mRNA_H-elongata_contig136.2542.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE) HSP 1 Score: 325 bits (832), Expect = 1.610e-109 Identity = 160/252 (63.49%), Postives = 184/252 (73.02%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
MSFGVQE SW D REC WIS SW+L NNGSII R ILVLDDFKCH+ E FIA L++ NT VI IPGG TPLLQPLDRMLNKQMKRLLRG YTAY+A+AVAD +GKLKPP G+VSTWCK+AW +I P+ VKTCFKICGLTLALDG EDHAWC HNFGE YR+LL++ W HP V+LPPL+LP+V G +NP + EV+G+LLP ESDS+VE+ E GGG+ EGE
Sbjct: 1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVSEXXXXXXXXXXQGGGDAEGE 249
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE) HSP 1 Score: 318 bits (815), Expect = 1.730e-106 Identity = 158/252 (62.70%), Postives = 184/252 (73.02%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
MSFGVQE SW D REC WIS SW+ NNGSI+ RP ILVLDDFKC +DE FIA L++ NT I IPGGLTPLLQPLDR+LNKQMKR+LRG YTAY+A+AVAD +GKLKPP G+VSTWC EAW +I P+ VKTCFKICGLTLALDG EDHAW HNFGE YR+LL++ W HP +LPPL+LPEV G NP + EV+ +L+P ES S+VE+LE DSD+E + GGG EGE
Sbjct: 1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWESIIPETVKTCFKICGLTLALDGREDHAWREHNFGEDYRDLLEEQHAVWLAEHPDATLPPLKLPEVP--GGFDFNPITGAQKEVEEKLMPYVAD-ESASEVEVLEGDSDVEVVEGQGGGGAEGE 249
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 322 bits (826), Expect = 1.460e-105 Identity = 160/252 (63.49%), Postives = 183/252 (72.62%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
MSFGVQE SW D REC WIS SW+L NNGSI+ RP ILVLDDFKCH+DE FIA L++ NT VI IPG LTPLLQPLDRMLNKQMKRLLR YTAY+A+AVAD +GKLKPP G+VSTWCKEAW + P+ VKTCF ICGLTLALDG EDHAWC HNFGE YR+LL++ R W H V+LPPL+LP+V G +NP + EV+G+LLP ESDS+VE+LE GGG EGE
Sbjct: 217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 465
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE) HSP 1 Score: 316 bits (810), Expect = 9.200e-105 Identity = 156/251 (62.15%), Postives = 181/251 (72.11%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEG 753
MSFGVQE SW D REC WIS SW+L NNGSI+ RP ILVLDD KCH+ E FIA L++ NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTAY+ +AVAD +GKLKPP G+VSTWCKEAW +I P+ VK+CFKICGLTLALDG EDHAWC H+FGE +LL++ W HP V+LPPL+LP+V G +NP + EV+G+LLP ESDS+VE+LE GGG EG
Sbjct: 98 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQHAVWLAEHPDVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEG 345
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE) HSP 1 Score: 319 bits (817), Expect = 8.380e-103 Identity = 151/231 (65.37%), Postives = 174/231 (75.32%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVEL 693
MSFGVQE SWCD REC LWI +SW+L NNGSI+ R ILVLDDFKCH+D+ FIA L++ NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA+TA A DP TGKL PPG G V+TWCK AWA+I P+ KTCFKICGLTLALDG EDHAWC+HNFG+GYRELL++ RV W HP V+LPPLQLP+V + N E++ LLP + DSD+E+
Sbjct: 337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTA--NHIEAAAKELEAGLLP----RGDDSDIEI 561
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 316 bits (809), Expect = 1.100e-101 Identity = 150/231 (64.94%), Postives = 174/231 (75.32%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVEL 693
MSFGVQE SWCD RE LWI +SW+L NNGS++ R ILVLDDFKCH+D+ FIA L++ NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA+TA A DP TGKL PPG G V+TWCK AWA+I P+ VKTCFKICGLTLALDG EDHAWC+HNFG+GYRELL++ RV W HP V+LPPLQLP+V + N E++ LLP + DSD+E+
Sbjct: 330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTA--NHIEAAAKELEAGLLP----RGDDSDIEI 554
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE) HSP 1 Score: 306 bits (783), Expect = 8.230e-101 Identity = 144/218 (66.06%), Postives = 167/218 (76.61%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLP 654
