mRNA_H-elongata_contig135345.2499.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135345.2499.1
Unique NamemRNA_H-elongata_contig135345.2499.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: D7G926_ECTSI (Transmembrane 9 superfamily member n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G926_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 1.320e-77
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            +QAVPF EI+++LALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWS FTI VGGILPYGAVFIEMFFILQSLWMGNYYYVFGFL+LVF+ILIVTCADIAMVFCYFQLCAEDY W
Sbjct:  395 TQAVPFVEIIKVLALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSCFTITVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLMLVFIILIVTCADIAMVFCYFQLCAEDYHW 521          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A835ZB63_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB63_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.230e-58
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            +QAVPF  +  +L LWF IS+P+VFLGAY GYR+P   YPV TSNIPRQIPD PWFL   FTIAVGGILP+GAVF+EMFFIL S+WMG YYYVFGFL LVFLIL+VTCADI MV CYFQLCAEDY W
Sbjct:  445 TQAVPFLTMAALLLLWFGISMPLVFLGAYLGYRRPALEYPVETSNIPRQIPDTPWFLAPIFTIAVGGILPFGAVFVEMFFILSSMWMGQYYYVFGFLFLVFLILLVTCADITMVLCYFQLCAEDYHW 571          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A836CR71_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR71_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.990e-55
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            +QAVPF  +  +L LWF +SVP+VFLGA+ GYR+    +PV TSNIPR+IP+QP+FL   FTIAVGGILP+GAVF+EMFFIL S+WMG YYYVFGFL LVFLIL+VTCAD+ MVFCYFQLCAEDY W
Sbjct:  458 TQAVPFLSMAALLLLWFGVSVPLVFLGAFLGYRRAPLEFPVETSNIPREIPEQPFFLSPIFTIAVGGILPFGAVFVEMFFILSSMWMGQYYYVFGFLFLVFLILLVTCADVTMVFCYFQLCAEDYHW 584          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S1E6H1_9STRA (Transmembrane 9 superfamily member n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6H1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.570e-54
Identity = 80/127 (62.99%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            + AVPF  ++ +L LWF IS P+VF GAYFGY++    +PV TS+IPRQIPDQPWF+   FT+A+GGILP+GA F+E++FIL S+WM  YYYVFGFLLLV+ ILI+TCA+I ++FCYFQLC E+Y W
Sbjct:   36 TDAVPFTTMIVLLVLWFGISTPLVFFGAYFGYKQDAIEFPVNTSSIPRQIPDQPWFMGIPFTLAIGGILPFGACFVELYFILASVWMDQYYYVFGFLLLVYFILIITCAEITVLFCYFQLCGENYHW 162          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7R9VNS0_9STRA (Transmembrane 9 superfamily member n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNS0_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.490e-53
Identity = 82/127 (64.57%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            S AVPF  ++ +L LWF IS P+VF GAYFGY++    +PV TSNIPRQIPDQPWF+   FT+ VGGILP+GA F+E++FIL S+WM  YYYVFGFLLLVFLIL++TCA+I ++F YFQLC E+Y W
Sbjct:  116 SDAVPFTTMIVLLVLWFGISTPLVFFGAYFGYKQDAIEFPVNTSNIPRQIPDQPWFMGIPFTLLVGGILPFGACFVELYFILSSVWMDQYYYVFGFLLLVFLILLITCAEITVLFTYFQLCGENYHW 242          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: V4JWX3_EUTSA (Transmembrane 9 superfamily member (Fragment) n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4JWX3_EUTSA)

HSP 1 Score: 174 bits (440), Expect = 1.360e-52
Identity = 77/127 (60.63%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            S A+PF  +  ++ LWF ISVP+VF+G+Y GY+KP    PV T+ IPRQ+P+QPW++   F+I +GGILP+GAVFIE+FFIL S+W+  +YY+FGFL +VFLILIVTCA+I +V CYFQLC+EDY W
Sbjct:   16 SGAIPFGTMFALVCLWFGISVPLVFIGSYLGYKKPAIEDPVKTNKIPRQVPEQPWYMKPRFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFLILIVTCAEITVVLCYFQLCSEDYNW 142          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S4BHG5_CHRCT (Transmembrane 9 superfamily member n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BHG5_CHRCT)

HSP 1 Score: 175 bits (443), Expect = 1.470e-52
Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            S AVPF  +  +L LWF IS+P+VFLGAYFGYR+     PV  + IPRQ+P+Q W++  +F++ VGG+LP+GAVFIE+FFIL S+W+  +YYVFGFLLLVF+ILI+TCA+I MV CYFQLCAEDY W
Sbjct:   54 SGAVPFGTLCALLVLWFGISMPLVFLGAYFGYRRKPLDLPVRVNQIPRQVPEQVWYMQPAFSVTVGGVLPFGAVFIELFFILSSIWLHQFYYVFGFLLLVFIILIITCAEITMVMCYFQLCAEDYHW 180          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S1ZE55_TRICV (Transmembrane 9 superfamily member n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZE55_TRICV)

