mRNA_H-elongata_contig135814.2528.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135814.2528.1
Unique NamemRNA_H-elongata_contig135814.2528.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5JHJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.400e-17
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 ASDLHTPASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAP-IYQLPENVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            ASDL  P S  +A  S    +W  SM  EF GLL+ GTF P +  L EN I AKWV++WK DE GW  K KSRLVAR
Sbjct:  433 ASDLRVPKSYKEAMASEHRHLWSDSMQREFNGLLEAGTFTPAMLHLVENAIHAKWVFDWKADEFGWPTKVKSRLVAR 509
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5KFW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.190e-15
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    7 DLHT-PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            D+ T P S  +A  S  A I   +M +EF+GLL+ GTFA   + P   NVIDA+WVY WK DE G +VKAK+RLVA+
Sbjct:   26 DVETEPGSYREARQSKHAVISDKAMPAEFEGLLRAGTFALAVKAPMGCNVIDARWVYKWKADETGKIVKAKARLVAK 102
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.460e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A  S  A IW  +M++E +GL++ GTF    ++PE  NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAK 284
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.480e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A  S  A IW  +M++E +GL++ GTF    ++PE  NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAK 489
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.480e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A+ S  AKIW  +M++E +GL++ GTF    ++P   NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAK 519
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.490e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A  S  A IW  +M++E +GL++ GTF    ++PE  NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAK 553
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.490e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A  S  A IW  +M++E +GL++ GTF    ++PE  NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAK 697
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A  S  A IW  +M++E +GL++ GTF    ++PE  NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  832 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAK 903
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P S  +A+ S  AKIW  +M++E +GL++ GTF    ++P   NVIDA+WV+ WK DE G +VKAK+RLVA+
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAK 786
[Close]
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.280e-14
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   19 PASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPE--NVIDAKWVYNWKVDEQGWVVKAKSRLVAR 228
            P+S ++A  S  + IW  ++++EF GLL+ GTFA   ++P   NVIDA+WVY WK +E G ++KAK+RLVA+
Sbjct:   15 PSSYNEARQSKYSSIWDKAISAEFGGLLRAGTFALAVKIPIGCNVIDARWVYKWKANETGKILKAKARLVAK 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135814.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHJ3_9PHAE1.400e-1754.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFW5_9PHAE3.190e-1551.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.460e-1450.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE2.480e-1450.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKK1_9PHAE2.480e-1450.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5J594_9PHAE2.490e-1450.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.490e-1450.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE2.500e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE2.500e-1450.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KLE6_9PHAE3.280e-1448.61Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135814contigH-elongata_contig135814:7..234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog67593.Physo132312
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QIIB@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.3046637-CDS-H-elongata_contig135814:6..2341622929806.3046637-CDS-H-elongata_contig135814:6..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135814 7..234 -
1691679164.6372547-CDS-H-elongata_contig135814:6..2341691679164.6372547-CDS-H-elongata_contig135814:6..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135814 7..234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135814.2528.1prot_H-elongata_contig135814.2528.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135814 7..234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135814.2528.1

>prot_H-elongata_contig135814.2528.1 ID=prot_H-elongata_contig135814.2528.1|Name=mRNA_H-elongata_contig135814.2528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
ASDLHTPASVHDAETSPQAKIWRHSMNSEFQGLLQVGTFAPIYQLPENVI
DAKWVYNWKVDEQGWVVKAKSRLVAR
back to top

mRNA from alignment at H-elongata_contig135814:7..234-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135814.2528.1 ID=mRNA_H-elongata_contig135814.2528.1|Name=mRNA_H-elongata_contig135814.2528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig135814:7..234- (Himanthalia elongata Himel1 dioecious)
GCATCAGACCTCCATACTCCGGCCAGTGTCCATGATGCGGAGACATCACC
GCAAGCGAAAATATGGAGACACTCCATGAACAGCGAGTTCCAAGGTCTAC
TGCAGGTCGGCACCTTTGCACCAATATATCAATTACCGGAGAACGTGATC
GACGCCAAATGGGTGTACAATTGGAAAGTTGACGAACAGGGATGGGTGGT
AAAAGCCAAATCGAGACTAGTGGCGCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig135814:7..234-

>mRNA_H-elongata_contig135814.2528.1 ID=mRNA_H-elongata_contig135814.2528.1|Name=mRNA_H-elongata_contig135814.2528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig135814:7..234- (Himanthalia elongata Himel1 dioecious)
GCATCAGACCTCCATACTCCGGCCAGTGTCCATGATGCGGAGACATCACC
GCAAGCGAAAATATGGAGACACTCCATGAACAGCGAGTTCCAAGGTCTAC
TGCAGGTCGGCACCTTTGCACCAATATATCAATTACCGGAGAACGTGATC
GACGCCAAATGGGTGTACAATTGGAAAGTTGACGAACAGGGATGGGTGGT
AAAAGCCAAATCGAGACTAGTGGCGCGCGCATCAGACCTCCATACTCCGG
CCAGTGTCCATGATGCGGAGACATCACCGCAAGCGAAAATATGGAGACAC
TCCATGAACAGCGAGTTCCAAGGTCTACTGCAGGTCGGCACCTTTGCACC
AATATATCAATTACCGGAGAACGTGATCGACGCCAAATGGGTGTACAATT
GGAAAGTTGACGAACAGGGATGGGTGGTAAAAGCCAAATCGAGACTAGTG
GCGCGC
back to top