mRNA_H-elongata_contig135127.2482.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: D8LCD1_ECTSI (Ribosomal protein L34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD1_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 6.370e-24 Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 MVRGNRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSD--CGISLPGVSLCSRHIYPR 201
MVRG+ RITYTRRHAYHT SNKAK VKTPGGKLVAHY KKSAKG C+D C ++LPG+ +H+ P+
Sbjct: 19 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGVHCADASCSVALPGI----KHMRPK 83
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A835ZPJ0_9STRA (Ribosomal protein L34e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.940e-21 Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 10 GNRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPRAVHK 213
G++R+TYTRRHAY T SNK KVV+TPGGK VAHY KK A GP+C DC I+LPG++ Y +
Sbjct: 3 GDKRVTYTRRHAYATASNKIKVVRTPGGKHVAHYRKKKANGPKCGDCKIALPGIACLRPKEYKNLKRR 70
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A7S2UXI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI2_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.910e-21 Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYP 198
R+ Y RRH+Y T SNK K+VKTPGG+LVAHYH K AKGP+C++CGISLPG+ +H+ P
Sbjct: 6 RVQYRRRHSYATKSNKIKIVKTPGGRLVAHYHTKKAKGPKCAECGISLPGI----KHVRP 61
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A6U1TEH8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1TEH8_9EUKA) HSP 1 Score: 86.3 bits (212), Expect = 4.160e-20 Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPR 201
R+TY RRH Y+T SNK K+VKTPGGKL Y KSAKGP C DCGISLPG++ H+ P+
Sbjct: 4 RVTYRRRHCYNTKSNKTKIVKTPGGKLTVQYRTKSAKGPSCGDCGISLPGIA----HLRPK 60
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A6V2RVW8_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2RVW8_HETAK) HSP 1 Score: 85.9 bits (211), Expect = 4.770e-20 Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPR 201
R+ YTRRH Y T SNK K+ KTPGG+LVAHYHKK A GP+CSDCG L G+ +H+ P+
Sbjct: 6 RVQYTRRHCYATKSNKVKITKTPGGRLVAHYHKKKAAGPKCSDCGTVLAGI----KHLRPK 62
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A077WWL3_9FUNG (Putative 60S ribosomal protein L34-B n=3 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WWL3_9FUNG) HSP 1 Score: 77.8 bits (190), Expect = 6.240e-17 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGV-SLCSRHIYPRAVHK 213
R+TY RR +Y+T SN+ KVVKTPGGKLV Y KK K PRC DCG++LPG+ +L SR + A ++
Sbjct: 4 RLTYRRRLSYNTRSNRVKVVKTPGGKLVYQYQKKPVKAPRCGDCGVALPGLKALRSRKLSNLAKNQ 69
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A642UX31_DIURU (Uncharacterized protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UX31_DIURU) HSP 1 Score: 77.0 bits (188), Expect = 1.620e-16 Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIY 195
R+TY RR+ Y+T SNK KVVKTPGGKL+A + KK A P+C DCGI+LPGV+ Y
Sbjct: 4 RVTYRRRNPYNTKSNKIKVVKTPGGKLIAQHVKKIASRPKCGDCGIALPGVAALRPREY 62
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A8H7SEY4_9FUNG (Uncharacterized protein n=2 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SEY4_9FUNG) HSP 1 Score: 76.3 bits (186), Expect = 2.520e-16 Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGV 171
R+TY RR +Y+T SN+ KVVKTPGGKLV Y KK K PRC DCG++LPG+
Sbjct: 4 RLTYRRRLSYNTRSNRVKVVKTPGGKLVYQYQKKPVKAPRCGDCGVALPGL 54
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A485KJ51_9STRA (Aste57867_7967 protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KJ51_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 4.390e-16 Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 13 NRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIY 195
N RITY RRH+Y T SN+ VKTPGGKLVAHY KK++ GP+C DC SL G+ + Y
Sbjct: 4 NVRITYRRRHSYATKSNRIVPVKTPGGKLVAHYRKKTSHGPKCGDCKQSLKGIKHLATKAY 64
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Match: A0A7S1XUC3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC3_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 5.760e-16 Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 19 RITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCGISLPGVSLCSRHIYPRA 204
R+T RRHAY TLSNK K VKTPGG L AHYH+K +C DCG +LPG+ RA
Sbjct: 6 RVTNPRRHAYRTLSNKVKAVKTPGGSLKAHYHRKKPASVKCGDCGTALPGLKALRPIAMKRA 67 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135127.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135127.2482.1 >prot_H-elongata_contig135127.2482.1 ID=prot_H-elongata_contig135127.2482.1|Name=mRNA_H-elongata_contig135127.2482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp MVRGNRRITYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCSDCback to top mRNA from alignment at H-elongata_contig135127:1329..1547+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135127.2482.1 ID=mRNA_H-elongata_contig135127.2482.1|Name=mRNA_H-elongata_contig135127.2482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig135127:1329..1547+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135127:1329..1547+ >mRNA_H-elongata_contig135127.2482.1 ID=mRNA_H-elongata_contig135127.2482.1|Name=mRNA_H-elongata_contig135127.2482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig135127:1329..1547+ (Himanthalia elongata Himel1 dioecious)back to top |