mRNA_H-elongata_contig136041.2549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136041.2549.1
Unique NamemRNA_H-elongata_contig136041.2549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.640e-23
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 1
Query:    1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
            L VSGVLA VT GLVMSFYA GRISPGVE SMH FWS+ TYVANT IFFVSGLIIGD+  F++
Sbjct:  194 LHVSGVLAAVTAGLVMSFYAGGRISPGVEHSMHTFWSMATYVANTVIFFVSGLIIGDQAIFND 256          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: F0Y140_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 6.600e-13
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   10 SGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
            SGVL+VV  G+ +S Y +GRIS  VE+++H+FW VL +VANTA+FF+SGLI+  +VF
Sbjct:  251 SGVLSVVFAGMYLSRYGRGRISADVEENLHSFWGVLAHVANTAVFFLSGLIMSVKVF 307          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S1UK40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.090e-13
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFF 183
            L VSGV+AVV  G +MS   + R SPGVE ++H FW +  Y ANT IFFVSGLI+ ++ F+
Sbjct:  276 LHVSGVIAVVMVGFLMSHVGKARFSPGVEHTLHGFWEIAGYGANTVIFFVSGLIMSEKSFY 336          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A5A8DG13_CAFRO (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DG13_CAFRO)

HSP 1 Score: 69.3 bits (168), Expect = 3.180e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDEYI 195
            L  SGVLAVVT G++MS + +  +SP VE +MH FW +L+Y +NT IF +SG+II  +  + E+I
Sbjct:  273 LHTSGVLAVVTLGVLMSGFGKVHVSPEVEHAMHGFWEMLSYFSNTVIFLLSGVIIAHKTLYSEHI 337          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 8.050e-12
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
            L VSG+L+VV  GL MSFY + RISP V++S+  FWS+  Y+ANT IFF++G     R F
Sbjct:  298 LRVSGILSVVIAGLYMSFYGRPRISPSVQESLREFWSLWGYMANTVIFFLTGFTAATRAF 357          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S3ICJ9_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3ICJ9_9CILI)

HSP 1 Score: 65.5 bits (158), Expect = 7.190e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
            L VSG+LA+V  GL MS + +  I    E+ +HNFW V+ Y+A T IF +SG+IIG++V  DE
Sbjct:  251 LHVSGILAIVALGLYMSAWGRTSIDVNSEEVIHNFWQVIGYIAETMIFLLSGIIIGEKVLGDE 313          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S0CWA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CWA1_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 3.420e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    4 EVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
             VSGVLAVVT GLVMS Y +  IS    +++H+FW VL Y+ NT IFFVSGL++  R+F
Sbjct:   69 HVSGVLAVVTLGLVMSKY-KSYISIASHETLHSFWEVLGYLINTLIFFVSGLLVAIRLF 126          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A7S0CTX3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTX3_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 3.440e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    4 EVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVF 180
             VSGVLAVVT GLVMS Y +  IS    +++H+FW VL Y+ NT IFFVSGL++  R+F
Sbjct:  298 HVSGVLAVVTLGLVMSKY-KSYISIASHETLHSFWEVLGYLINTLIFFVSGLLVAIRLF 355          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: UPI001C4C7C57 (sodium/hydrogen exchanger 8-like isoform X3 n=4 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4C7C57)

HSP 1 Score: 63.5 bits (153), Expect = 3.440e-10
Identity = 26/62 (41.94%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    4 EVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
             +SGVLAV+T G+  + +A+       ++S+H+FW ++TY+ANT IF +SG++I D +F +E
Sbjct:  247 NISGVLAVMTLGMFFAAFARTAFKSDSQRSLHHFWEMVTYIANTLIFILSGVVIADAIFHNE 308          
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Match: A0A3B6AQ19_WHEAT (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6AQ19_WHEAT)

HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFVSGLIIGDRVFFDE 189
            LEVSGVLAV+T G++ + +AQ       ++S+H+FW ++ Y+ANT IF +SG+II D V  D 
Sbjct:  255 LEVSGVLAVMTLGMLYAAFAQTAFKGDNQQSLHHFWEMVAYIANTLIFILSGVIIADGVLQDN 317          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136041.2549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKR2_ECTSI8.640e-2377.78Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]
F0Y140_AURAN6.600e-1357.89Na_H_Exchanger domain-containing protein (Fragment... [more]
A0A7S1UK40_9STRA9.090e-1354.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8DG13_CAFRO3.180e-1249.23Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5L0H9_9PHAE8.050e-1253.33Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A7S3ICJ9_9CILI7.190e-1149.21Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A7S0CWA1_9EUKA3.420e-1057.63Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0CTX3_9EUKA3.440e-1057.63Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
UPI001C4C7C573.440e-1041.94sodium/hydrogen exchanger 8-like isoform X3 n=4 Ta... [more]
A0A3B6AQ19_WHEAT4.690e-1047.62Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136041contigH-elongata_contig136041:66..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5.1e-19
Seed eggNOG ortholog2880.D8LKR2
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.1023238-CDS-H-elongata_contig136041:65..2601622929808.1023238-CDS-H-elongata_contig136041:65..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136041 66..260 +
1691679165.3855333-CDS-H-elongata_contig136041:65..2601691679165.3855333-CDS-H-elongata_contig136041:65..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136041 66..260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136041.2549.1prot_H-elongata_contig136041.2549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136041 66..260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136041.2549.1

>prot_H-elongata_contig136041.2549.1 ID=prot_H-elongata_contig136041.2549.1|Name=mRNA_H-elongata_contig136041.2549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
LEVSGVLAVVTTGLVMSFYAQGRISPGVEKSMHNFWSVLTYVANTAIFFV
SGLIIGDRVFFDEYI
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mRNA from alignment at H-elongata_contig136041:66..260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136041.2549.1 ID=mRNA_H-elongata_contig136041.2549.1|Name=mRNA_H-elongata_contig136041.2549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig136041:66..260+ (Himanthalia elongata Himel1 dioecious)
TTGGAGGTCTCCGGCGTGCTGGCGGTGGTTACCACTGGACTGGTGATGTC TTTCTACGCCCAGGGCCGCATATCCCCCGGGGTGGAGAAGTCGATGCACA ACTTCTGGTCCGTGCTCACCTACGTGGCTAACACCGCGATCTTCTTCGTA AGCGGGCTGATCATCGGCGACAGGGTTTTCTTCGACGAATACATC
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Coding sequence (CDS) from alignment at H-elongata_contig136041:66..260+

>mRNA_H-elongata_contig136041.2549.1 ID=mRNA_H-elongata_contig136041.2549.1|Name=mRNA_H-elongata_contig136041.2549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig136041:66..260+ (Himanthalia elongata Himel1 dioecious)
TTGGAGGTCTCCGGCGTGCTGGCGGTGGTTACCACTGGACTGGTGATGTC
TTTCTACGCCCAGGGCCGCATATCCCCCGGGGTGGAGAAGTCGATGCACA
ACTTCTGGTCCGTGCTCACCTACGTGGCTAACACCGCGATCTTCTTCGTA
AGCGGGCTGATCATCGGCGACAGGGTTTTCTTCGACGAATACATCTTGGA
GGTCTCCGGCGTGCTGGCGGTGGTTACCACTGGACTGGTGATGTCTTTCT
ACGCCCAGGGCCGCATATCCCCCGGGGTGGAGAAGTCGATGCACAACTTC
TGGTCCGTGCTCACCTACGTGGCTAACACCGCGATCTTCTTCGTAAGCGG
GCTGATCATCGGCGACAGGGTTTTCTTCGACGAATACATC
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