MSFGVQE SW D REC W S SW+L NNGSI+ RP ILVLDDFKCH+DE FIA L++ NT VI IPGGLTPLLQPLD LNKQMKRLLRG +TAY+++AVAD +GKLKPP G+VSTWCKE W +I P+ VKTCFKICGLTLALDG EDHAWC HNFGE YR+LL++ W HP V+LPPL+LP+V G +NP + EV+G+LLP
Sbjct: 62 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVP--GGFDSNPITAAQKEVEGKLLP 275
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 307 bits (786), Expect = 6.080e-100 Identity = 159/285 (55.79%), Postives = 182/285 (63.86%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDG---------------------------------GSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECLGVSGGGEKEGE 756
MSFGVQE SW D REC W S SW+L NNGSI+ RP ILVLDDFKCH+DE FIA L++ NT VI IPGGLTPLLQPLDRMLNKQ KRLLR YTAY+A+A D +GKLKPP G+VSTWCK AW +I P+ VKTCFKICGLTLALDG EDHAWC HNFGE YR+LL++ W HP V+LPPL+LP+V G +NP M + EV+G+LLP ESDS+VE+LE GGG EGE
Sbjct: 151 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASAT-DARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDSNPIMAAQKEVEGKLLPYVPD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 433
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE) HSP 1 Score: 307 bits (787), Expect = 5.800e-98 Identity = 148/227 (65.20%), Postives = 168/227 (74.01%), Query Frame = 1
Query: 10 GVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVE 690
GVQE SWCD REC LWI +SW+L NNGSI+ R ILVLDDFKCH+D+ FIA L K NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA TA A DP TG L PPG G V+TWCK AWA+I P+ VKTCFKICGLTLALDG EDHAWC+HNFG+GYRELL++ RV W HP V+LP LQLP+V + N E++ LLP G +SD ++E
Sbjct: 370 GVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVPAESTA--NHIEAAAKELEAGLLPC--GDDSDIEIE 592
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 314 bits (805), Expect = 2.100e-96 Identity = 164/299 (54.85%), Postives = 193/299 (64.55%), Query Frame = 1
Query: 1 MSFGVQENSWCDARECTLWISESWRLHLNNGSIIT*RPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGNY------------------------------------------------TAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINPDVVKTCFKICGLTLALDGGEDHAWCMHNFGEGYRELLQKHRVAWEEAHPGVSLPPLQLPEVQDGGSIGTNPNMTVENEVQGRLLPPTGGKESDSDVELLEYDSDLECL-----GVSGG 738
M F VQE SWCDARECTLW+SESWR N+GS+I R SILVLDDF+CHR E+F+ DLR+R NT+VILIPGGLTPLLQPLDRMLNK+MKRL+RG T Y A+A+ADP TGKL+PPG G+VST KE+WAAI P+ VK CFK+CGLTLALDG ED AW HNFGEGYRE+L + WE HPGV+LPPLQLPEV + G NP T E EV +LLPP G +SD +VE+++ DSD+E L G +GG
Sbjct: 286 MFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSEDDAWGTHNFGEGYREVLVQQHAEWEAQHPGVTLPPLQLPEVSS--APGANPIATAEKEVTAKLLPPEG--DSDDEVEIIDGDSDVELLDGPWVGAAGG 580 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136.2542.1 >prot_H-elongata_contig136.2542.1 ID=prot_H-elongata_contig136.2542.1|Name=mRNA_H-elongata_contig136.2542.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp MLNKQMKRLLRGNYTAYTATAVADPTTGKLKPPGHGMVSTWCKEAWAAINback to top mRNA from alignment at H-elongata_contig136:25786..26544+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136.2542.1 ID=mRNA_H-elongata_contig136.2542.1|Name=mRNA_H-elongata_contig136.2542.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig136:25786..26544+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136:25786..26544+ >mRNA_H-elongata_contig136.2542.1 ID=mRNA_H-elongata_contig136.2542.1|Name=mRNA_H-elongata_contig136.2542.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig136:25786..26544+ (Himanthalia elongata Himel1 dioecious)back to top |