mRNA_H-elongata_contig13553.2515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13553.2515.1
Unique NamemRNA_H-elongata_contig13553.2515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.550e-56
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 WDCWETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
            WDCWETDRRGRTALFWAAG GS EA  AL+EG+GGLRPQ   GDGSTPLHWA  GVET++FGTGGHV+VCRWL++ G D +A T EGNTV+MWAAWAGGLD TRWA EEAG
Sbjct:  240 WDCWETDRRGRTALFWAAGGGSVEACEALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNVCRWLLNLGVDTKARTSEGNTVIMWAAWAGGLDATRWAVEEAG 350          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.240e-55
Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 WDCWETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
            WDCWETDRRGRTALFWAAG GS EA  AL+EG+GGLRPQ   GDGSTPLHWA  GVET++FGTGGHV+VCRWL+  G D +A T EGNTV+MWAAWAGGLD TRWA EEAG
Sbjct:  344 WDCWETDRRGRTALFWAAGGGSVEACKALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNVCRWLLDLGVDTKARTSEGNTVVMWAAWAGGLDATRWAVEEAG 454          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A7S0NRB7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NRB7_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 3.170e-21
Identity = 53/114 (46.49%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQK-------FGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
            + DRRG + L +AAG G  +  +   E  GGL     A DG+TPLHWA  G+ +Q+       FGTGGH     WLV RGADPRA T  GN+VL W AWAGG     W  +  G
Sbjct:  121 DRDRRGASVLHYAAGHGHVDCCAWACE-HGGLGVDDRASDGATPLHWAVAGMRSQRSSGMSSGFGTGGHQRAASWLVDRGADPRACTHVGNSVLHWCAWAGGQQAFEWLADHLG 233          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A0M0JUH1_9EUKA (Ankyrin repeat protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUH1_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 2.320e-17
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   19 DRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQK--------------------------FGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATE 324
            D+RG +AL +AAG G  E  + L     GL     A DG+TPLHWA  G+ ++                           FGTGGH+ + +WLV RGAD  A T +GN++L W AWAG L+V  W T+
Sbjct:   44 DKRGASALHYAAGHGHVECCALLCAA--GLEVDDRAQDGATPLHWAVAGMTSRGNPRDRAHDGAPRADDRQGRDSAGPNGFGTGGHLGMAKWLVGRGADVGAQTVDGNSILHWCAWAGTLEVLTWLTD 169          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: R1CVS8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CVS8_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 1.180e-16
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQK-------FGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTRWATEEAG 333
            + DRRG TAL  +AG G      AL+     L       +G+TPLH+A  G+++++       FGTGGHV   R L+ RGADP A T +GN+V+ WAAWAGG  + R   EE G
Sbjct:   61 DRDRRGATALHLSAGHGHDSCCEALLPL---LDVNDHTREGATPLHFAVAGMKSRRGRGGQNGFGTGGHVSTARLLLDRGADPAAVTSDGNSVVHWAAWAGGTKLLRLLCEEHG 171          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A7S2ESB1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESB1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.340e-14
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   13 ETDRRGRTALFWAAGAGSAEASSALMEG-------------DGGLRPQA--------VAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPR-------ATTCEGNTVLMWAAWAGGLDVTR 312
