mRNA_H-elongata_contig136.2542.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136.2542.1
Unique NamemRNA_H-elongata_contig136.2542.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 1.610e-109
Identity = 160/252 (63.49%), Postives = 184/252 (73.02%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  WIS SW+L  NNGSII  R  ILVLDDFKCH+ E FIA L++  NT VI IPGG TPLLQPLDRMLNKQMKRLLRG YTAY+A+AVAD  +GKLKPP  G+VSTWCK+AW +I P+ VKTCFKICGLTLALDG EDHAWC HNFGE YR+LL++    W   HP V+LPPL+LP+V   G   +NP    + EV+G+LLP     ESDS+VE+ E           GGG+ EGE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVSEXXXXXXXXXXQGGGDAEGE 249          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.730e-106
Identity = 158/252 (62.70%), Postives = 184/252 (73.02%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  WIS SW+   NNGSI+  RP ILVLDDFKC +DE FIA L++  NT  I IPGGLTPLLQPLDR+LNKQMKR+LRG YTAY+A+AVAD  +GKLKPP  G+VSTWC EAW +I P+ VKTCFKICGLTLALDG EDHAW  HNFGE YR+LL++    W   HP  +LPPL+LPEV   G    NP    + EV+ +L+P     ES S+VE+LE DSD+E +   GGG  EGE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWESIIPETVKTCFKICGLTLALDGREDHAWREHNFGEDYRDLLEEQHAVWLAEHPDATLPPLKLPEVP--GGFDFNPITGAQKEVEEKLMPYVAD-ESASEVEVLEGDSDVEVVEGQGGGGAEGE 249          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 1.460e-105
Identity = 160/252 (63.49%), Postives = 183/252 (72.62%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  WIS SW+L  NNGSI+  RP ILVLDDFKCH+DE FIA L++  NT VI IPG LTPLLQPLDRMLNKQMKRLLR  YTAY+A+AVAD  +GKLKPP  G+VSTWCKEAW +  P+ VKTCF ICGLTLALDG EDHAWC HNFGE YR+LL++ R  W   H  V+LPPL+LP+V   G   +NP    + EV+G+LLP     ESDS+VE+LE           GGG  EGE
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 465          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 9.200e-105
Identity = 156/251 (62.15%), Postives = 181/251 (72.11%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEG 753
            MSFGVQE SW D REC  WIS SW+L  NNGSI+  RP ILVLDD KCH+ E FIA L++  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTAY+ +AVAD  +GKLKPP  G+VSTWCKEAW +I P+ VK+CFKICGLTLALDG EDHAWC H+FGE   +LL++    W   HP V+LPPL+LP+V   G   +NP    + EV+G+LLP     ESDS+VE+LE           GGG  EG
Sbjct:   98 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQHAVWLAEHPDVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEG 345          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 8.380e-103
Identity = 151/231 (65.37%), Postives = 174/231 (75.32%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVEL 693
            MSFGVQE SWCD REC LWI +SW+L  NNGSI+  R  ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA+TA A  DP TGKL PPG G V+TWCK AWA+I P+  KTCFKICGLTLALDG EDHAWC+HNFG+GYRELL++ RV W   HP V+LPPLQLP+V    +   N       E++  LLP    +  DSD+E+
Sbjct:  337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTA--NHIEAAAKELEAGLLP----RGDDSDIEI 561          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.100e-101
Identity = 150/231 (64.94%), Postives = 174/231 (75.32%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVEL 693
            MSFGVQE SWCD RE  LWI +SW+L  NNGS++  R  ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA+TA A  DP TGKL PPG G V+TWCK AWA+I P+ VKTCFKICGLTLALDG EDHAWC+HNFG+GYRELL++ RV W   HP V+LPPLQLP+V    +   N       E++  LLP    +  DSD+E+
Sbjct:  330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTA--NHIEAAAKELEAGLLP----RGDDSDIEI 554          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 8.230e-101
Identity = 144/218 (66.06%), Postives = 167/218 (76.61%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLP 654
