mRNA_H-elongata_contig136118.2556.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: D7FI54_ECTSI (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI54_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.120e-67 Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
VFMGMGEPLANYKNV++AVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRER AL+PVNRRFPLSEL+DACRE+VD+SGRRMTFEWALIQGENDSAEV
Sbjct: 138 VFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWALIQGENDSAEV 251
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A6H5KMC8_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC8_9PHAE) HSP 1 Score: 215 bits (548), Expect = 7.670e-65 Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
VFMGMGEPLANYKNV++AVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRER AL+PVNRRFPLSEL+DACRE+VD+SGRRMTFEWALIQGENDSAEV
Sbjct: 422 VFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWALIQGENDSAEV 535
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A836CIK3_9STRA (Radical SAM core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK3_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.610e-58 Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDS 333
VFMGMGEPLANY NV++AVRRIN++LGIGARHITISTVGLVPRI RL+QE++QVKLAVSLHAAND+ERSAL+PVNRRFPL+EL+DAC+ +VD SGRRMTFEWALI GENDS
Sbjct: 148 VFMGMGEPLANYANVMEAVRRINSQLGIGARHITISTVGLVPRIQRLAQEDLQVKLAVSLHAANDKERSALLPVNRRFPLAELMDACKAYVDQSGRRMTFEWALIHGENDS 258
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S0HUF2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HUF2_9CRYP) HSP 1 Score: 171 bits (434), Expect = 1.320e-51 Identity = 81/114 (71.05%), Postives = 100/114 (87.72%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
V MGMGEPL NY NV++AVRRIN ++GIGARHITISTVGLVPRI RL+ EN+Q+KLAVSLHAA D ER+A++PVN RFPLSEL++ C+ +V+ +GRR++FEWALI G+NDS EV
Sbjct: 71 VLMGMGEPLGNYNNVMEAVRRINQDIGIGARHITISTVGLVPRIRRLADENMQIKLAVSLHAATDEERNAIMPVNLRFPLSELMETCKFYVEKTGRRISFEWALIAGQNDSPEV 184
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S0MAH2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MAH2_9CRYP) HSP 1 Score: 167 bits (423), Expect = 3.730e-50 Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
V MGMGEPL NY NV+ AVRR+N E+GIGARHITISTVGLVPRI RL++E +Q+KLAVSLHAA D RSA++PVN RFPL EL+ ACRE+V ++GRR+TFEWALI G ND+ +
Sbjct: 33 VLMGMGEPLGNYNNVLTAVRRMNDEIGIGARHITISTVGLVPRIRRLAEEGLQIKLAVSLHAATDEARSAIMPVNLRFPLKELMAACREYVALTGRRVTFEWALIAGRNDTPDA 146
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S1DYM6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DYM6_HEMAN) HSP 1 Score: 172 bits (437), Expect = 9.440e-50 Identity = 84/114 (73.68%), Postives = 99/114 (86.84%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
V MGMGEPL NY NV+ AVRR+N E+GIGARHITISTVGLVPRI RLS+E +QVKLAVSLHAANDRERS ++PVN RFPLSEL+ ACR+++ +GRR+TFEWALI G+ND+ E
Sbjct: 262 VLMGMGEPLGNYNNVLTAVRRMNEEVGIGARHITISTVGLVPRIQRLSKEGLQVKLAVSLHAANDRERSEMMPVNVRFPLSELMQACRDYIRDTGRRITFEWALIAGKNDTPET 375
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: L1JN17_GUITC (Radical SAM core domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JN17_GUITC) HSP 1 Score: 170 bits (430), Expect = 4.140e-49 Identity = 79/114 (69.30%), Postives = 102/114 (89.47%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
V MGMGEPL NY NV++AVRRIN +LGIGARHITISTVGLVPRI RL++EN+Q+KLAVSLHAA+D ER+A++PVN RFPL++L++ C+ +V+ +GRR++FEWALI G+ND+ EV
Sbjct: 203 VLMGMGEPLGNYNNVMEAVRRINQDLGIGARHITISTVGLVPRIRRLAEENMQIKLAVSLHAASDEERNAIMPVNLRFPLADLMETCKFYVEKTGRRISFEWALIAGQNDTPEV 316
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S3XS11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS11_HETAK) HSP 1 Score: 165 bits (417), Expect = 7.170e-49 Identity = 77/114 (67.54%), Postives = 101/114 (88.60%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
VFMGMGEPL NYKNV+ AVR IN ++GIGARHITISTVGLVPRI +L++E++Q+KLA+SLHAAND +RSAL+PVNRR+ L++L+DAC ++ ++ RR+TFE+ALI GEND+ +V
Sbjct: 63 VFMGMGEPLNNYKNVMKAVRFINQDIGIGARHITISTVGLVPRIHKLAEEDVQIKLAISLHAANDEDRSALLPVNRRYNLNQLMDACENYIKITNRRITFEYALIAGENDTPQV 176
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7Y5Q9W6_9CHLR (Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Y5Q9W6_9CHLR) HSP 1 Score: 164 bits (415), Expect = 1.880e-47 Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAE 339
V MGMGEP NY V AVRR+ +LGIGARHITISTVGLVP I R ++E +QVKLAVSLHAA D+ERSAL+PVNRR+PL+EL+DACR++ + SGRRM+FEW LIQG+ND+ E
Sbjct: 156 VLMGMGEPFHNYDASVAAVRRLMNDLGIGARHITISTVGLVPMIRRFAEEGLQVKLAVSLHAATDKERSALLPVNRRYPLNELIDACRDYTERSGRRMSFEWTLIQGQNDTPE 268
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A399YX88_9CHLR (Probable dual-specificity RNA methyltransferase RlmN n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399YX88_9CHLR) HSP 1 Score: 160 bits (406), Expect = 3.290e-46 Identity = 78/113 (69.03%), Postives = 95/113 (84.07%), Query Frame = 1
Query: 1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAE 339
V MGMGEP NY+ + AVRR+ +LGIGARHITISTVGLVP+I R + E +QV+LA+SLHAA D ERSAL+P+N+R+PL+ELLDACRE V+ +GRR+TFEWALI GENDS E
Sbjct: 157 VLMGMGEPFHNYEASLAAVRRLMADLGIGARHITISTVGLVPQIRRFADEALQVRLAISLHAATDDERSALLPINKRYPLAELLDACREVVEKTGRRVTFEWALIAGENDSPE 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136118.2556.1 >prot_H-elongata_contig136118.2556.1 ID=prot_H-elongata_contig136118.2556.1|Name=mRNA_H-elongata_contig136118.2556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp MGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIback to top mRNA from alignment at H-elongata_contig136118:330..1257- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136118.2556.1 ID=mRNA_H-elongata_contig136118.2556.1|Name=mRNA_H-elongata_contig136118.2556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig136118:330..1257- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136118:330..1257- >mRNA_H-elongata_contig136118.2556.1 ID=mRNA_H-elongata_contig136118.2556.1|Name=mRNA_H-elongata_contig136118.2556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig136118:330..1257- (Himanthalia elongata Himel1 dioecious)back to top |