HSP 1 Score: 183 bits (464), Expect = 5.510e-52
Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            S AVPFA +V +L LWF IS P+VF GAYFGY++    +PV TSNIPRQIPDQPWF+   FT+ VGGILP+G+ F+E++FIL S+WM  YYYVFGFLLLVF ILIVTCA+I ++FCYFQLC E+Y W
Sbjct:  470 SDAVPFATMVVLLVLWFGISTPLVFFGAYFGYKQDAIEFPVNTSNIPRQIPDQPWFMGIPFTLIVGGILPFGSCFVELYFILSSVWMDQYYYVFGFLLLVFFILIVTCAEITVLFCYFQLCGENYHW 596          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S4F1H2_CHRCT (Transmembrane 9 superfamily member n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1H2_CHRCT)

HSP 1 Score: 175 bits (443), Expect = 9.830e-52
Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            S AVPF  +  +L LWF IS+P+VFLGAYFGYR+     PV  + IPRQ+P+Q W++  +F++ VGG+LP+GAVFIE+FFIL S+W+  +YYVFGFLLLVF+ILI+TCA+I MV CYFQLCAEDY W
Sbjct:  123 SGAVPFGTLCALLVLWFGISMPLVFLGAYFGYRRKPLDLPVRVNQIPRQVPEQVWYMQPAFSVTVGGVLPFGAVFIELFFILSSIWLHQFYYVFGFLLLVFIILIITCAEITMVMCYFQLCAEDYHW 249          
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A1J3DKF0_NOCCA (Transmembrane 9 superfamily member (Fragment) n=2 Tax=rosids TaxID=71275 RepID=A0A1J3DKF0_NOCCA)

HSP 1 Score: 174 bits (441), Expect = 2.020e-51
Identity = 77/127 (60.63%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
            S A+PF  +  ++ LWF ISVP+VF+G+Y GY+KP    PV T+ IPRQ+P+QPW++   F+I +GGILP+GAVFIE+FFIL S+W+  +YY+FGFL +VFLILIVTCA+I +V CYFQLC+EDY W
Sbjct:  153 SGAIPFGTMFALVCLWFGISVPLVFIGSYLGYKKPAIEDPVKTNKIPRQVPEQPWYMKPGFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFLILIVTCAEITIVLCYFQLCSEDYNW 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G926_ECTSI1.320e-7792.13Transmembrane 9 superfamily member n=2 Tax=Ectocar... [more]
A0A835ZB63_9STRA1.230e-5875.59Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
A0A836CR71_9STRA1.990e-5571.65Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
A0A7S1E6H1_9STRA2.570e-5462.99Transmembrane 9 superfamily member n=2 Tax=Thalass... [more]
A0A7R9VNS0_9STRA2.490e-5364.57Transmembrane 9 superfamily member n=1 Tax=Pseudic... [more]
V4JWX3_EUTSA1.360e-5260.63Transmembrane 9 superfamily member (Fragment) n=2 ... [more]
A0A7S4BHG5_CHRCT1.470e-5262.99Transmembrane 9 superfamily member n=1 Tax=Chrysot... [more]
A0A7S1ZE55_TRICV5.510e-5266.93Transmembrane 9 superfamily member n=1 Tax=Trieres... [more]
A0A7S4F1H2_CHRCT9.830e-5262.99Transmembrane 9 superfamily member n=1 Tax=Chrysot... [more]
A0A1J3DKF0_NOCCA2.020e-5160.63Transmembrane 9 superfamily member (Fragment) n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135345contigH-elongata_contig135345:183..1232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.8
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog2880.D7G926
KEGG koko:K17086
EggNOG free text desc.positive regulation of protein exit from endoplasmic reticulum
EggNOG OGsKOG1278@1,KOG1278@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.7363067-CDS-H-elongata_contig135345:182..4191622929803.7363067-CDS-H-elongata_contig135345:182..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135345 183..419 -
1691679163.704242-CDS-H-elongata_contig135345:182..4191691679163.704242-CDS-H-elongata_contig135345:182..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135345 183..419 -
1622929803.7567813-CDS-H-elongata_contig135345:1085..12321622929803.7567813-CDS-H-elongata_contig135345:1085..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135345 1086..1232 -
1691679163.7157042-CDS-H-elongata_contig135345:1085..12321691679163.7157042-CDS-H-elongata_contig135345:1085..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135345 1086..1232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135345.2499.1prot_H-elongata_contig135345.2499.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135345 183..1232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135345.2499.1