            MSFGVQE SW D REC  W S SW+L  NNGSI+  RP ILVLDDFKCH+DE FIA L++  NT VI IPGGLTPLLQPLD  LNKQMKRLLRG +TAY+++AVAD  +GKLKPP  G+VSTWCKE W +I P+ VKTCFKICGLTLALDG EDHAWC HNFGE YR+LL++    W   HP V+LPPL+LP+V   G   +NP    + EV+G+LLP
Sbjct:   62 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLP 275          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 6.080e-100
Identity = 159/285 (55.79%), Postives = 182/285 (63.86%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDG---------------------------------GSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  W S SW+L  NNGSI+  RP ILVLDDFKCH+DE FIA L++  NT VI IPGGLTPLLQPLDRMLNKQ KRLLR  YTAY+A+A  D  +GKLKPP  G+VSTWCK AW +I P+ VKTCFKICGLTLALDG EDHAWC HNFGE YR+LL++    W   HP V+LPPL+LP+V                                    G   +NP M  + EV+G+LLP     ESDS+VE+LE           GGG  EGE
Sbjct:  151 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASAT-DARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDSNPIMAAQKEVEGKLLPYVPD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 433          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 5.800e-98
Identity = 148/227 (65.20%), Postives = 168/227 (74.01%), Query Frame = 1
Query:   10 GVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVE 690
            GVQE SWCD REC LWI +SW+L  NNGSI+  R  ILVLDDFKCH+D+ FIA L K  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA TA A  DP TG L PPG G V+TWCK AWA+I P+ VKTCFKICGLTLALDG EDHAWC+HNFG+GYRELL++ RV W   HP V+LP LQLP+V    +   N       E++  LLP   G +SD ++E
Sbjct:  370 GVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVPAESTA--NHIEAAAKELEAGLLPC--GDDSDIEIE 592          
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 2.100e-96
Identity = 164/299 (54.85%), Postives = 193/299 (64.55%), Query Frame = 1
Query:    1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNY------------------------------------------------TAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECL-----GVSGG 738
            M F VQE SWCDARECTLW+SESWR   N+GS+I  R SILVLDDF+CHR E+F+ DLR+R NT+VILIPGGLTPLLQPLDRMLNK+MKRL+RG                                                  T Y A+A+ADP TGKL+PPG G+VST  KE+WAAI P+ VK CFK+CGLTLALDG ED AW  HNFGEGYRE+L +    WE  HPGV+LPPLQLPEV    + G NP  T E EV  +LLPP G  +SD +VE+++ DSD+E L     G +GG
Sbjct:  286 MFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSEDDAWGTHNFGEGYREVLVQQHAEWEAQHPGVTLPPLQLPEVSS--APGANPIATAEKEVTAKLLPPEG--DSDDEVEIIDGDSDVELLDGPWVGAAGG 580          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE1.610e-10963.49DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE1.730e-10662.70DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.460e-10563.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE9.200e-10562.15DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE8.380e-10365.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.100e-10164.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE8.230e-10166.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE6.080e-10055.79DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE5.800e-9865.20DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE2.100e-9654.85Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136contigH-elongata_contig136:25786..26544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog588596.U9SZ56
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs38I47@33154,3P9QG@4751,KOG3105@1,KOG3105@2759
COG Functional cat.BD
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size759
Cds size513
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.634446-UTR-H-elongata_contig136:25785..260311622929807.634446-UTR-H-elongata_contig136:25785..26031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 25786..26031 +
