mRNA_H-elongata_contig13622.2559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13622.2559.1
Unique NamemRNA_H-elongata_contig13622.2559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.940e-32
Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMKAMLLSGITGTRG 336
            T IGKWKGIER  AD  R +  +             QQ +LSGDVLVFDRGQKCW+GPARSLR  LACG ED LSAV EPETC Y AVLETP ACS   +  L++G++G  G
Sbjct:  558 TLIGKWKGIERAEADDVRQLQQQH------------QQLILSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRDALIAGVSGGAG 657          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.160e-31
Identity = 65/112 (58.04%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMKAMLLSGITGTRG 336
            T IGKWKGIER  AD  R +  +             QQ +LSGDVLVFDRGQKCW+GPARSLR  LACG ED LSAV EPETC Y AVLETP ACS   +  L++ + G  G
Sbjct:  501 TLIGKWKGIERAKADDMRQLQQQH------------QQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRDALIASVAGGAG 600          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A7S4DL14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL14_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 3.730e-14
Identity = 38/94 (40.43%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    4 SIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
            ++G WKG   +                    D  D     S + L+F+ G KCW+GP RS+R  L C   D L +VEEPE CAY AVL TPAAC
Sbjct:   66 NLGNWKGFGEI--------------------DKPDNLHNYSEEGLLFEGGDKCWNGPQRSMRVLLVCSERDKLLSVEEPEVCAYRAVLATPAAC 139          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: K3X1Z1_GLOUD (Glucosidase 2 subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1Z1_GLOUD)

HSP 1 Score: 68.6 bits (166), Expect = 3.570e-11
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   97 DNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMKA 303
            DNGD+        + F +GQKCW+GP RS++  LACG E+ + +V+EP TC Y  +L+TP AC+ D+ A
Sbjct:  545 DNGDKDYAR----MQFIKGQKCWNGPERSVQVRLACGQENEIVSVDEPSTCVYEMLLQTPLACTQDVLA 609          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A7S0CNR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CNR4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.940e-10
Identity = 35/94 (37.23%), Postives = 43/94 (45.74%), Query Frame = 1
Query:    1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAA 282
            T++GKW G E+ +  P                             LVF  G KCW+GP RS   F  CGPE  L + +EPETC Y  V+ETP A
Sbjct:  117 TNLGKWHGFEQSNNRP----------------------------ALVFKDGDKCWNGPKRSAWIFPICGPETKLISADEPETCKYEFVMETPIA 182          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A2R5GW61_9STRA (Glucosidase 2 subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW61_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.960e-10
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1
Query:    1 TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
            TS+GK+KG    S+ P  V +P              + PL     L F  G KCW+GP RS+     CG E+ + +V+EP TCAY  V+ETP AC
Sbjct:  497 TSLGKFKGWS-SSSGPVCVEDPVTG-----------EMPLQGCASLSFADGAKCWNGPKRSVDVRFRCGIENEIISVDEPSTCAYAIVVETPFAC 579          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A7S0NJN8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJN8_MICPS)

HSP 1 Score: 60.8 bits (146), Expect = 4.580e-9
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query:  133 VLVFDRGQKCWHGPARSLRAFLACGPE-DVLSAVEEPETCAYTAVLETPAACSP 291
             +VFD G++CW+GPARS+   L CG   + L+  EEP  C Y A L TPAAC P
Sbjct:  104 TMVFDGGERCWNGPARSITVSLRCGGGGNRLADAEEPSRCEYAATLYTPAACDP 157          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: A0A6A6LUN3_HEVBR (Glucosidase 2 subunit beta n=5 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LUN3_HEVBR)

HSP 1 Score: 62.4 bits (150), Expect = 5.260e-9
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  133 VLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
             ++F  G +CW+GPARSLR  L CG ++ L+ ++EP  C Y A L TPA C
Sbjct:  659 TMIFSNGDRCWNGPARSLRVKLRCGLKNELTDIDEPSRCEYVAFLSTPALC 709          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: C1EJ26_MICCC (Glucosidase 2 subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJ26_MICCC)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-8
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  103 GDQQPLLSGD--VLVFDRGQKCWHGPARSLRAFLACGPE-DVLSAVEEPETCAYTAVLETPAACSP 291
            G  QP+   D   +VF+ G++CW+GPARS+   L CG   + L+ VEEP  C Y A L TPAAC P
Sbjct:  400 GTMQPVDVKDPRTMVFNGGERCWNGPARSITVSLRCGGGGNKLADVEEPSRCEYAAKLYTPAACDP 465          
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Match: UPI000B76DE81 (glucosidase 2 subunit beta-like isoform X4 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B76DE81)