>prot_H-elongata_contig135345.2499.1 ID=prot_H-elongata_contig135345.2499.1|Name=mRNA_H-elongata_contig135345.2499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQI
PDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLV
FLILIVTCADIAMVFCYFQLCAEDYRW*
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mRNA from alignment at H-elongata_contig135345:183..1232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135345.2499.1 ID=mRNA_H-elongata_contig135345.2499.1|Name=mRNA_H-elongata_contig135345.2499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig135345:183..1232- (Himanthalia elongata Himel1 dioecious)
TCTCAGGCGGTGCCCTTCGCCGAGATCGTGGAGATCCTGGCCCTATGGTT CTGCATCAGCGTCCCCATGGTCTTCCTCGGAGCGTACTTTGGATATCGCA AGCCGGTGGAGCCTTACCCGGTTGTGACCTCCAACATCCCCCGTCAGGTG AATACTCGCGCTGAGCCTTAACATGGACAGTGATAGCGTTCACTCACGCT GAGATCACGAGACACGTCTAGGATAACTCGGTTCGTGTCGTGGCAGCTTG TGTGCATGCGGCTTGGCTTGTGCAATTTAACCCCTATGGAACTCGATATG TTTTTTATATACTAAATTCAATATAAAAAATGAAACCCAGTTCCAGAAGA GTTAAAAGGAACCTGGGATATCTACTCTGATGGCAGCCACGTTGAAATCG TTGCGACAAGATGGGTGTCTTGGTTTCACGTGCGTGTGTTCCTTGGGGCT TAAGGAGTTGGCGTTGAGAGCCGTCGACGTTCGTGAGTTTCGACGAGTTT TCATTCCTCCTTCACTTGAGATAACGAGAGGTTTGTATCGTCTCTAGTCT TCAAAAGAGTGTCGCGATAAAACAGCGGAACAAGTCACCTGTATATTATT ATTTTCAAACATATGAACTAATTCCAACCCTTTGAACATCCACGCCTTCT TAGCACCATGAGAGGTGCAATATCCAGGGTACCAACTCTCGGCAGGTTCT TCCAGAAGAAACTTTGCCATTTCATAGTTTTACCTGTTTTTCCTACACCC CCCCCCCCCCCCCCTACCCGCGCGGCTTCCTAACACTTCGTGTCGTGACG TGACGTGACGCAGATCCCTGACCAGCCGTGGTTCTTGTGGAGTTCCTTCA CCATCGCGGTAGGCGGCATCCTCCCTTACGGCGCCGTGTTCATCGAGATG TTTTTCATCCTGCAGTCCTTGTGGATGGGTAACTATTACTATGTGTTTGG CTTTCTCCTGTTGGTCTTCCTGATCCTCATCGTCACGTGCGCTGACATCG CCATGGTGTTCTGCTACTTCCAGTTATGCGCCGAGGACTACCGCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig135345:183..1232-

>mRNA_H-elongata_contig135345.2499.1 ID=mRNA_H-elongata_contig135345.2499.1|Name=mRNA_H-elongata_contig135345.2499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig135345:183..1232- (Himanthalia elongata Himel1 dioecious)
TCTCAGGCGGTGCCCTTCGCCGAGATCGTGGAGATCCTGGCCCTATGGTT
CTGCATCAGCGTCCCCATGGTCTTCCTCGGAGCGTACTTTGGATATCGCA
AGCCGGTGGAGCCTTACCCGGTTGTGACCTCCAACATCCCCCGTCAGTCT
CAGGCGGTGCCCTTCGCCGAGATCGTGGAGATCCTGGCCCTATGGTTCTG
CATCAGCGTCCCCATGGTCTTCCTCGGAGCGTACTTTGGATATCGCAAGC
CGGTGGAGCCTTACCCGGTTGTGACCTCCAACATCCCCCGTCAGATCCCT
GACCAGCCGTGGTTCTTGTGGAGTTCCTTCACCATCGCGGTAGGCGGCAT
CCTCCCTTACGGCGCCGTGTTCATCGAGATGTTTTTCATCCTGCAGTCCT
TGTGGATGGGTAACTATTACTATGTGTTTGGCTTTCTCCTGTTGGTCTTC
CTGATCCTCATCGTCACGTGCGCTGACATCGCCATGGTGTTCTGCTACTT
CCAGTTATGCGCCGAGGACTACCGCTGGTGAATCCCTGACCAGCCGTGGT
TCTTGTGGAGTTCCTTCACCATCGCGGTAGGCGGCATCCTCCCTTACGGC
GCCGTGTTCATCGAGATGTTTTTCATCCTGCAGTCCTTGTGGATGGGTAA
CTATTACTATGTGTTTGGCTTTCTCCTGTTGGTCTTCCTGATCCTCATCG
TCACGTGCGCTGACATCGCCATGGTGTTCTGCTACTTCCAGTTATGCGCC
GAGGACTACCGCTGGTGA
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