mRNA_H-elongata_contig136118.2556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136118.2556.1
Unique NamemRNA_H-elongata_contig136118.2556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: D7FI54_ECTSI (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI54_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.120e-67
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            VFMGMGEPLANYKNV++AVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRER AL+PVNRRFPLSEL+DACRE+VD+SGRRMTFEWALIQGENDSAEV
Sbjct:  138 VFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWALIQGENDSAEV 251          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A6H5KMC8_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 7.670e-65
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            VFMGMGEPLANYKNV++AVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRER AL+PVNRRFPLSEL+DACRE+VD+SGRRMTFEWALIQGENDSAEV
Sbjct:  422 VFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWALIQGENDSAEV 535          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A836CIK3_9STRA (Radical SAM core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.610e-58
Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDS 333
            VFMGMGEPLANY NV++AVRRIN++LGIGARHITISTVGLVPRI RL+QE++QVKLAVSLHAAND+ERSAL+PVNRRFPL+EL+DAC+ +VD SGRRMTFEWALI GENDS
Sbjct:  148 VFMGMGEPLANYANVMEAVRRINSQLGIGARHITISTVGLVPRIQRLAQEDLQVKLAVSLHAANDKERSALLPVNRRFPLAELMDACKAYVDQSGRRMTFEWALIHGENDS 258          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S0HUF2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HUF2_9CRYP)

HSP 1 Score: 171 bits (434), Expect = 1.320e-51
Identity = 81/114 (71.05%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            V MGMGEPL NY NV++AVRRIN ++GIGARHITISTVGLVPRI RL+ EN+Q+KLAVSLHAA D ER+A++PVN RFPLSEL++ C+ +V+ +GRR++FEWALI G+NDS EV
Sbjct:   71 VLMGMGEPLGNYNNVMEAVRRINQDIGIGARHITISTVGLVPRIRRLADENMQIKLAVSLHAATDEERNAIMPVNLRFPLSELMETCKFYVEKTGRRISFEWALIAGQNDSPEV 184          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S0MAH2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MAH2_9CRYP)

HSP 1 Score: 167 bits (423), Expect = 3.730e-50
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            V MGMGEPL NY NV+ AVRR+N E+GIGARHITISTVGLVPRI RL++E +Q+KLAVSLHAA D  RSA++PVN RFPL EL+ ACRE+V ++GRR+TFEWALI G ND+ + 
Sbjct:   33 VLMGMGEPLGNYNNVLTAVRRMNDEIGIGARHITISTVGLVPRIRRLAEEGLQIKLAVSLHAATDEARSAIMPVNLRFPLKELMAACREYVALTGRRVTFEWALIAGRNDTPDA 146          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S1DYM6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DYM6_HEMAN)

HSP 1 Score: 172 bits (437), Expect = 9.440e-50
Identity = 84/114 (73.68%), Postives = 99/114 (86.84%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            V MGMGEPL NY NV+ AVRR+N E+GIGARHITISTVGLVPRI RLS+E +QVKLAVSLHAANDRERS ++PVN RFPLSEL+ ACR+++  +GRR+TFEWALI G+ND+ E 
Sbjct:  262 VLMGMGEPLGNYNNVLTAVRRMNEEVGIGARHITISTVGLVPRIQRLSKEGLQVKLAVSLHAANDRERSEMMPVNVRFPLSELMQACRDYIRDTGRRITFEWALIAGKNDTPET 375          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: L1JN17_GUITC (Radical SAM core domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JN17_GUITC)

HSP 1 Score: 170 bits (430), Expect = 4.140e-49
Identity = 79/114 (69.30%), Postives = 102/114 (89.47%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            V MGMGEPL NY NV++AVRRIN +LGIGARHITISTVGLVPRI RL++EN+Q+KLAVSLHAA+D ER+A++PVN RFPL++L++ C+ +V+ +GRR++FEWALI G+ND+ EV
Sbjct:  203 VLMGMGEPLGNYNNVMEAVRRINQDLGIGARHITISTVGLVPRIRRLAEENMQIKLAVSLHAASDEERNAIMPVNLRFPLADLMETCKFYVEKTGRRISFEWALIAGQNDTPEV 316          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7S3XS11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS11_HETAK)

