mRNA_H-elongata_contig13622.2559.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.940e-32 Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMKAMLLSGITGTRG 336
T IGKWKGIER AD R + + QQ +LSGDVLVFDRGQKCW+GPARSLR LACG ED LSAV EPETC Y AVLETP ACS + L++G++G G
Sbjct: 558 TLIGKWKGIERAEADDVRQLQQQH------------QQLILSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRDALIAGVSGGAG 657
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI) HSP 1 Score: 125 bits (314), Expect = 3.160e-31 Identity = 65/112 (58.04%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMKAMLLSGITGTRG 336
T IGKWKGIER AD R + + QQ +LSGDVLVFDRGQKCW+GPARSLR LACG ED LSAV EPETC Y AVLETP ACS + L++ + G G
Sbjct: 501 TLIGKWKGIERAKADDMRQLQQQH------------QQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRDALIASVAGGAG 600
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A7S4DL14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL14_HETAK) HSP 1 Score: 73.6 bits (179), Expect = 3.730e-14 Identity = 38/94 (40.43%), Postives = 47/94 (50.00%), Query Frame = 1
Query: 4 SIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
++G WKG + D D S + L+F+ G KCW+GP RS+R L C D L +VEEPE CAY AVL TPAAC
Sbjct: 66 NLGNWKGFGEI--------------------DKPDNLHNYSEEGLLFEGGDKCWNGPQRSMRVLLVCSERDKLLSVEEPEVCAYRAVLATPAAC 139
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: K3X1Z1_GLOUD (Glucosidase 2 subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1Z1_GLOUD) HSP 1 Score: 68.6 bits (166), Expect = 3.570e-11 Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 97 DNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMKA 303
DNGD+ + F +GQKCW+GP RS++ LACG E+ + +V+EP TC Y +L+TP AC+ D+ A
Sbjct: 545 DNGDKDYAR----MQFIKGQKCWNGPERSVQVRLACGQENEIVSVDEPSTCVYEMLLQTPLACTQDVLA 609
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A7S0CNR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CNR4_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.940e-10 Identity = 35/94 (37.23%), Postives = 43/94 (45.74%), Query Frame = 1
Query: 1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAA 282
T++GKW G E+ + P LVF G KCW+GP RS F CGPE L + +EPETC Y V+ETP A
Sbjct: 117 TNLGKWHGFEQSNNRP----------------------------ALVFKDGDKCWNGPKRSAWIFPICGPETKLISADEPETCKYEFVMETPIA 182
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A2R5GW61_9STRA (Glucosidase 2 subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW61_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 7.960e-10 Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
TS+GK+KG S+ P V +P + PL L F G KCW+GP RS+ CG E+ + +V+EP TCAY V+ETP AC
Sbjct: 497 TSLGKFKGWS-SSSGPVCVEDPVTG-----------EMPLQGCASLSFADGAKCWNGPKRSVDVRFRCGIENEIISVDEPSTCAYAIVVETPFAC 579
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A7S0NJN8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJN8_MICPS) HSP 1 Score: 60.8 bits (146), Expect = 4.580e-9 Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 133 VLVFDRGQKCWHGPARSLRAFLACGPE-DVLSAVEEPETCAYTAVLETPAACSP 291
+VFD G++CW+GPARS+ L CG + L+ EEP C Y A L TPAAC P
Sbjct: 104 TMVFDGGERCWNGPARSITVSLRCGGGGNRLADAEEPSRCEYAATLYTPAACDP 157
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A6A6LUN3_HEVBR (Glucosidase 2 subunit beta n=5 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LUN3_HEVBR) HSP 1 Score: 62.4 bits (150), Expect = 5.260e-9 Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 133 VLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
++F G +CW+GPARSLR L CG ++ L+ ++EP C Y A L TPA C
Sbjct: 659 TMIFSNGDRCWNGPARSLRVKLRCGLKNELTDIDEPSRCEYVAFLSTPALC 709
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: C1EJ26_MICCC (Glucosidase 2 subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJ26_MICCC) HSP 1 Score: 61.2 bits (147), Expect = 1.280e-8 Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 103 GDQQPLLSGD--VLVFDRGQKCWHGPARSLRAFLACGPE-DVLSAVEEPETCAYTAVLETPAACSP 291
G QP+ D +VF+ G++CW+GPARS+ L CG + L+ VEEP C Y A L TPAAC P
Sbjct: 400 GTMQPVDVKDPRTMVFNGGERCWNGPARSITVSLRCGGGGNKLADVEEPSRCEYAAKLYTPAACDP 465
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: UPI000B76DE81 (glucosidase 2 subunit beta-like isoform X4 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B76DE81) HSP 1 Score: 61.2 bits (147), Expect = 1.300e-8 Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 133 VLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
++F G +CW+GPARSL+ L CG ++ L+ ++EP C Y A L TPA C
Sbjct: 471 TMIFSNGDRCWNGPARSLKVKLRCGLKNELTDIDEPSRCEYVAFLSTPALC 521 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13622.2559.1 >prot_H-elongata_contig13622.2559.1 ID=prot_H-elongata_contig13622.2559.1|Name=mRNA_H-elongata_contig13622.2559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRback to top mRNA from alignment at H-elongata_contig13622:5920..6255+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13622.2559.1 ID=mRNA_H-elongata_contig13622.2559.1|Name=mRNA_H-elongata_contig13622.2559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig13622:5920..6255+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13622:5920..6255+ >mRNA_H-elongata_contig13622.2559.1 ID=mRNA_H-elongata_contig13622.2559.1|Name=mRNA_H-elongata_contig13622.2559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig13622:5920..6255+ (Himanthalia elongata Himel1 dioecious)back to top |