mRNA_H-elongata_contig135345.2499.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: D7G926_ECTSI (Transmembrane 9 superfamily member n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G926_ECTSI) HSP 1 Score: 249 bits (635), Expect = 1.320e-77 Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
+QAVPF EI+++LALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWS FTI VGGILPYGAVFIEMFFILQSLWMGNYYYVFGFL+LVF+ILIVTCADIAMVFCYFQLCAEDY W
Sbjct: 395 TQAVPFVEIIKVLALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSCFTITVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLMLVFIILIVTCADIAMVFCYFQLCAEDYHW 521
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A835ZB63_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB63_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.230e-58 Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
+QAVPF + +L LWF IS+P+VFLGAY GYR+P YPV TSNIPRQIPD PWFL FTIAVGGILP+GAVF+EMFFIL S+WMG YYYVFGFL LVFLIL+VTCADI MV CYFQLCAEDY W
Sbjct: 445 TQAVPFLTMAALLLLWFGISMPLVFLGAYLGYRRPALEYPVETSNIPRQIPDTPWFLAPIFTIAVGGILPFGAVFVEMFFILSSMWMGQYYYVFGFLFLVFLILLVTCADITMVLCYFQLCAEDYHW 571
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A836CR71_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR71_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.990e-55 Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
+QAVPF + +L LWF +SVP+VFLGA+ GYR+ +PV TSNIPR+IP+QP+FL FTIAVGGILP+GAVF+EMFFIL S+WMG YYYVFGFL LVFLIL+VTCAD+ MVFCYFQLCAEDY W
Sbjct: 458 TQAVPFLSMAALLLLWFGVSVPLVFLGAFLGYRRAPLEFPVETSNIPREIPEQPFFLSPIFTIAVGGILPFGAVFVEMFFILSSMWMGQYYYVFGFLFLVFLILLVTCADVTMVFCYFQLCAEDYHW 584
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S1E6H1_9STRA (Transmembrane 9 superfamily member n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6H1_9STRA) HSP 1 Score: 179 bits (453), Expect = 2.570e-54 Identity = 80/127 (62.99%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
+ AVPF ++ +L LWF IS P+VF GAYFGY++ +PV TS+IPRQIPDQPWF+ FT+A+GGILP+GA F+E++FIL S+WM YYYVFGFLLLV+ ILI+TCA+I ++FCYFQLC E+Y W
Sbjct: 36 TDAVPFTTMIVLLVLWFGISTPLVFFGAYFGYKQDAIEFPVNTSSIPRQIPDQPWFMGIPFTLAIGGILPFGACFVELYFILASVWMDQYYYVFGFLLLVYFILIITCAEITVLFCYFQLCGENYHW 162
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7R9VNS0_9STRA (Transmembrane 9 superfamily member n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNS0_9STRA) HSP 1 Score: 179 bits (453), Expect = 2.490e-53 Identity = 82/127 (64.57%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
S AVPF ++ +L LWF IS P+VF GAYFGY++ +PV TSNIPRQIPDQPWF+ FT+ VGGILP+GA F+E++FIL S+WM YYYVFGFLLLVFLIL++TCA+I ++F YFQLC E+Y W
Sbjct: 116 SDAVPFTTMIVLLVLWFGISTPLVFFGAYFGYKQDAIEFPVNTSNIPRQIPDQPWFMGIPFTLLVGGILPFGACFVELYFILSSVWMDQYYYVFGFLLLVFLILLITCAEITVLFTYFQLCGENYHW 242
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: V4JWX3_EUTSA (Transmembrane 9 superfamily member (Fragment) n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4JWX3_EUTSA) HSP 1 Score: 174 bits (440), Expect = 1.360e-52 Identity = 77/127 (60.63%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
S A+PF + ++ LWF ISVP+VF+G+Y GY+KP PV T+ IPRQ+P+QPW++ F+I +GGILP+GAVFIE+FFIL S+W+ +YY+FGFL +VFLILIVTCA+I +V CYFQLC+EDY W
Sbjct: 16 SGAIPFGTMFALVCLWFGISVPLVFIGSYLGYKKPAIEDPVKTNKIPRQVPEQPWYMKPRFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFLILIVTCAEITVVLCYFQLCSEDYNW 142