HSP 1 Score: 165 bits (417), Expect = 7.170e-49
Identity = 77/114 (67.54%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAEV 342
            VFMGMGEPL NYKNV+ AVR IN ++GIGARHITISTVGLVPRI +L++E++Q+KLA+SLHAAND +RSAL+PVNRR+ L++L+DAC  ++ ++ RR+TFE+ALI GEND+ +V
Sbjct:   63 VFMGMGEPLNNYKNVMKAVRFINQDIGIGARHITISTVGLVPRIHKLAEEDVQIKLAISLHAANDEDRSALLPVNRRYNLNQLMDACENYIKITNRRITFEYALIAGENDTPQV 176          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A7Y5Q9W6_9CHLR (Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Y5Q9W6_9CHLR)

HSP 1 Score: 164 bits (415), Expect = 1.880e-47
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAE 339
            V MGMGEP  NY   V AVRR+  +LGIGARHITISTVGLVP I R ++E +QVKLAVSLHAA D+ERSAL+PVNRR+PL+EL+DACR++ + SGRRM+FEW LIQG+ND+ E
Sbjct:  156 VLMGMGEPFHNYDASVAAVRRLMNDLGIGARHITISTVGLVPMIRRFAEEGLQVKLAVSLHAATDKERSALLPVNRRYPLNELIDACRDYTERSGRRMSFEWTLIQGQNDTPE 268          
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Match: A0A399YX88_9CHLR (Probable dual-specificity RNA methyltransferase RlmN n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399YX88_9CHLR)

HSP 1 Score: 160 bits (406), Expect = 3.290e-46
Identity = 78/113 (69.03%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 VFMGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEWALIQGENDSAE 339
            V MGMGEP  NY+  + AVRR+  +LGIGARHITISTVGLVP+I R + E +QV+LA+SLHAA D ERSAL+P+N+R+PL+ELLDACRE V+ +GRR+TFEWALI GENDS E
Sbjct:  157 VLMGMGEPFHNYEASLAAVRRLMADLGIGARHITISTVGLVPQIRRFADEALQVRLAISLHAATDDERSALLPINKRYPLAELLDACREVVEKTGRRVTFEWALIAGENDSPE 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136118.2556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI54_ECTSI1.120e-6793.86Radical SAM core domain-containing protein n=1 Tax... [more]
A0A6H5KMC8_9PHAE7.670e-6593.86Radical SAM core domain-containing protein n=1 Tax... [more]
A0A836CIK3_9STRA1.610e-5883.78Radical SAM core domain-containing protein n=1 Tax... [more]
A0A7S0HUF2_9CRYP1.320e-5171.05Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0MAH2_9CRYP3.730e-5070.18Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1DYM6_HEMAN9.440e-5073.68Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1JN17_GUITC4.140e-4969.30Radical SAM core domain-containing protein n=2 Tax... [more]
A0A7S3XS11_HETAK7.170e-4967.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7Y5Q9W6_9CHLR1.880e-4769.91Probable dual-specificity RNA methyltransferase Rl... [more]
A0A399YX88_9CHLR3.290e-4669.03Probable dual-specificity RNA methyltransferase Rl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136118contigH-elongata_contig136118:330..1257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue4.6e-52
Seed eggNOG ortholog2880.D7FI54
KEGG koko:K06941
EggNOG free text desc.Radical SAM superfamily
EggNOG OGs2QSIE@2759,COG0820@1
Ec32 ortholog descriptionRibosomal RNA large subunit methyltransferase RlmN/Cfr
Ec32 orthologEc-10_003600.1
EC2.1.1.192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136118.2556.1prot_H-elongata_contig136118.2556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136118 330..1251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.5667112-CDS-H-elongata_contig136118:329..5121622929808.5667112-CDS-H-elongata_contig136118:329..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136118 330..512 -
1691679165.521202-CDS-H-elongata_contig136118:329..5121691679165.521202-CDS-H-elongata_contig136118:329..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136118 330..512 -
1622929808.5781956-CDS-H-elongata_contig136118:1098..12511622929808.5781956-CDS-H-elongata_contig136118:1098..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136118 1099..1251 -
1691679165.5313106-CDS-H-elongata_contig136118:1098..12511691679165.5313106-CDS-H-elongata_contig136118:1098..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136118 1099..1251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.5879376-UTR-H-elongata_contig136118:1251..12571622929808.5879376-UTR-H-elongata_contig136118:1251..1257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136118 1252..1257 -
1691679165.5400078-UTR-H-elongata_contig136118:1251..12571691679165.5400078-UTR-H-elongata_contig136118:1251..1257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136118 1252..1257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136118.2556.1

