mRNA_H-elongata_contig13553.2515.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE) HSP 1 Score: 191 bits (484), Expect = 5.550e-56 Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 1 WDCWETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
WDCWETDRRGRTALFWAAG GS EA AL+EG+GGLRPQ GDGSTPLHWA GVET++FGTGGHV+VCRWL++ G D +A T EGNTV+MWAAWAGGLD TRWA EEAG
Sbjct: 240 WDCWETDRRGRTALFWAAGGGSVEACEALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNVCRWLLNLGVDTKARTSEGNTVIMWAAWAGGLDATRWAVEEAG 350
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.240e-55 Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = 1
Query: 1 WDCWETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
WDCWETDRRGRTALFWAAG GS EA AL+EG+GGLRPQ GDGSTPLHWA GVET++FGTGGHV+VCRWL+ G D +A T EGNTV+MWAAWAGGLD TRWA EEAG
Sbjct: 344 WDCWETDRRGRTALFWAAGGGSVEACKALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNVCRWLLDLGVDTKARTSEGNTVVMWAAWAGGLDATRWAVEEAG 454
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A7S0NRB7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NRB7_9EUKA) HSP 1 Score: 97.8 bits (242), Expect = 3.170e-21 Identity = 53/114 (46.49%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQK-------FGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
+ DRRG + L +AAG G + + E GGL A DG+TPLHWA G+ +Q+ FGTGGH WLV RGADPRA T GN+VL W AWAGG W + G
Sbjct: 121 DRDRRGASVLHYAAGHGHVDCCAWACE-HGGLGVDDRASDGATPLHWAVAGMRSQRSSGMSSGFGTGGHQRAASWLVDRGADPRACTHVGNSVLHWCAWAGGQQAFEWLADHLG 233
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A0M0JUH1_9EUKA (Ankyrin repeat protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUH1_9EUKA) HSP 1 Score: 87.0 bits (214), Expect = 2.320e-17 Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 19 DRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQK--------------------------FGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATE 324
D+RG +AL +AAG G E + L GL A DG+TPLHWA G+ ++ FGTGGH+ + +WLV RGAD A T +GN++L W AWAG L+V W T+
Sbjct: 44 DKRGASALHYAAGHGHVECCALLCAA--GLEVDDRAQDGATPLHWAVAGMTSRGNPRDRAHDGAPRADDRQGRDSAGPNGFGTGGHLGMAKWLVGRGADVGAQTVDGNSILHWCAWAGTLEVLTWLTD 169
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: R1CVS8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CVS8_EMIHU) HSP 1 Score: 84.7 bits (208), Expect = 1.180e-16 Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQK-------FGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
+ DRRG TAL +AG G AL+ L +G+TPLH+A G+++++ FGTGGHV R L+ RGADP A T +GN+V+ WAAWAGG + R EE G
Sbjct: 61 DRDRRGATALHLSAGHGHDSCCEALLPL---LDVNDHTREGATPLHFAVAGMKSRRGRGGQNGFGTGGHVSTARLLLDRGADPAAVTSDGNSVVHWAAWAGGTKLLRLLCEEHG 171
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A7S2ESB1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESB1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.340e-14 Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 1
Query: 13 ETDRRGRTALFWAAGAGSAEASSALMEG-------------DGGLRPQA--------VAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPR-------ATTCEGNTVLMWAAWAGGLDVTR 312
E D RG + L WAAG G+ + AL E D A + DG+T LHWAA G ++++FG GGH+++CR+L+ D + A T +GN+VLMWAAW+G LDV +
Sbjct: 188 ERDVRGASLLHWAAGTGNLDGLVALCESMSPVINTTNHDENDQNKDTDAASIAAWTRIKRDGATTLHWAAAGAKSKEFGCGGHIEICRYLLDSIKDSKSRKDLANAQTKDGNSVLMWAAWSGTLDVVK 315
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A7S3PXD8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXD8_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.760e-14 Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVA----GDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRAT-------TCEGNTVLMWAAWAGGLDVTR 312
E D R + L W+AGAG + L+ G +AV DG++ LHWAA G E + FG GGH++VC++L+ P A T +GN++LMWAAW+G LDV +
Sbjct: 336 ERDVRDISLLHWSAGAGELGSLRQLIAALPGGMEEAVRLRADRDGASILHWAAAGSEAKAFGCGGHINVCKYLMENCGGPSAQKEVVNGLTKDGNSILMWAAWSGSLDVVK 446
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A8J2X5G3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G3_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.580e-6 Identity = 37/100 (37.00%), Postives = 45/100 (45.00%), Query Frame = 1
Query: 13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTR 312
+ DRRG +A AAG G+ + SA WAA GV GTG L+S GAD ATT +GN V+ WAAW GG+ R
Sbjct: 181 DRDRRGASAAHVAAGRGAVDVLSAXXXXXXXXXXXXXXXX-XXXXXWAACGVRGNAAGTGFEEGAAELLLSAGADACATTHDGNAVIHWAAWQGGVSAVR 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13553.2515.1 >prot_H-elongata_contig13553.2515.1 ID=prot_H-elongata_contig13553.2515.1|Name=mRNA_H-elongata_contig13553.2515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp WDCWETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHback to top mRNA from alignment at H-elongata_contig13553:6817..7837- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13553.2515.1 ID=mRNA_H-elongata_contig13553.2515.1|Name=mRNA_H-elongata_contig13553.2515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-elongata_contig13553:6817..7837- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13553:6817..7837- >mRNA_H-elongata_contig13553.2515.1 ID=mRNA_H-elongata_contig13553.2515.1|Name=mRNA_H-elongata_contig13553.2515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig13553:6817..7837- (Himanthalia elongata Himel1 dioecious)back to top |