mRNA_H-elongata_contig136041.2549.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 8.640e-23 Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
L VSGVLA VT GLVMSFYA GRISPGVE SMH FWS+ TYVANT IFFVSGLIIGD+ F++
Sbjct: 194 LHVSGVLAAVTAGLVMSFYAGGRISPGVEHSMHTFWSMATYVANTVIFFVSGLIIGDQAIFND 256
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: F0Y140_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN) HSP 1 Score: 71.2 bits (173), Expect = 6.600e-13 Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1
Query: 10 SGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
SGVL+VV G+ +S Y +GRIS VE+++H+FW VL +VANTA+FF+SGLI+ +VF
Sbjct: 251 SGVLSVVFAGMYLSRYGRGRISADVEENLHSFWGVLAHVANTAVFFLSGLIMSVKVF 307
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S1UK40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 9.090e-13 Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFF 183
L VSGV+AVV G +MS + R SPGVE ++H FW + Y ANT IFFVSGLI+ ++ F+
Sbjct: 276 LHVSGVIAVVMVGFLMSHVGKARFSPGVEHTLHGFWEIAGYGANTVIFFVSGLIMSEKSFY 336
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A5A8DG13_CAFRO (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DG13_CAFRO) HSP 1 Score: 69.3 bits (168), Expect = 3.180e-12 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDEYI 195
L SGVLAVVT G++MS + + +SP VE +MH FW +L+Y +NT IF +SG+II + + E+I
Sbjct: 273 LHTSGVLAVVTLGVLMSGFGKVHVSPEVEHAMHGFWEMLSYFSNTVIFLLSGVIIAHKTLYSEHI 337
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 8.050e-12 Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
L VSG+L+VV GL MSFY + RISP V++S+ FWS+ Y+ANT IFF++G R F
Sbjct: 298 LRVSGILSVVIAGLYMSFYGRPRISPSVQESLREFWSLWGYMANTVIFFLTGFTAATRAF 357
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S3ICJ9_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3ICJ9_9CILI) HSP 1 Score: 65.5 bits (158), Expect = 7.190e-11 Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
L VSG+LA+V GL MS + + I E+ +HNFW V+ Y+A T IF +SG+IIG++V DE
Sbjct: 251 LHVSGILAIVALGLYMSAWGRTSIDVNSEEVIHNFWQVIGYIAETMIFLLSGIIIGEKVLGDE 313
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S0CWA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CWA1_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 3.420e-10 Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 4 EVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
VSGVLAVVT GLVMS Y + IS +++H+FW VL Y+ NT IFFVSGL++ R+F
Sbjct: 69 HVSGVLAVVTLGLVMSKY-KSYISIASHETLHSFWEVLGYLINTLIFFVSGLLVAIRLF 126
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S0CTX3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTX3_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 3.440e-10 Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 4 EVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
VSGVLAVVT GLVMS Y + IS +++H+FW VL Y+ NT IFFVSGL++ R+F
Sbjct: 298 HVSGVLAVVTLGLVMSKY-KSYISIASHETLHSFWEVLGYLINTLIFFVSGLLVAIRLF 355
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: UPI001C4C7C57 (sodium/hydrogen exchanger 8-like isoform X3 n=4 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4C7C57) HSP 1 Score: 63.5 bits (153), Expect = 3.440e-10 Identity = 26/62 (41.94%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 4 EVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
+SGVLAV+T G+ + +A+ ++S+H+FW ++TY+ANT IF +SG++I D +F +E
Sbjct: 247 NISGVLAVMTLGMFFAAFARTAFKSDSQRSLHHFWEMVTYIANTLIFILSGVVIADAIFHNE 308
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A3B6AQ19_WHEAT (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6AQ19_WHEAT) HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10 Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
LEVSGVLAV+T G++ + +AQ ++S+H+FW ++ Y+ANT IF +SG+II D V D
Sbjct: 255 LEVSGVLAVMTLGMLYAAFAQTAFKGDNQQSLHHFWEMVAYIANTLIFILSGVIIADGVLQDN 317 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136041.2549.1 >prot_H-elongata_contig136041.2549.1 ID=prot_H-elongata_contig136041.2549.1|Name=mRNA_H-elongata_contig136041.2549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVback to top mRNA from alignment at H-elongata_contig136041:66..260+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136041.2549.1 ID=mRNA_H-elongata_contig136041.2549.1|Name=mRNA_H-elongata_contig136041.2549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig136041:66..260+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136041:66..260+ >mRNA_H-elongata_contig136041.2549.1 ID=mRNA_H-elongata_contig136041.2549.1|Name=mRNA_H-elongata_contig136041.2549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig136041:66..260+ (Himanthalia elongata Himel1 dioecious)back to top |