mRNA_H-elongata_contig135127.2482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135127.2482.1
Unique NamemRNA_H-elongata_contig135127.2482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: D8LCD1_ECTSI (Ribosomal protein L34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.370e-24
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 MVRGNRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSD--CGISLPGVSLCSRHIYPR 201
            MVRG+ RITYTRRHAYHT SNKAK VKTPGGKLVAHY KKSAKG  C+D  C ++LPG+    +H+ P+
Sbjct:   19 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGVHCADASCSVALPGI----KHMRPK 83          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A835ZPJ0_9STRA (Ribosomal protein L34e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.940e-21
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 GNRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPRAVHK 213
            G++R+TYTRRHAY T SNK KVV+TPGGK VAHY KK A GP+C DC I+LPG++      Y     +
Sbjct:    3 GDKRVTYTRRHAYATASNKIKVVRTPGGKHVAHYRKKKANGPKCGDCKIALPGIACLRPKEYKNLKRR 70          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A7S2UXI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.910e-21
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYP 198
            R+ Y RRH+Y T SNK K+VKTPGG+LVAHYH K AKGP+C++CGISLPG+    +H+ P
Sbjct:    6 RVQYRRRHSYATKSNKIKIVKTPGGRLVAHYHTKKAKGPKCAECGISLPGI----KHVRP 61          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A6U1TEH8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1TEH8_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 4.160e-20
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPR 201
            R+TY RRH Y+T SNK K+VKTPGGKL   Y  KSAKGP C DCGISLPG++    H+ P+
Sbjct:    4 RVTYRRRHCYNTKSNKTKIVKTPGGKLTVQYRTKSAKGPSCGDCGISLPGIA----HLRPK 60          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A6V2RVW8_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2RVW8_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 4.770e-20
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPR 201
            R+ YTRRH Y T SNK K+ KTPGG+LVAHYHKK A GP+CSDCG  L G+    +H+ P+
Sbjct:    6 RVQYTRRHCYATKSNKVKITKTPGGRLVAHYHKKKAAGPKCSDCGTVLAGI----KHLRPK 62          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A077WWL3_9FUNG (Putative 60S ribosomal protein L34-B n=3 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WWL3_9FUNG)

HSP 1 Score: 77.8 bits (190), Expect = 6.240e-17
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGV-SLCSRHIYPRAVHK 213
            R+TY RR +Y+T SN+ KVVKTPGGKLV  Y KK  K PRC DCG++LPG+ +L SR +   A ++
Sbjct:    4 RLTYRRRLSYNTRSNRVKVVKTPGGKLVYQYQKKPVKAPRCGDCGVALPGLKALRSRKLSNLAKNQ 69          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A642UX31_DIURU (Uncharacterized protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UX31_DIURU)