            E D RG + L WAAG G+ +   AL E              D      A        +  DG+T LHWAA G ++++FG GGH+++CR+L+    D +       A T +GN+VLMWAAW+G LDV +
Sbjct:  188 ERDVRGASLLHWAAGTGNLDGLVALCESMSPVINTTNHDENDQNKDTDAASIAAWTRIKRDGATTLHWAAAGAKSKEFGCGGHIEICRYLLDSIKDSKSRKDLANAQTKDGNSVLMWAAWSGTLDVVK 315          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A7S3PXD8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXD8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.760e-14
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVA----GDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRAT-------TCEGNTVLMWAAWAGGLDVTR 312
            E D R  + L W+AGAG   +   L+    G   +AV      DG++ LHWAA G E + FG GGH++VC++L+     P A        T +GN++LMWAAW+G LDV +
Sbjct:  336 ERDVRDISLLHWSAGAGELGSLRQLIAALPGGMEEAVRLRADRDGASILHWAAAGSEAKAFGCGGHINVCKYLMENCGGPSAQKEVVNGLTKDGNSILMWAAWSGSLDVVK 446          
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Match: A0A8J2X5G3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.580e-6
Identity = 37/100 (37.00%), Postives = 45/100 (45.00%), Query Frame = 1
Query:   13 ETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLHWAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGLDVTR 312
            + DRRG +A   AAG G+ +  SA                      WAA GV     GTG        L+S GAD  ATT +GN V+ WAAW GG+   R
Sbjct:  181 DRDRRGASAAHVAAGRGAVDVLSAXXXXXXXXXXXXXXXX-XXXXXWAACGVRGNAAGTGFEEGAAELLLSAGADACATTHDGNAVIHWAAWQGGVSAVR 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13553.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KU03_9PHAE5.550e-5677.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGD8_ECTSI1.240e-5577.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0NRB7_9EUKA3.170e-2146.49Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0M0JUH1_9EUKA2.320e-1739.06Ankyrin repeat protein (Fragment) n=1 Tax=Chrysoch... [more]
R1CVS8_EMIHU1.180e-1643.86Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2ESB1_9STRA1.340e-1437.50Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3PXD8_9STRA2.760e-1440.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8J2X5G3_9STRA1.580e-637.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13553contigH-elongata_contig13553:6817..7837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D8LGD8
Preferred nameANKRD16
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
EC2.3.1.225
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13553.2515.1prot_H-elongata_contig13553.2515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13553 6817..7837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.0439143-CDS-H-elongata_contig13553:6816..69221622929805.0439143-CDS-H-elongata_contig13553:6816..6922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 6817..6922 -
1691679164.1698105-CDS-H-elongata_contig13553:6816..69221691679164.1698105-CDS-H-elongata_contig13553:6816..6922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 6817..6922 -
1622929805.0600517-CDS-H-elongata_contig13553:7177..72841622929805.0600517-CDS-H-elongata_contig13553:7177..7284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 7178..7284 -
1691679164.1812174-CDS-H-elongata_contig13553:7177..72841691679164.1812174-CDS-H-elongata_contig13553:7177..7284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 7178..7284 -