>prot_H-elongata_contig136118.2556.1 ID=prot_H-elongata_contig136118.2556.1|Name=mRNA_H-elongata_contig136118.2556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MGMGEPLANYKNVVDAVRRINTELGIGARHITISTVGLVPRILRLSQENI
QVKLAVSLHAANDRERSALIPVNRRFPLSELLDACREFVDMSGRRMTFEW
ALIQGENDSAEV
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mRNA from alignment at H-elongata_contig136118:330..1257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136118.2556.1 ID=mRNA_H-elongata_contig136118.2556.1|Name=mRNA_H-elongata_contig136118.2556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig136118:330..1257- (Himanthalia elongata Himel1 dioecious)
GTCTTCATGGGAATGGGTGAACCCCTGGCCAACTACAAAAACGTGGTGGA TGCAGTGAGGCGCATCAATACGGAGCTGGGAATCGGGGCGAGGCATATCA CCATCAGCACCGTGGGCTTGGTCCCTCGCATACTGCGTCTTTCCCAGGAG AACATCCAGGTTCGAGCCTTGAGAGCCCTCGCGCTCGCCCGGGGCGTCGG TAACCATTGACACATACGGTGGCTTGCGAACCTGCTGTTGCCGAGCGTCT GCGGCGTTTTTTGGTCTGGTTCCCGTGGACGACTTTGTTGTTAATGTGCA ATTAGTTATCATTCATCGTCATCGTCCACCTCACGGTGTTGTTGACGAAT TGGTGGGCGAGCGCACCCCCACCTGTGATCGGCCTGCGCGTTTACGGACA AGGCTCTCGCACCTGCCCCCCGTTAGTTTGTAGTATGCCTTCGCACGTTC CCGTTTGTTGGTTGGAGGCGTTGCGGGCGGGCTCATTCTCACACGGGTCG TCTAGCTGCGTCTCCAGAGGACGTTGTGAGGAAGGTAGAGCTTCGGCGAG AGAGAGAGAGAGAGAAAAAAGGAAAAAAAAGAGCACGGTATATGCTACAT CGGTTTCCATCGAAAGCGCTGCCGTGAACCTCTTAACTTATTCCGGGTTT CCCCGCCACACCACCAAGGGCACCCTGCCCATTCGGACCAATCATCACAC GCACTGCCGCACATGAACTCCTTCCCGTCTTGCGATCGTCGGCAGGTGAA GCTGGCCGTAAGTCTCCACGCCGCTAACGACCGCGAGCGAAGTGCACTTA TCCCCGTGAACCGCCGATTCCCGCTGTCGGAACTGCTTGACGCGTGCCGC GAGTTCGTGGACATGTCGGGGAGGCGCATGACCTTCGAATGGGCGTTGAT CCAGGGAGAAAATGACAGCGCAGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig136118:330..1257-

>mRNA_H-elongata_contig136118.2556.1 ID=mRNA_H-elongata_contig136118.2556.1|Name=mRNA_H-elongata_contig136118.2556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig136118:330..1257- (Himanthalia elongata Himel1 dioecious)
ATGGGAATGGGTGAACCCCTGGCCAACTACAAAAACGTGGTGGATGCAGT
GAGGCGCATCAATACGGAGCTGGGAATCGGGGCGAGGCATATCACCATCA
GCACCGTGGGCTTGGTCCCTCGCATACTGCGTCTTTCCCAGGAGAACATC
CAGATGGGAATGGGTGAACCCCTGGCCAACTACAAAAACGTGGTGGATGC
AGTGAGGCGCATCAATACGGAGCTGGGAATCGGGGCGAGGCATATCACCA
TCAGCACCGTGGGCTTGGTCCCTCGCATACTGCGTCTTTCCCAGGAGAAC
ATCCAGGTGAAGCTGGCCGTAAGTCTCCACGCCGCTAACGACCGCGAGCG
AAGTGCACTTATCCCCGTGAACCGCCGATTCCCGCTGTCGGAACTGCTTG
ACGCGTGCCGCGAGTTCGTGGACATGTCGGGGAGGCGCATGACCTTCGAA
TGGGCGTTGATCCAGGGAGAAAATGACAGCGCAGAGGTAGTGAAGCTGGC
CGTAAGTCTCCACGCCGCTAACGACCGCGAGCGAAGTGCACTTATCCCCG
TGAACCGCCGATTCCCGCTGTCGGAACTGCTTGACGCGTGCCGCGAGTTC
GTGGACATGTCGGGGAGGCGCATGACCTTCGAATGGGCGTTGATCCAGGG
AGAAAATGACAGCGCAGAGGTA
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