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S4BHG5_CHRCT (Transmembrane 9 superfamily member n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BHG5_CHRCT) HSP 1 Score: 175 bits (443), Expect = 1.470e-52 Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
S AVPF + +L LWF IS+P+VFLGAYFGYR+ PV + IPRQ+P+Q W++ +F++ VGG+LP+GAVFIE+FFIL S+W+ +YYVFGFLLLVF+ILI+TCA+I MV CYFQLCAEDY W
Sbjct: 54 SGAVPFGTLCALLVLWFGISMPLVFLGAYFGYRRKPLDLPVRVNQIPRQVPEQVWYMQPAFSVTVGGVLPFGAVFIELFFILSSIWLHQFYYVFGFLLLVFIILIITCAEITMVMCYFQLCAEDYHW 180
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S1ZE55_TRICV (Transmembrane 9 superfamily member n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZE55_TRICV) HSP 1 Score: 183 bits (464), Expect = 5.510e-52 Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
S AVPFA +V +L LWF IS P+VF GAYFGY++ +PV TSNIPRQIPDQPWF+ FT+ VGGILP+G+ F+E++FIL S+WM YYYVFGFLLLVF ILIVTCA+I ++FCYFQLC E+Y W
Sbjct: 470 SDAVPFATMVVLLVLWFGISTPLVFFGAYFGYKQDAIEFPVNTSNIPRQIPDQPWFMGIPFTLIVGGILPFGSCFVELYFILSSVWMDQYYYVFGFLLLVFFILIVTCAEITVLFCYFQLCGENYHW 596
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A7S4F1H2_CHRCT (Transmembrane 9 superfamily member n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1H2_CHRCT) HSP 1 Score: 175 bits (443), Expect = 9.830e-52 Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
S AVPF + +L LWF IS+P+VFLGAYFGYR+ PV + IPRQ+P+Q W++ +F++ VGG+LP+GAVFIE+FFIL S+W+ +YYVFGFLLLVF+ILI+TCA+I MV CYFQLCAEDY W
Sbjct: 123 SGAVPFGTLCALLVLWFGISMPLVFLGAYFGYRRKPLDLPVRVNQIPRQVPEQVWYMQPAFSVTVGGVLPFGAVFIELFFILSSIWLHQFYYVFGFLLLVFIILIITCAEITMVMCYFQLCAEDYHW 249
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Match: A0A1J3DKF0_NOCCA (Transmembrane 9 superfamily member (Fragment) n=2 Tax=rosids TaxID=71275 RepID=A0A1J3DKF0_NOCCA) HSP 1 Score: 174 bits (441), Expect = 2.020e-51 Identity = 77/127 (60.63%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIPDQPWFLWSSFTIAVGGILPYGAVFIEMFFILQSLWMGNYYYVFGFLLLVFLILIVTCADIAMVFCYFQLCAEDYRW 381
S A+PF + ++ LWF ISVP+VF+G+Y GY+KP PV T+ IPRQ+P+QPW++ F+I +GGILP+GAVFIE+FFIL S+W+ +YY+FGFL +VFLILIVTCA+I +V CYFQLC+EDY W
Sbjct: 153 SGAIPFGTMFALVCLWFGISVPLVFIGSYLGYKKPAIEDPVKTNKIPRQVPEQPWYMKPGFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFLILIVTCAEITIVLCYFQLCSEDYNW 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135345.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135345.2499.1 >prot_H-elongata_contig135345.2499.1 ID=prot_H-elongata_contig135345.2499.1|Name=mRNA_H-elongata_contig135345.2499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp SQAVPFAEIVEILALWFCISVPMVFLGAYFGYRKPVEPYPVVTSNIPRQIback to top mRNA from alignment at H-elongata_contig135345:183..1232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135345.2499.1 ID=mRNA_H-elongata_contig135345.2499.1|Name=mRNA_H-elongata_contig135345.2499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig135345:183..1232- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135345:183..1232- >mRNA_H-elongata_contig135345.2499.1 ID=mRNA_H-elongata_contig135345.2499.1|Name=mRNA_H-elongata_contig135345.2499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig135345:183..1232- (Himanthalia elongata Himel1 dioecious)back to top |