HSP 1 Score: 61.2 bits (147), Expect = 1.300e-8
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  133 VLVFDRGQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAAC 285
             ++F  G +CW+GPARSL+  L CG ++ L+ ++EP  C Y A L TPA C
Sbjct:  471 TMIFSNGDRCWNGPARSLKVKLRCGLKNELTDIDEPSRCEYVAFLSTPALC 521          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13622.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KIQ9_9PHAE1.940e-3258.93Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
D7G0Y2_ECTSI3.160e-3158.04Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A7S4DL14_HETAK3.730e-1440.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3X1Z1_GLOUD3.570e-1146.38Glucosidase 2 subunit beta n=1 Tax=Globisporangium... [more]
A0A7S0CNR4_9STRA2.940e-1037.23Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A2R5GW61_9STRA7.960e-1040.00Glucosidase 2 subunit beta n=1 Tax=Hondaea ferment... [more]
A0A7S0NJN8_MICPS4.580e-951.85Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A6A6LUN3_HEVBR5.260e-949.02Glucosidase 2 subunit beta n=5 Tax=Hevea brasilien... [more]
C1EJ26_MICCC1.280e-848.48Glucosidase 2 subunit beta n=1 Tax=Micromonas comm... [more]
UPI000B76DE811.300e-847.06glucosidase 2 subunit beta-like isoform X4 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13622contigH-elongata_contig13622:5920..6255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog529818.AMSG_01359T0
KEGG koko:K05546,ko:K08288
KEGG ReactionR05980,R05981
KEGG Pathwayko00510,ko01100,ko04141,map00510,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0034645,GO:0036211,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0070013,GO:0070085,GO:0071704,GO:0098542,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.N-glycan processing
EggNOG OGsKOG2397@1,KOG2397@2759
EC3.2.1.84
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04091
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionalpha-Glucosidase II, beta subunit
Ec32 orthologEc-23_001860.1
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.7470047-CDS-H-elongata_contig13622:5919..62551622929808.7470047-CDS-H-elongata_contig13622:5919..6255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13622 5920..6255 +
1691679165.6279473-CDS-H-elongata_contig13622:5919..62551691679165.6279473-CDS-H-elongata_contig13622:5919..6255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13622 5920..6255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13622.2559.1prot_H-elongata_contig13622.2559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13622 5920..6255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13622.2559.1

>prot_H-elongata_contig13622.2559.1 ID=prot_H-elongata_contig13622.2559.1|Name=mRNA_H-elongata_contig13622.2559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
TSIGKWKGIERVSADPTRVINPKDRDHRGRYDDNGDQQPLLSGDVLVFDR
GQKCWHGPARSLRAFLACGPEDVLSAVEEPETCAYTAVLETPAACSPDMK
AMLLSGITGTRG
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mRNA from alignment at H-elongata_contig13622:5920..6255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13622.2559.1 ID=mRNA_H-elongata_contig13622.2559.1|Name=mRNA_H-elongata_contig13622.2559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig13622:5920..6255+ (Himanthalia elongata Himel1 dioecious)
ACTTCCATCGGAAAGTGGAAAGGCATCGAGCGCGTGAGTGCGGATCCGAC TCGTGTCATTAACCCCAAAGACCGTGACCACCGAGGGAGGTACGATGACA ATGGGGACCAGCAGCCGCTTCTGAGTGGCGATGTCCTCGTGTTCGACCGA GGCCAGAAGTGTTGGCATGGTCCCGCTCGATCTCTCCGAGCTTTCCTCGC GTGTGGCCCGGAGGATGTGCTCTCGGCGGTAGAAGAACCCGAGACATGCG CGTACACGGCGGTTTTGGAAACCCCCGCGGCGTGTTCTCCCGACATGAAG GCCATGCTGCTGAGCGGGATCACGGGGACTCGTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig13622:5920..6255+

>mRNA_H-elongata_contig13622.2559.1 ID=mRNA_H-elongata_contig13622.2559.1|Name=mRNA_H-elongata_contig13622.2559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig13622:5920..6255+ (Himanthalia elongata Himel1 dioecious)
ACTTCCATCGGAAAGTGGAAAGGCATCGAGCGCGTGAGTGCGGATCCGAC
TCGTGTCATTAACCCCAAAGACCGTGACCACCGAGGGAGGTACGATGACA
ATGGGGACCAGCAGCCGCTTCTGAGTGGCGATGTCCTCGTGTTCGACCGA
GGCCAGAAGTGTTGGCATGGTCCCGCTCGATCTCTCCGAGCTTTCCTCGC
GTGTGGCCCGGAGGATGTGCTCTCGGCGGTAGAAGAACCCGAGACATGCG
CGTACACGGCGGTTTTGGAAACCCCCGCGGCGTGTTCTCCCGACATGAAG
GCCATGCTGCTGAGCGGGATCACGGGGACTCGTGGCACTTCCATCGGAAA
GTGGAAAGGCATCGAGCGCGTGAGTGCGGATCCGACTCGTGTCATTAACC
CCAAAGACCGTGACCACCGAGGGAGGTACGATGACAATGGGGACCAGCAG
CCGCTTCTGAGTGGCGATGTCCTCGTGTTCGACCGAGGCCAGAAGTGTTG
GCATGGTCCCGCTCGATCTCTCCGAGCTTTCCTCGCGTGTGGCCCGGAGG
ATGTGCTCTCGGCGGTAGAAGAACCCGAGACATGCGCGTACACGGCGGTT
TTGGAAACCCCCGCGGCGTGTTCTCCCGACATGAAGGCCATGCTGCTGAG
CGGGATCACGGGGACTCGTGGC
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