN-------GELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQP--LSLANGSKISTAGYGDLVVAFR--NNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQ 441
PKC C FGH++ C + ++ D D +E +A A ++ + + D + G ++ + +I DSGATCHM D +P ++L +G + G G + N K LQ+V YVP LSYN +S++ + G+
Sbjct: 218 PKCYHCGKFGHIKRNCRE---LNSLKHDGDKSEFNEGIDNKHKANTAAKSRRTDSSSDSDEGGLMVNHAFSSVNGRTNTWIIDSGATCHMCNDVSQFVKLHNLEKPEDVTLGDGHVVKATGRGVVKTKIESPNGRKGKSCVLQDVLYVPSLSYNLVSVSKATKSGK 380
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A6H5K905_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K905_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 5.590e-8 Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
Query: 22 GFGHVESTCSSDATVLVM----EPDDDSAEDRAF--VACETGKCSMTFDYEGGNGELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSK--ISTAGYGDLVVAFRN 342
G+G+ + C++ VL + D DS E++AF VA G+C G E + V+QY+AD+ ATC M A+ NYR+C + G K I GYGD++V R+
Sbjct: 150 GWGYTKDKCATQEVVLAQVVYCDSDMDSVENQAFCPVAGFQGECGTANVDLVGATEHGQDVMQYVADTAATCSMFRCANAFVNYRECGGWVKGTGGDKAPIPLLGYGDVIVVLRS 264
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: A0A026WX30_OOCBI (Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WX30_OOCBI) HSP 1 Score: 60.8 bits (146), Expect = 7.370e-8 Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWVRVELQNVAYVPMLSYNTLSLTSLAQKGQGSVVEKN 462
+ DSGA+ HMTP + LT++++ +P+++ G+ I G GD+ + + KW L+ V YVP L N S++S+A K +++K+
Sbjct: 145 WYLDSGASEHMTPRKEWLTDFKRIKKPVTIG-GTTIDATGIGDIKLETFDGKKWKPCVLKKVLYVPNLKLNLFSVSSIADKDCKIIIDKD 233
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UPN0_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPN0_SALR5) HSP 1 Score: 58.9 bits (141), Expect = 2.010e-7 Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
++ADSGAT H+T DA LTNY +Q +++AN ++ G GD V+ + + L+NV +VP + YN L+L + + +G+ V
Sbjct: 94 WLADSGATAHITSDASLLTNYIAVTQHVTVANNQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 181
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UP05_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UP05_SALR5) HSP 1 Score: 59.3 bits (142), Expect = 2.700e-7 Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 1
Query: 166 GELDKQVVQYIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
G + +Q+ ++ADSGAT H+T DA LTNY +Q +++AN ++ G GD V+ + + L+NV +VP + YN L+L + + +G+ +
Sbjct: 14 GPVSQQL--WLADSGATAHITSDASLLTNYIAVTQHVTVANNQAVTVIGKGDAVLRVTGTDGVPGTITLKNVLHVPDIKYNLLALNLVTRARRGASI 108
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UNK2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNK2_SALR5) HSP 1 Score: 58.9 bits (141), Expect = 3.590e-7 Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
++ADSGAT H+T DA LTNY +Q +++AN ++ G GD V+ + + L+NV +VP + YN L+L + + +G+ V
Sbjct: 83 WLADSGATAHITSDASLLTNYIAVTQHVTVANNQTVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNILALNLVTRARRGASV 170
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2TWR2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWR2_SALR5) HSP 1 Score: 58.5 bits (140), Expect = 3.670e-7 Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
++ADSGAT H+T DA LTNY +Q +++AN ++ G GD V+ + + L+NV +VP + YN L+L + + +G+ V
Sbjct: 96 WLADSGATAHITNDASLLTNYIAVTQHVTVANSQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 183
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UPN1_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPN1_SALR5) HSP 1 Score: 58.9 bits (141), Expect = 3.680e-7 Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
++ADSGAT H+T DA LTNY +Q +++AN ++ G GD V+ + + L+NV +VP + YN L+L + + +G+ V
Sbjct: 428 WLADSGATAHITSDASLLTNYIAVTQHVTVANNQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 515
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Match: F2UN34_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UN34_SALR5) HSP 1 Score: 58.9 bits (141), Expect = 3.760e-7 Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 193 YIADSGATCHMTPDADGLTNYRKCSQPLSLANGSKISTAGYGDLVVAFRNNNKWV-RVELQNVAYVPMLSYNTLSLTSLAQKGQGSVV 453
++ADSGAT H+T DA LTNY +Q +++AN ++ G GD V+ + + L+NV +VP + YN L+L + + +G+ V
Sbjct: 52 WLADSGATAHITSDASLLTNYIAVTQHVTVANSQAVTAIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASV 139 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13666.2585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13666.2585.1 >prot_H-elongata_contig13666.2585.1 ID=prot_H-elongata_contig13666.2585.1|Name=mRNA_H-elongata_contig13666.2585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp PKCARCSGFGHVESTCSSDATVLVMEPDDDSAEDRAFVACETGKCSMTFDback to top mRNA from alignment at H-elongata_contig13666:6976..7452- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13666.2585.1 ID=mRNA_H-elongata_contig13666.2585.1|Name=mRNA_H-elongata_contig13666.2585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig13666:6976..7452- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13666:6976..7452- >mRNA_H-elongata_contig13666.2585.1 ID=mRNA_H-elongata_contig13666.2585.1|Name=mRNA_H-elongata_contig13666.2585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig13666:6976..7452- (Himanthalia elongata Himel1 dioecious)back to top |