HSP 1 Score: 77.0 bits (188), Expect = 1.620e-16
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIY 195
            R+TY RR+ Y+T SNK KVVKTPGGKL+A + KK A  P+C DCGI+LPGV+      Y
Sbjct:    4 RVTYRRRNPYNTKSNKIKVVKTPGGKLIAQHVKKIASRPKCGDCGIALPGVAALRPREY 62          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A8H7SEY4_9FUNG (Uncharacterized protein n=2 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SEY4_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 2.520e-16
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGV 171
            R+TY RR +Y+T SN+ KVVKTPGGKLV  Y KK  K PRC DCG++LPG+
Sbjct:    4 RLTYRRRLSYNTRSNRVKVVKTPGGKLVYQYQKKPVKAPRCGDCGVALPGL 54          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A485KJ51_9STRA (Aste57867_7967 protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KJ51_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-16
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   13 NRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIY 195
            N RITY RRH+Y T SN+   VKTPGGKLVAHY KK++ GP+C DC  SL G+   +   Y
Sbjct:    4 NVRITYRRRHSYATKSNRIVPVKTPGGKLVAHYRKKTSHGPKCGDCKQSLKGIKHLATKAY 64          
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A7S1XUC3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.760e-16
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPRA 204
            R+T  RRHAY TLSNK K VKTPGG L AHYH+K     +C DCG +LPG+         RA
Sbjct:    6 RVTNPRRHAYRTLSNKVKAVKTPGGSLKAHYHRKKPASVKCGDCGTALPGLKALRPIAMKRA 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCD1_ECTSI6.370e-2468.12Ribosomal protein L34 n=1 Tax=Ectocarpus siliculos... [more]
A0A835ZPJ0_9STRA1.940e-2157.35Ribosomal protein L34e-domain-containing protein n... [more]
A0A7S2UXI2_9STRA2.910e-2163.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U1TEH8_9EUKA4.160e-2062.30Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6V2RVW8_HETAK4.770e-2060.66Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A077WWL3_9FUNG6.240e-1756.06Putative 60S ribosomal protein L34-B n=3 Tax=Licht... [more]
A0A642UX31_DIURU1.620e-1659.32Uncharacterized protein n=1 Tax=Diutina rugosa Tax... [more]
A0A8H7SEY4_9FUNG2.520e-1664.71Uncharacterized protein n=2 Tax=Mucor circinatus T... [more]
A0A485KJ51_9STRA4.390e-1657.38Aste57867_7967 protein n=8 Tax=Saprolegniaceae Tax... [more]
A0A7S1XUC3_9STRA5.760e-1654.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135127contigH-elongata_contig135127:1329..1547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.3e-18
Seed eggNOG ortholog2880.D8LCD1
Preferred nameRPL34
KEGG koko:K02915
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2174@1,KOG1790@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description60S ribosomal protein L34
Ec32 orthologEc-14_005200.1
Exons1
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.2888808-CDS-H-elongata_contig135127:1328..15471622929802.2888808-CDS-H-elongata_contig135127:1328..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135127 1329..1547 +
1691679163.0368607-CDS-H-elongata_contig135127:1328..15471691679163.0368607-CDS-H-elongata_contig135127:1328..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135127 1329..1547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135127.2482.1prot_H-elongata_contig135127.2482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135127 1329..1547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135127.2482.1

>prot_H-elongata_contig135127.2482.1 ID=prot_H-elongata_contig135127.2482.1|Name=mRNA_H-elongata_contig135127.2482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MVRGNRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDC
GISLPGVSLCSRHIYPRAVHKG*
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mRNA from alignment at H-elongata_contig135127:1329..1547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135127.2482.1 ID=mRNA_H-elongata_contig135127.2482.1|Name=mRNA_H-elongata_contig135127.2482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig135127:1329..1547+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCGTGGCAACAGGCGTATCACTTATACACGGCGCCATGCCTACCA CACCCTTTCCAACAAGGCCAAGGTGGTGAAGACGCCTGGCGGGAAGCTTG TGGCACACTACCACAAAAAATCTGCCAAGGGCCCTCGCTGTAGCGACTGC GGCATTTCGCTCCCCGGGGTGAGCCTTTGCTCTCGACATATATATCCGCG CGCAGTTCACAAGGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig135127:1329..1547+

>mRNA_H-elongata_contig135127.2482.1 ID=mRNA_H-elongata_contig135127.2482.1|Name=mRNA_H-elongata_contig135127.2482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig135127:1329..1547+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCGTGGCAACAGGCGTATCACTTATACACGGCGCCATGCCTACCA
CACCCTTTCCAACAAGGCCAAGGTGGTGAAGACGCCTGGCGGGAAGCTTG
TGGCACACTACCACAAAAAATCTGCCAAGGGCCCTCGCTGTAGCGACTGC
GGCATTTCGCTCCCCGGGGTGAGCCTTTGCTCTCGACATATATATCCGCG
CGCAGTTCACAAGGGATAAATGGTGCGTGGCAACAGGCGTATCACTTATA
CACGGCGCCATGCCTACCACACCCTTTCCAACAAGGCCAAGGTGGTGAAG
ACGCCTGGCGGGAAGCTTGTGGCACACTACCACAAAAAATCTGCCAAGGG
CCCTCGCTGTAGCGACTGCGGCATTTCGCTCCCCGGGGTGAGCCTTTGCT
CTCGACATATATATCCGCGCGCAGTTCACAAGGGATAA
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