1691679165.2237077-UTR-H-elongata_contig136:25785..260311691679165.2237077-UTR-H-elongata_contig136:25785..26031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 25786..26031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.6501772-CDS-H-elongata_contig136:26031..265441622929807.6501772-CDS-H-elongata_contig136:26031..26544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 26032..26544 +
1691679165.241686-CDS-H-elongata_contig136:26031..265441691679165.241686-CDS-H-elongata_contig136:26031..26544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 26032..26544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136.2542.1prot_H-elongata_contig136.2542.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136 26032..26544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136.2542.1

>prot_H-elongata_contig136.2542.1 ID=prot_H-elongata_contig136.2542.1|Name=mRNA_H-elongata_contig136.2542.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAIN
PDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHP
GVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELL
EYDSDLECLGVSGGGEKEGE*
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mRNA from alignment at H-elongata_contig136:25786..26544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136.2542.1 ID=mRNA_H-elongata_contig136.2542.1|Name=mRNA_H-elongata_contig136.2542.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig136:25786..26544+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCAC CCTTTGGATCTCGGAGAGCTGGAGGCTTCATCTCAACAACGGAAGCATCA TCACGTAGCGCCCGAGCATCCTGGTGTTAGACGACTTCAAGTGCCACCGT GACGAAGCCTTCATCGCTGACCTCCGAAAGAGGTGCAACACCAGCGTCAT CCTGATCCCGGGCGGATTGACTCCTCTCCTCCAGCCGCTGGACCGCATGC TCAACAAGCAGATGAAGCGGCTACTGCGGGGAAATTACACTGCCTACACC GCCACAGCGGTTGCCGACCCAACTACGGGCAAGCTGAAACCGCCGGGCCA TGGGATGGTGTCCACGTGGTGCAAGGAGGCGTGGGCAGCCATCAACCCCG ACGTGGTCAAGACTTGCTTCAAGATCTGCGGTCTTACGCTTGCGCTTGAC GGCGGCGAGGACCACGCCTGGTGCATGCACAACTTCGGTGAGGGTTACCG CGAGCTGCTCCAGAAGCATCGCGTTGCGTGGGAGGAAGCACACCCCGGCG TTTCGCTGCCCCCGCTCCAGCTACCAGAGGTACAAGACGGCGGGTCGATC GGCACCAACCCCAACATGACTGTAGAGAATGAGGTTCAAGGACGTCTGTT ACCTCCTACCGGTGGGAAGGAAAGCGACAGCGATGTGGAGCTGCTGGAAT ATGACAGCGATCTAGAGTGCTTGGGCGTGTCGGGGGGTGGGGAGAAGGAA GGAGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig136:25786..26544+

>mRNA_H-elongata_contig136.2542.1 ID=mRNA_H-elongata_contig136.2542.1|Name=mRNA_H-elongata_contig136.2542.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig136:25786..26544+ (Himanthalia elongata Himel1 dioecious)
ATGCTCAACAAGCAGATGAAGCGGCTACTGCGGGGAAATTACACTGCCTA
CACCGCCACAGCGGTTGCCGACCCAACTACGGGCAAGCTGAAACCGCCGG
GCCATGGGATGGTGTCCACGTGGTGCAAGGAGGCGTGGGCAGCCATCAAC
CCCGACGTGGTCAAGACTTGCTTCAAGATCTGCGGTCTTACGCTTGCGCT
TGACGGCGGCGAGGACCACGCCTGGTGCATGCACAACTTCGGTGAGGGTT
ACCGCGAGCTGCTCCAGAAGCATCGCGTTGCGTGGGAGGAAGCACACCCC
GGCGTTTCGCTGCCCCCGCTCCAGCTACCAGAGGTACAAGACGGCGGGTC
GATCGGCACCAACCCCAACATGACTGTAGAGAATGAGGTTCAAGGACGTC
TGTTACCTCCTACCGGTGGGAAGGAAAGCGACAGCGATGTGGAGCTGCTG
GAATATGACAGCGATCTAGAGTGCTTGGGCGTGTCGGGGGGTGGGGAGAA
GGAAGGAGAGTAGATGCTCAACAAGCAGATGAAGCGGCTACTGCGGGGAA
ATTACACTGCCTACACCGCCACAGCGGTTGCCGACCCAACTACGGGCAAG
CTGAAACCGCCGGGCCATGGGATGGTGTCCACGTGGTGCAAGGAGGCGTG
GGCAGCCATCAACCCCGACGTGGTCAAGACTTGCTTCAAGATCTGCGGTC
TTACGCTTGCGCTTGACGGCGGCGAGGACCACGCCTGGTGCATGCACAAC
TTCGGTGAGGGTTACCGCGAGCTGCTCCAGAAGCATCGCGTTGCGTGGGA
GGAAGCACACCCCGGCGTTTCGCTGCCCCCGCTCCAGCTACCAGAGGTAC
AAGACGGCGGGTCGATCGGCACCAACCCCAACATGACTGTAGAGAATGAG
GTTCAAGGACGTCTGTTACCTCCTACCGGTGGGAAGGAAAGCGACAGCGA
TGTGGAGCTGCTGGAATATGACAGCGATCTAGAGTGCTTGGGCGTGTCGG
GGGGTGGGGAGAAGGAAGGAGAGTAG
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