1622929805.0795755-CDS-H-elongata_contig13553:7633..78371622929805.0795755-CDS-H-elongata_contig13553:7633..7837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 7634..7837 -
1691679164.1889322-CDS-H-elongata_contig13553:7633..78371691679164.1889322-CDS-H-elongata_contig13553:7633..7837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 7634..7837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13553.2515.1

>prot_H-elongata_contig13553.2515.1 ID=prot_H-elongata_contig13553.2515.1|Name=mRNA_H-elongata_contig13553.2515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
WDCWETDRRGRTALFWAAGAGSAEASSALMEGDGGLRPQAVAGDGSTPLH
WAATGVETQKFGTGGHVDVCRWLVSRGADPRATTCEGNTVLMWAAWAGGL
DVTRWATEEAGADMDAVNANGCSVAHWAASGGDEDVCR*
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mRNA from alignment at H-elongata_contig13553:6817..7837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13553.2515.1 ID=mRNA_H-elongata_contig13553.2515.1|Name=mRNA_H-elongata_contig13553.2515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-elongata_contig13553:6817..7837- (Himanthalia elongata Himel1 dioecious)
TGGGATTGTTGGGAGACCGATAGGCGCGGTCGCACAGCCCTGTTCTGGGC CGCTGGAGCGGGCTCTGCGGAGGCGTCTTCGGCGTTGATGGAGGGAGACG GAGGTTTACGGCCGCAAGCTGTGGCGGGTGATGGCTCGACGCCGCTGCAC TGGGCTGCGACGGGCGTAGAGACCCAAAAATTCGGTACGGGGGGGCACGT GGATGTGAGGAGAGCCTCCCGCGCGTGCGTGTGTTCATTGCAGGATGCGC GGGAAGGGACGCCGCTTCGAACGTTGCCCACGTGTTAAGCGTTGTCAGTA TTATTATCATCGTAGAAAGAGGAGAGATTCGTTGCTCACGGCTCAGGGGA ACAGTCGGGCCCCCGATAGCCGACAACATCTCCCGACATATCCGCTTGTT TTCTCTAATTTCCCGTCGAGACCTGAACGGAAATCAGCGTTTGTTTGACG TGTCCCCCTACCCCCGGCGATGGTTATGTAGAAGTGACTCGTTTCGCCCA GAGATAAATTGCCTTTTCACGTTTTCAATCGATCCCTCGAACGTTTTCTC CAGGTCTGTCGCTGGCTCGTGAGTCGAGGCGCTGATCCGCGTGCGACAAC ATGCGAGGGGAACACCGTCCTCATGTGGGCGGCGTGGGCTGGGGGACTCG ACGTCACGAGGTACCGTACGCAAAGGTTTCCATCCAAGTATGTGAGGCGA TAAAACACGGATGTTTTCTTTTCCACTCTTTATTATCCGCTTGCGCGCGT AGCTTGCCCTAATGTGGGAAGATGCCAAGGTAATAATATTATCCTTCGCC AGATGGTTCCTTCGGCGTGTTATAAGGCAGCAATTAATTCCTCAGGGGGC ACTTCCAACGACCGTCTAGCAATAGCCAAGTCACGCTGAGTGCTCGACAC CCTACACCCCTGCAGGTGGGCAACGGAAGAAGCCGGCGCAGACATGGACG CAGTCAACGCGAACGGCTGTTCCGTGGCTCACTGGGCGGCATCCGGCGGG GACGAGGATGTCTGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13553:6817..7837-

>mRNA_H-elongata_contig13553.2515.1 ID=mRNA_H-elongata_contig13553.2515.1|Name=mRNA_H-elongata_contig13553.2515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig13553:6817..7837- (Himanthalia elongata Himel1 dioecious)
TGGGATTGTTGGGAGACCGATAGGCGCGGTCGCACAGCCCTGTTCTGGGC
CGCTGGAGCGGGCTCTGCGGAGGCGTCTTCGGCGTTGATGGAGGGAGACG
GAGGTTTACGGCCGCAAGCTGTGGCGGGTGATGGCTCGACGCCGCTGCAC
TGGGCTGCGACGGGCGTAGAGACCCAAAAATTCGGTACGGGGGGGCACGT
GGATTGGGATTGTTGGGAGACCGATAGGCGCGGTCGCACAGCCCTGTTCT
GGGCCGCTGGAGCGGGCTCTGCGGAGGCGTCTTCGGCGTTGATGGAGGGA
GACGGAGGTTTACGGCCGCAAGCTGTGGCGGGTGATGGCTCGACGCCGCT
GCACTGGGCTGCGACGGGCGTAGAGACCCAAAAATTCGGTACGGGGGGGC
ACGTGGATGTCTGTCGCTGGCTCGTGAGTCGAGGCGCTGATCCGCGTGCG
ACAACATGCGAGGGGAACACCGTCCTCATGTGGGCGGCGTGGGCTGGGGG
ACTCGACGTCACGAGGTCTGTCGCTGGCTCGTGAGTCGAGGCGCTGATCC
GCGTGCGACAACATGCGAGGGGAACACCGTCCTCATGTGGGCGGCGTGGG
CTGGGGGACTCGACGTCACGAGGTGGGCAACGGAAGAAGCCGGCGCAGAC
ATGGACGCAGTCAACGCGAACGGCTGTTCCGTGGCTCACTGGGCGGCATC
CGGCGGGGACGAGGATGTCTGCAGGTGAGTGGGCAACGGAAGAAGCCGGC
GCAGACATGGACGCAGTCAACGCGAACGGCTGTTCCGTGGCTCACTGGGC
GGCATCCGGCGGGGACGAGGATGTCTGCAGGTGA
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